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rifoxyb1_full_scaffold_4_prodigal-single.1__X__X__00185
Bact-Virrifoxyb1_full_scaffold_4_prodigal-single.1__X__X__00185
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 12-117
Domain cluster:
rep: MT889387.1__QOP66146.1__SEA_DANIELLEIGNACE_5__00005__D28-163
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05866.17 best | RusA | 62.0 | 1.20e-16 | 99.1% | 93.5% |
CATH (34)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1q8rA00 | 3.30.1330.70 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Holliday junction resolvase RusA | 0.85 | 78.0 | 7.54e-01 | 100.0% | 88.1% |
| 2xkbL00 | 3.40.50.1440 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Tubulin/FtsZ, GTPase domain | 0.71 | 54.0 | 3.67e-01 | 84.0% | 22.7% |
| 1ofuA02 | 3.30.1330.20 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Tubulin/FtsZ, C-terminal domain | 0.65 | 48.0 | 5.05e-01 | 84.0% | 87.1% |
| 1oi2A02 | 3.30.1180.20 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › Dihydroxyacetone kinase; domain 2 | 0.64 | 50.0 | 4.40e-01 | 84.9% | 66.0% |
| 5l16A01 | 3.30.1330.10 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › PurM-like, N-terminal domain | 0.64 | 48.0 | 4.63e-01 | 84.9% | 69.1% |
| 3kizA01 | 3.30.1330.10 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › PurM-like, N-terminal domain | 0.63 | 51.0 | 4.63e-01 | 85.8% | 66.7% |
| 2otmA00 | 3.30.1330.40 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › RutC-like | 0.63 | 52.0 | 4.69e-01 | 100.0% | 64.2% |
| 5aq1A02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.62 | 48.0 | 3.57e-01 | 83.0% | 61.3% |
| 3d01E00 | 3.30.1330.40 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › RutC-like | 0.62 | 52.0 | 4.61e-01 | 100.0% | 63.9% |
| 4nq3A01 | 3.30.1330.170 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Cyanuric acid hydrolase/Barbiturase, RU A | 0.61 | 46.0 | 4.74e-01 | 97.2% | 85.7% |
| 6jw7A01 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.61 | 46.0 | 3.84e-01 | 79.2% | 65.4% |
| 4ei7B01 | 3.30.1330.190 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › | 0.61 | 52.0 | 4.74e-01 | 100.0% | 68.7% |
| 4b45A02 | 3.30.1330.20 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Tubulin/FtsZ, C-terminal domain | 0.61 | 45.0 | 4.36e-01 | 98.1% | 70.3% |
| 1vk3A02 | 3.30.1330.10 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › PurM-like, N-terminal domain | 0.61 | 43.0 | 4.00e-01 | 81.1% | 57.8% |
| 2cvoA02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.61 | 46.0 | 3.98e-01 | 81.1% | 60.5% |
| 1vknA02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.60 | 45.0 | 3.95e-01 | 80.2% | 61.2% |
| 1dihA02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.60 | 46.0 | 4.58e-01 | 81.1% | 88.9% |
| 1vk3A03 | 3.30.1330.10 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › PurM-like, N-terminal domain | 0.60 | 45.0 | 4.09e-01 | 81.1% | 58.5% |
| 1nyrA03 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.59 | 45.0 | 3.25e-01 | 84.0% | 27.2% |
| 2ozpA02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.59 | 44.0 | 3.84e-01 | 80.2% | 58.1% |
| 2zf8A02 | 3.30.1330.60 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › OmpA-like domain | 0.59 | 41.0 | 4.30e-01 | 84.0% | 82.6% |
| 2hsnA01 | 3.40.30.170 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › | 0.59 | 26.0 | 3.57e-01 | 97.2% | 83.0% |
| 3rycB02 | 3.30.1330.20 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Tubulin/FtsZ, C-terminal domain | 0.58 | 45.0 | 4.47e-01 | 84.0% | 77.2% |
| 3cb2A02 | 3.30.1330.20 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Tubulin/FtsZ, C-terminal domain | 0.58 | 45.0 | 4.64e-01 | 84.0% | 87.9% |
| 1tvkA02 | 3.30.1330.20 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Tubulin/FtsZ, C-terminal domain | 0.58 | 45.0 | 4.45e-01 | 84.0% | 83.5% |
| 3a32A01 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.58 | 45.0 | 3.22e-01 | 84.0% | 29.9% |
| 3uh0A01 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.57 | 44.0 | 3.21e-01 | 84.9% | 29.4% |
| 1nvmB02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.55 | 40.0 | 3.63e-01 | 80.2% | 53.9% |
| 6aeoB01 | 3.30.1330.60 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › OmpA-like domain | 0.54 | 47.0 | 4.39e-01 | 99.1% | 78.5% |
| 1z6nA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.53 | 47.0 | 4.09e-01 | 99.1% | 88.6% |
| 1cliB01 | 3.30.1330.10 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › PurM-like, N-terminal domain | 0.53 | 47.0 | 4.24e-01 | 100.0% | 94.0% |
| 3mcqA01 | 3.30.1330.10 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › PurM-like, N-terminal domain | 0.52 | 46.0 | 4.31e-01 | 100.0% | 84.3% |
| 3fovA00 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.51 | 32.0 | 3.31e-01 | 71.7% | 64.7% |
| 2rb9A01 | 3.30.1330.10 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › PurM-like, N-terminal domain | 0.51 | 46.0 | 4.17e-01 | 100.0% | 93.8% |
ECOD (51)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3982309 | 301.4.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › Holliday junction resolvase RusA › Holliday junction resolvase RusA › RusA | 0.89 | 83.0 | 7.90e-01 | 100.0% | 86.7% |
| 5061637 | 301.4.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › Holliday junction resolvase RusA › Holliday junction resolvase RusA › RusA | 0.86 | 82.0 | 7.22e-01 | 100.0% | 88.3% |
| 318712 | 301.4.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › Holliday junction resolvase RusA › Holliday junction resolvase RusA › RusA | 0.86 | 79.0 | 7.58e-01 | 100.0% | 86.7% |
| 3963267 | 301.4.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › Holliday junction resolvase RusA › Holliday junction resolvase RusA › RusA | 0.84 | 80.0 | 7.48e-01 | 100.0% | 88.0% |
| 4156345 | 301.4.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › Holliday junction resolvase RusA › Holliday junction resolvase RusA › RusA | 0.83 | 78.0 | 7.46e-01 | 100.0% | 88.3% |
| 5083025 | 301.4.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › Holliday junction resolvase RusA › Holliday junction resolvase RusA › RusA | 0.78 | 74.0 | 6.94e-01 | 100.0% | 88.8% |
| 4537541 | 301.4.1.0 ↗ | a+b three layers › Bacillus chorismate mutase-like › Holliday junction resolvase RusA › Holliday junction resolvase RusA | 0.75 | 69.0 | 6.62e-01 | 100.0% | 91.7% |
| 3728115 | 301.13.1.2 ↗ | a+b three layers › Bacillus chorismate mutase-like › DAK1/DegV C-terminal domain › DAK1/DegV C-terminal domain › Dak1 | 0.71 | 55.0 | 4.61e-01 | 82.1% | 50.0% |
| 405240 | 301.6.1.7 ↗ | a+b three layers › Bacillus chorismate mutase-like › Tubulin C-terminal domain-like › Tubulin C-terminal domain-like › TubZ-like_C | 0.70 | 54.0 | 4.69e-01 | 84.0% | 53.4% |
| 4558877 | 301.6.1.0 ↗ | a+b three layers › Bacillus chorismate mutase-like › Tubulin C-terminal domain-like › Tubulin C-terminal domain-like | 0.69 | 51.0 | 4.77e-01 | 81.1% | 63.1% |
| 3937552 | 301.13.1.2 ↗ | a+b three layers › Bacillus chorismate mutase-like › DAK1/DegV C-terminal domain › DAK1/DegV C-terminal domain › Dak1 | 0.68 | 50.0 | 4.61e-01 | 82.1% | 60.7% |
| 4948826 | 301.6.1.2 ↗ | a+b three layers › Bacillus chorismate mutase-like › Tubulin C-terminal domain-like › Tubulin C-terminal domain-like › FtsZ_C | 0.66 | 48.0 | 5.13e-01 | 81.1% | 88.8% |
| 4381590 | 301.13.1.2 ↗ | a+b three layers › Bacillus chorismate mutase-like › DAK1/DegV C-terminal domain › DAK1/DegV C-terminal domain › Dak1 | 0.65 | 50.0 | 4.39e-01 | 82.1% | 55.5% |
| 4443932 | 3008.1.1.2 ↗ | a+b three layers › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DUF5915 | 0.65 | 47.0 | 5.08e-01 | 97.2% | 94.1% |
| 3339457 | 301.13.1.2 ↗ | a+b three layers › Bacillus chorismate mutase-like › DAK1/DegV C-terminal domain › DAK1/DegV C-terminal domain › Dak1 | 0.64 | 50.0 | 5.11e-01 | 84.9% | 88.0% |
| 3811404 | 301.13.1.2 ↗ | a+b three layers › Bacillus chorismate mutase-like › DAK1/DegV C-terminal domain › DAK1/DegV C-terminal domain › Dak1 | 0.64 | 49.0 | 4.31e-01 | 84.9% | 53.3% |
| 3688584 | 301.7.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › YjgF-like › YjgF-like › Ribonuc_L-PSP | 0.63 | 48.0 | 4.43e-01 | 81.1% | 61.4% |
| 4332452 | 301.2.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › PurM N-terminal domain-like › PurM N-terminal domain-like › AIRS | 0.63 | 46.0 | 4.60e-01 | 84.9% | 73.6% |
| 4971955 | 301.7.1.4 ↗ | a+b three layers › Bacillus chorismate mutase-like › YjgF-like › YjgF-like › YjgF_endoribonc | 0.63 | 53.0 | 4.75e-01 | 100.0% | 65.5% |
| 4987617 | 301.6.1.3 ↗ | a+b three layers › Bacillus chorismate mutase-like › Tubulin C-terminal domain-like › Tubulin C-terminal domain-like › CetZ_C | 0.63 | 46.0 | 4.03e-01 | 84.9% | 49.7% |
| 4999242 | 301.2.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › PurM N-terminal domain-like › PurM N-terminal domain-like › AIRS | 0.63 | 50.0 | 4.18e-01 | 85.8% | 49.2% |
| 5052553 | 301.2.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › PurM N-terminal domain-like › PurM N-terminal domain-like › AIRS | 0.62 | 46.0 | 4.17e-01 | 81.1% | 57.9% |
| 3979733 | 301.3.1.0 ↗ | a+b three layers › Bacillus chorismate mutase-like › OmpA-like › OmpA-like | 0.62 | 47.0 | 4.72e-01 | 84.0% | 81.0% |
| 4172925 | 298.1.1.9 ↗ | a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › DapB_C | 0.62 | 44.0 | 4.68e-01 | 80.2% | 86.7% |
| 4947539 | 301.2.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › PurM N-terminal domain-like › PurM N-terminal domain-like › AIRS | 0.62 | 48.0 | 4.12e-01 | 84.0% | 51.8% |
| 4097489 | 301.7.1.8 ↗ | a+b three layers › Bacillus chorismate mutase-like › YjgF-like › YjgF-like › PF29624 | 0.61 | 45.0 | 4.31e-01 | 77.4% | 68.0% |
| 5004699 | 298.3.1.2 ↗ | a+b two layers › FwdE/GAPDH domain-like › Serine dehydratase beta chain-like › Serine dehydratase beta chain-like › PGDH_inter | 0.60 | 54.0 | 4.99e-01 | 99.1% | 78.5% |
| 4165783 | 298.3.1.2 ↗ | a+b two layers › FwdE/GAPDH domain-like › Serine dehydratase beta chain-like › Serine dehydratase beta chain-like › PGDH_inter | 0.60 | 53.0 | 4.93e-01 | 99.1% | 78.5% |
| 5010286 | 301.2.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › PurM N-terminal domain-like › PurM N-terminal domain-like › AIRS | 0.60 | 45.0 | 3.92e-01 | 80.2% | 52.7% |
| None | — | 0.59 | 45.0 | 3.73e-01 | 80.2% | 45.8% | |
| 5006891 | 2003.1.6.12 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Tubulin nucleotide-binding domain-like › CetZ_C | 0.59 | 45.0 | 3.10e-01 | 85.8% | 22.1% |
| 4527021 | 301.3.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › OmpA-like › OmpA-like › OmpA | 0.59 | 48.0 | 4.76e-01 | 99.1% | 83.5% |
| 5031370 | 301.2.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › PurM N-terminal domain-like › PurM N-terminal domain-like › AIRS | 0.58 | 47.0 | 4.20e-01 | 96.2% | 60.0% |
| 3928594 | 3008.1.1.0 ↗ | a+b three layers › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | 0.58 | 46.0 | 4.70e-01 | 85.8% | 97.0% |
| None | — | 0.58 | 44.0 | 3.62e-01 | 81.1% | 44.1% | |
| 4999237 | 301.2.1.0 ↗ | a+b three layers › Bacillus chorismate mutase-like › PurM N-terminal domain-like › PurM N-terminal domain-like | 0.58 | 44.0 | 3.48e-01 | 81.1% | 41.8% |
| 2551155 | 301.6.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › Tubulin C-terminal domain-like › Tubulin C-terminal domain-like › Tubulin_C | 0.57 | 45.0 | 3.75e-01 | 84.9% | 46.9% |
| 5054342 | 301.2.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › PurM N-terminal domain-like › PurM N-terminal domain-like › AIRS | 0.57 | 44.0 | 3.63e-01 | 81.1% | 50.0% |
| 4961560 | 298.1.1.3 ↗ | a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Inos-1-P_synth | 0.57 | 43.0 | 4.34e-01 | 80.2% | 82.9% |
| 4457354 | 298.1.1.13 ↗ | a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › AcetDehyd-dimer | 0.57 | 43.0 | 4.00e-01 | 83.0% | 62.1% |
| 3339440 | 3008.1.1.0 ↗ | a+b three layers › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | 0.57 | 48.0 | 4.90e-01 | 94.3% | 98.1% |
| 3963173 | 298.1.1.13 ↗ | a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › AcetDehyd-dimer | 0.55 | 40.0 | 3.58e-01 | 80.2% | 52.3% |
| 5054344 | 301.2.1.0 ↗ | a+b three layers › Bacillus chorismate mutase-like › PurM N-terminal domain-like › PurM N-terminal domain-like | 0.55 | 49.0 | 3.90e-01 | 100.0% | 91.8% |
| 4950990 | 301.2.1.0 ↗ | a+b three layers › Bacillus chorismate mutase-like › PurM N-terminal domain-like › PurM N-terminal domain-like | 0.54 | 47.0 | 3.87e-01 | 97.2% | 96.4% |
| 3835458 | 298.1.1.9 ↗ | a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › DapB_C | 0.54 | 45.0 | 4.37e-01 | 96.2% | 80.8% |
| 4491858 | 3008.1.1.0 ↗ | a+b three layers › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | 0.54 | 41.0 | 4.35e-01 | 85.8% | 96.7% |
| 4080987 | 298.1.1.13 ↗ | a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › AcetDehyd-dimer | 0.54 | 43.0 | 3.71e-01 | 88.7% | 54.7% |
| 4972086 | 301.2.1.0 ↗ | a+b three layers › Bacillus chorismate mutase-like › PurM N-terminal domain-like › PurM N-terminal domain-like | 0.52 | 46.0 | 3.60e-01 | 99.1% | 49.6% |
| 5017379 | 301.2.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › PurM N-terminal domain-like › PurM N-terminal domain-like › AIRS | 0.52 | 45.0 | 3.78e-01 | 100.0% | 95.4% |
| 3402185 | 3008.1.1.2 ↗ | a+b three layers › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DUF5915 | 0.51 | 45.0 | 4.52e-01 | 96.2% | 100.0% |
| 3411409 | 301.2.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › PurM N-terminal domain-like › PurM N-terminal domain-like › AIRS | 0.51 | 37.0 | 3.13e-01 | 77.4% | 96.3% |