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rifoxyb1_full_scaffold_4_prodigal-single.1__X__X__00185

Bact-Vir

rifoxyb1_full_scaffold_4_prodigal-single.1__X__X__00185

Identity

Kingdom:
phage

Quality

92.0 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 12-117
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05866.17 best RusA 62.0 1.20e-16 99.1% 93.5%
CATH (34)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1q8rA00 3.30.1330.70 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Holliday junction resolvase RusA 0.85 78.0 7.54e-01 100.0% 88.1%
2xkbL00 3.40.50.1440 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Tubulin/FtsZ, GTPase domain 0.71 54.0 3.67e-01 84.0% 22.7%
1ofuA02 3.30.1330.20 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Tubulin/FtsZ, C-terminal domain 0.65 48.0 5.05e-01 84.0% 87.1%
1oi2A02 3.30.1180.20 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › Dihydroxyacetone kinase; domain 2 0.64 50.0 4.40e-01 84.9% 66.0%
5l16A01 3.30.1330.10 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › PurM-like, N-terminal domain 0.64 48.0 4.63e-01 84.9% 69.1%
3kizA01 3.30.1330.10 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › PurM-like, N-terminal domain 0.63 51.0 4.63e-01 85.8% 66.7%
2otmA00 3.30.1330.40 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › RutC-like 0.63 52.0 4.69e-01 100.0% 64.2%
5aq1A02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.62 48.0 3.57e-01 83.0% 61.3%
3d01E00 3.30.1330.40 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › RutC-like 0.62 52.0 4.61e-01 100.0% 63.9%
4nq3A01 3.30.1330.170 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Cyanuric acid hydrolase/Barbiturase, RU A 0.61 46.0 4.74e-01 97.2% 85.7%
6jw7A01 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.61 46.0 3.84e-01 79.2% 65.4%
4ei7B01 3.30.1330.190 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › 0.61 52.0 4.74e-01 100.0% 68.7%
4b45A02 3.30.1330.20 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Tubulin/FtsZ, C-terminal domain 0.61 45.0 4.36e-01 98.1% 70.3%
1vk3A02 3.30.1330.10 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › PurM-like, N-terminal domain 0.61 43.0 4.00e-01 81.1% 57.8%
2cvoA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.61 46.0 3.98e-01 81.1% 60.5%
1vknA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.60 45.0 3.95e-01 80.2% 61.2%
1dihA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.60 46.0 4.58e-01 81.1% 88.9%
1vk3A03 3.30.1330.10 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › PurM-like, N-terminal domain 0.60 45.0 4.09e-01 81.1% 58.5%
1nyrA03 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.59 45.0 3.25e-01 84.0% 27.2%
2ozpA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.59 44.0 3.84e-01 80.2% 58.1%
2zf8A02 3.30.1330.60 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › OmpA-like domain 0.59 41.0 4.30e-01 84.0% 82.6%
2hsnA01 3.40.30.170 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › 0.59 26.0 3.57e-01 97.2% 83.0%
3rycB02 3.30.1330.20 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Tubulin/FtsZ, C-terminal domain 0.58 45.0 4.47e-01 84.0% 77.2%
3cb2A02 3.30.1330.20 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Tubulin/FtsZ, C-terminal domain 0.58 45.0 4.64e-01 84.0% 87.9%
1tvkA02 3.30.1330.20 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Tubulin/FtsZ, C-terminal domain 0.58 45.0 4.45e-01 84.0% 83.5%
3a32A01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.58 45.0 3.22e-01 84.0% 29.9%
3uh0A01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.57 44.0 3.21e-01 84.9% 29.4%
1nvmB02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.55 40.0 3.63e-01 80.2% 53.9%
6aeoB01 3.30.1330.60 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › OmpA-like domain 0.54 47.0 4.39e-01 99.1% 78.5%
1z6nA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.53 47.0 4.09e-01 99.1% 88.6%
1cliB01 3.30.1330.10 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › PurM-like, N-terminal domain 0.53 47.0 4.24e-01 100.0% 94.0%
3mcqA01 3.30.1330.10 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › PurM-like, N-terminal domain 0.52 46.0 4.31e-01 100.0% 84.3%
3fovA00 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.51 32.0 3.31e-01 71.7% 64.7%
2rb9A01 3.30.1330.10 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › PurM-like, N-terminal domain 0.51 46.0 4.17e-01 100.0% 93.8%
ECOD (51)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3982309 301.4.1.1 a+b three layers › Bacillus chorismate mutase-like › Holliday junction resolvase RusA › Holliday junction resolvase RusA › RusA 0.89 83.0 7.90e-01 100.0% 86.7%
5061637 301.4.1.1 a+b three layers › Bacillus chorismate mutase-like › Holliday junction resolvase RusA › Holliday junction resolvase RusA › RusA 0.86 82.0 7.22e-01 100.0% 88.3%
318712 301.4.1.1 a+b three layers › Bacillus chorismate mutase-like › Holliday junction resolvase RusA › Holliday junction resolvase RusA › RusA 0.86 79.0 7.58e-01 100.0% 86.7%
3963267 301.4.1.1 a+b three layers › Bacillus chorismate mutase-like › Holliday junction resolvase RusA › Holliday junction resolvase RusA › RusA 0.84 80.0 7.48e-01 100.0% 88.0%
4156345 301.4.1.1 a+b three layers › Bacillus chorismate mutase-like › Holliday junction resolvase RusA › Holliday junction resolvase RusA › RusA 0.83 78.0 7.46e-01 100.0% 88.3%
5083025 301.4.1.1 a+b three layers › Bacillus chorismate mutase-like › Holliday junction resolvase RusA › Holliday junction resolvase RusA › RusA 0.78 74.0 6.94e-01 100.0% 88.8%
4537541 301.4.1.0 a+b three layers › Bacillus chorismate mutase-like › Holliday junction resolvase RusA › Holliday junction resolvase RusA 0.75 69.0 6.62e-01 100.0% 91.7%
3728115 301.13.1.2 a+b three layers › Bacillus chorismate mutase-like › DAK1/DegV C-terminal domain › DAK1/DegV C-terminal domain › Dak1 0.71 55.0 4.61e-01 82.1% 50.0%
405240 301.6.1.7 a+b three layers › Bacillus chorismate mutase-like › Tubulin C-terminal domain-like › Tubulin C-terminal domain-like › TubZ-like_C 0.70 54.0 4.69e-01 84.0% 53.4%
4558877 301.6.1.0 a+b three layers › Bacillus chorismate mutase-like › Tubulin C-terminal domain-like › Tubulin C-terminal domain-like 0.69 51.0 4.77e-01 81.1% 63.1%
3937552 301.13.1.2 a+b three layers › Bacillus chorismate mutase-like › DAK1/DegV C-terminal domain › DAK1/DegV C-terminal domain › Dak1 0.68 50.0 4.61e-01 82.1% 60.7%
4948826 301.6.1.2 a+b three layers › Bacillus chorismate mutase-like › Tubulin C-terminal domain-like › Tubulin C-terminal domain-like › FtsZ_C 0.66 48.0 5.13e-01 81.1% 88.8%
4381590 301.13.1.2 a+b three layers › Bacillus chorismate mutase-like › DAK1/DegV C-terminal domain › DAK1/DegV C-terminal domain › Dak1 0.65 50.0 4.39e-01 82.1% 55.5%
4443932 3008.1.1.2 a+b three layers › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DUF5915 0.65 47.0 5.08e-01 97.2% 94.1%
3339457 301.13.1.2 a+b three layers › Bacillus chorismate mutase-like › DAK1/DegV C-terminal domain › DAK1/DegV C-terminal domain › Dak1 0.64 50.0 5.11e-01 84.9% 88.0%
3811404 301.13.1.2 a+b three layers › Bacillus chorismate mutase-like › DAK1/DegV C-terminal domain › DAK1/DegV C-terminal domain › Dak1 0.64 49.0 4.31e-01 84.9% 53.3%
3688584 301.7.1.1 a+b three layers › Bacillus chorismate mutase-like › YjgF-like › YjgF-like › Ribonuc_L-PSP 0.63 48.0 4.43e-01 81.1% 61.4%
4332452 301.2.1.1 a+b three layers › Bacillus chorismate mutase-like › PurM N-terminal domain-like › PurM N-terminal domain-like › AIRS 0.63 46.0 4.60e-01 84.9% 73.6%
4971955 301.7.1.4 a+b three layers › Bacillus chorismate mutase-like › YjgF-like › YjgF-like › YjgF_endoribonc 0.63 53.0 4.75e-01 100.0% 65.5%
4987617 301.6.1.3 a+b three layers › Bacillus chorismate mutase-like › Tubulin C-terminal domain-like › Tubulin C-terminal domain-like › CetZ_C 0.63 46.0 4.03e-01 84.9% 49.7%
4999242 301.2.1.1 a+b three layers › Bacillus chorismate mutase-like › PurM N-terminal domain-like › PurM N-terminal domain-like › AIRS 0.63 50.0 4.18e-01 85.8% 49.2%
5052553 301.2.1.1 a+b three layers › Bacillus chorismate mutase-like › PurM N-terminal domain-like › PurM N-terminal domain-like › AIRS 0.62 46.0 4.17e-01 81.1% 57.9%
3979733 301.3.1.0 a+b three layers › Bacillus chorismate mutase-like › OmpA-like › OmpA-like 0.62 47.0 4.72e-01 84.0% 81.0%
4172925 298.1.1.9 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › DapB_C 0.62 44.0 4.68e-01 80.2% 86.7%
4947539 301.2.1.1 a+b three layers › Bacillus chorismate mutase-like › PurM N-terminal domain-like › PurM N-terminal domain-like › AIRS 0.62 48.0 4.12e-01 84.0% 51.8%
4097489 301.7.1.8 a+b three layers › Bacillus chorismate mutase-like › YjgF-like › YjgF-like › PF29624 0.61 45.0 4.31e-01 77.4% 68.0%
5004699 298.3.1.2 a+b two layers › FwdE/GAPDH domain-like › Serine dehydratase beta chain-like › Serine dehydratase beta chain-like › PGDH_inter 0.60 54.0 4.99e-01 99.1% 78.5%
4165783 298.3.1.2 a+b two layers › FwdE/GAPDH domain-like › Serine dehydratase beta chain-like › Serine dehydratase beta chain-like › PGDH_inter 0.60 53.0 4.93e-01 99.1% 78.5%
5010286 301.2.1.1 a+b three layers › Bacillus chorismate mutase-like › PurM N-terminal domain-like › PurM N-terminal domain-like › AIRS 0.60 45.0 3.92e-01 80.2% 52.7%
None 0.59 45.0 3.73e-01 80.2% 45.8%
5006891 2003.1.6.12 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Tubulin nucleotide-binding domain-like › CetZ_C 0.59 45.0 3.10e-01 85.8% 22.1%
4527021 301.3.1.1 a+b three layers › Bacillus chorismate mutase-like › OmpA-like › OmpA-like › OmpA 0.59 48.0 4.76e-01 99.1% 83.5%
5031370 301.2.1.1 a+b three layers › Bacillus chorismate mutase-like › PurM N-terminal domain-like › PurM N-terminal domain-like › AIRS 0.58 47.0 4.20e-01 96.2% 60.0%
3928594 3008.1.1.0 a+b three layers › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 0.58 46.0 4.70e-01 85.8% 97.0%
None 0.58 44.0 3.62e-01 81.1% 44.1%
4999237 301.2.1.0 a+b three layers › Bacillus chorismate mutase-like › PurM N-terminal domain-like › PurM N-terminal domain-like 0.58 44.0 3.48e-01 81.1% 41.8%
2551155 301.6.1.1 a+b three layers › Bacillus chorismate mutase-like › Tubulin C-terminal domain-like › Tubulin C-terminal domain-like › Tubulin_C 0.57 45.0 3.75e-01 84.9% 46.9%
5054342 301.2.1.1 a+b three layers › Bacillus chorismate mutase-like › PurM N-terminal domain-like › PurM N-terminal domain-like › AIRS 0.57 44.0 3.63e-01 81.1% 50.0%
4961560 298.1.1.3 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Inos-1-P_synth 0.57 43.0 4.34e-01 80.2% 82.9%
4457354 298.1.1.13 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › AcetDehyd-dimer 0.57 43.0 4.00e-01 83.0% 62.1%
3339440 3008.1.1.0 a+b three layers › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 0.57 48.0 4.90e-01 94.3% 98.1%
3963173 298.1.1.13 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › AcetDehyd-dimer 0.55 40.0 3.58e-01 80.2% 52.3%
5054344 301.2.1.0 a+b three layers › Bacillus chorismate mutase-like › PurM N-terminal domain-like › PurM N-terminal domain-like 0.55 49.0 3.90e-01 100.0% 91.8%
4950990 301.2.1.0 a+b three layers › Bacillus chorismate mutase-like › PurM N-terminal domain-like › PurM N-terminal domain-like 0.54 47.0 3.87e-01 97.2% 96.4%
3835458 298.1.1.9 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › DapB_C 0.54 45.0 4.37e-01 96.2% 80.8%
4491858 3008.1.1.0 a+b three layers › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 0.54 41.0 4.35e-01 85.8% 96.7%
4080987 298.1.1.13 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › AcetDehyd-dimer 0.54 43.0 3.71e-01 88.7% 54.7%
4972086 301.2.1.0 a+b three layers › Bacillus chorismate mutase-like › PurM N-terminal domain-like › PurM N-terminal domain-like 0.52 46.0 3.60e-01 99.1% 49.6%
5017379 301.2.1.1 a+b three layers › Bacillus chorismate mutase-like › PurM N-terminal domain-like › PurM N-terminal domain-like › AIRS 0.52 45.0 3.78e-01 100.0% 95.4%
3402185 3008.1.1.2 a+b three layers › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DUF5915 0.51 45.0 4.52e-01 96.2% 100.0%
3411409 301.2.1.1 a+b three layers › Bacillus chorismate mutase-like › PurM N-terminal domain-like › PurM N-terminal domain-like › AIRS 0.51 37.0 3.13e-01 77.4% 96.3%