←Back to structures
rifoxyb1_full_scaffold_4_prodigal-single.1__X__X__00182
Bact-Virrifoxyb1_full_scaffold_4_prodigal-single.1__X__X__00182
Identity
- Kingdom:
- phage
Quality
73.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 13-78
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2kc5A01 | 3.30.1460.40 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › [NiFe]-hydrogenase assembly chaperone, HybE | 0.63 | 38.0 | 3.00e-01 | 72.7% | 28.7% |
| 2oa9B02 | 3.30.70.3570 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › MvaI/BcnI restriction endonuclease, recognition domain | 0.54 | 36.0 | 3.03e-01 | 83.3% | 36.2% |
| 3h6zA03 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.53 | 40.0 | 3.36e-01 | 81.8% | 47.3% |
| 1t6eX01 | 2.40.70.10 | Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases | 0.53 | 41.0 | 3.23e-01 | 93.9% | 88.5% |
| 1mhnA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.53 | 36.0 | 3.78e-01 | 83.3% | 81.4% |
| 6tdyD01 | 2.40.10.170 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.52 | 34.0 | 3.27e-01 | 75.8% | 58.7% |
| 3clqA02 | 3.90.1710.10 | Alpha Beta › Alpha-Beta Complex › Enterococcus faecalis V583 fold › Enterococcus faecalis V583 domain | 0.52 | 40.0 | 3.13e-01 | 87.9% | 98.7% |
| 2digA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 35.0 | 3.54e-01 | 83.3% | 69.1% |
| 1mkeA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.50 | 36.0 | 2.87e-01 | 77.3% | 38.9% |
| 3mp6A05 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.50 | 34.0 | 3.48e-01 | 83.3% | 74.6% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3254408 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.68 | 47.0 | 4.73e-01 | 77.3% | 72.3% |
| 4948484 | 102.1.1.13 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › DUF655 | 0.58 | 41.0 | 3.16e-01 | 77.3% | 41.5% |
| 3417430 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.54 | 38.0 | 3.26e-01 | 74.2% | 62.9% |
| 3798312 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.53 | 39.0 | 3.87e-01 | 83.3% | 75.7% |
| 3167061 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.52 | 40.0 | 3.62e-01 | 93.9% | 58.9% |
| 4086268 | 2.4.1.2 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 | 0.52 | 36.0 | 3.28e-01 | 81.8% | 53.3% |
| 3622389 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.52 | 35.0 | 3.59e-01 | 83.3% | 70.8% |
| 3274551 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.52 | 35.0 | 3.40e-01 | 83.3% | 62.7% |
| 3501699 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.51 | 35.0 | 3.32e-01 | 83.3% | 58.7% |
| 3405627 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.51 | 35.0 | 3.12e-01 | 81.8% | 49.5% |
D2
high
residues 84-164
Domain cluster:
rep: CG10_big_fil_rev_8_21_14_0-10_scaffold_17_prodigal-single.1__X__X__00096__D70-143
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1u3eM01 | 3.90.75.20 | Alpha Beta › Alpha-Beta Complex › Homing Intron 3 (I-Ppo) Encoded Endonuclease; Chain A › | 0.77 | 61.0 | 5.54e-01 | 100.0% | 64.2% |
| 1a73A00 | 3.90.75.10 | Alpha Beta › Alpha-Beta Complex › Homing Intron 3 (I-Ppo) Encoded Endonuclease; Chain A › Homing Intron 3 (I-ppo) Encoded Endonuclease; Chain A | 0.67 | 54.0 | 4.34e-01 | 100.0% | 43.8% |
| 1z1bA01 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.63 | 29.0 | 3.33e-01 | 84.0% | 57.9% |
| 2o8bB04 | 1.10.1420.10 | Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › | 0.52 | 35.0 | 3.05e-01 | 80.2% | 43.5% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3266965 | 378.1.2.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › Inactive Tox-GHH domain of teneurin › HNH_3 | 0.89 | 65.0 | 7.23e-01 | 91.4% | 95.4% |
| 5053631 | 378.1.1.19 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_3 | 0.83 | 72.0 | 6.42e-01 | 92.6% | 83.6% |
| 3586841 | 378.1.1.7 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › NUMOD4,HNH_3 | 0.76 | 61.0 | 5.39e-01 | 100.0% | 60.0% |
| 3539740 | 378.1.1.19 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_3 | 0.68 | 63.0 | 5.38e-01 | 100.0% | 79.2% |
| 89916 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.68 | 55.0 | 4.36e-01 | 100.0% | 43.8% |
| 8233 | 378.1.1.6 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › zf-His_Me_endon | 0.67 | 54.0 | 4.34e-01 | 100.0% | 43.8% |
| 4303143 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.65 | 38.0 | 3.80e-01 | 84.0% | 54.1% |
| 4194370 | 4281.1.1.1 ↗ | a+b two layers › Ribosomal protein L35p › Ribosomal protein L35p › Ribosomal protein L35p › Ribosomal_L35p | 0.53 | 33.0 | 3.73e-01 | 87.7% | 83.3% |
| 4989190 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.53 | 26.0 | 3.14e-01 | 86.4% | 72.0% |
| 2323913 | 378.1.1.24 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › DNase_NucA_NucB | 0.53 | 32.0 | 2.97e-01 | 86.4% | 45.0% |
| 4072043 | 4281.1.1.1 ↗ | a+b two layers › Ribosomal protein L35p › Ribosomal protein L35p › Ribosomal protein L35p › Ribosomal_L35p | 0.53 | 33.0 | 3.60e-01 | 85.2% | 76.5% |
| 4439291 | 4281.1.1.1 ↗ | a+b two layers › Ribosomal protein L35p › Ribosomal protein L35p › Ribosomal protein L35p › Ribosomal_L35p | 0.52 | 32.0 | 3.63e-01 | 85.2% | 83.3% |
| 4206222 | 4281.1.1.1 ↗ | a+b two layers › Ribosomal protein L35p › Ribosomal protein L35p › Ribosomal protein L35p › Ribosomal_L35p | 0.52 | 32.0 | 3.52e-01 | 86.4% | 75.0% |
| 4147270 | 242.2.1.0 ↗ | a+b two layers › Homing endonucleases-like › tRNA-intron endonuclease N-terminal domain-like › tRNA-intron endonuclease N-terminal domain-like | 0.52 | 35.0 | 3.92e-01 | 87.7% | 95.0% |
| 4057006 | 4281.1.1.1 ↗ | a+b two layers › Ribosomal protein L35p › Ribosomal protein L35p › Ribosomal protein L35p › Ribosomal_L35p | 0.52 | 32.0 | 3.67e-01 | 86.4% | 86.4% |
| 3253779 | 242.2.1.6 ↗ | a+b two layers › Homing endonucleases-like › tRNA-intron endonuclease N-terminal domain-like › tRNA-intron endonuclease N-terminal domain-like › tRNA_int_end_N2 | 0.51 | 38.0 | 4.01e-01 | 88.9% | 91.4% |
| 3381927 | 4281.1.1.1 ↗ | a+b two layers › Ribosomal protein L35p › Ribosomal protein L35p › Ribosomal protein L35p › Ribosomal_L35p | 0.50 | 31.0 | 3.46e-01 | 86.4% | 79.7% |