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rifoxyb1_full_scaffold_4_prodigal-single.1__X__X__00192
Bact-Virrifoxyb1_full_scaffold_4_prodigal-single.1__X__X__00192
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-120
Domain cluster:
rep: MN988533.1__QIG73729.1__EVC05_037__00037__D4-151
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04098.22 best | Rad52_Rad22 | 38.3 | 1.80e-09 | 100.0% | 85.6% |
CATH (56)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1h2iA01 | 3.30.390.80 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › DNA repair protein Rad52/59/22 | 0.88 | 84.0 | 7.71e-01 | 100.0% | 89.2% |
| 2mdrA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.70 | 48.0 | 5.26e-01 | 96.6% | 86.2% |
| 3k0zA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.68 | 49.0 | 4.48e-01 | 78.8% | 58.4% |
| 2jq5A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.62 | 39.0 | 3.84e-01 | 74.6% | 57.8% |
| 3ebtA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.61 | 43.0 | 4.25e-01 | 89.0% | 67.2% |
| 4e72A01 | 3.30.565.40 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like | 0.61 | 37.0 | 3.65e-01 | 78.0% | 57.3% |
| 4n4rB00 | 3.30.160.150 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain | 0.60 | 52.0 | 4.77e-01 | 92.4% | 88.1% |
| 3en8A01 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.60 | 40.0 | 4.14e-01 | 78.8% | 70.5% |
| 2gexA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.60 | 47.0 | 4.35e-01 | 81.4% | 78.1% |
| 3g0kA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.60 | 41.0 | 4.00e-01 | 78.0% | 64.1% |
| 4lgqA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.60 | 43.0 | 4.20e-01 | 84.7% | 66.9% |
| 2cc3A00 | 3.10.450.230 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein | 0.59 | 44.0 | 4.13e-01 | 77.1% | 68.1% |
| 2imjD01 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.59 | 42.0 | 3.98e-01 | 79.7% | 60.6% |
| 2k54A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.59 | 42.0 | 4.16e-01 | 79.7% | 69.9% |
| 3er7B00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.59 | 43.0 | 4.27e-01 | 78.8% | 72.4% |
| 4kwyA00 | 3.30.160.150 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain | 0.59 | 51.0 | 4.89e-01 | 94.1% | 93.4% |
| 3ec9A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.59 | 45.0 | 4.37e-01 | 79.7% | 73.6% |
| 1ar0A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.58 | 42.0 | 4.12e-01 | 78.8% | 69.6% |
| 4h3uA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.58 | 43.0 | 4.24e-01 | 78.8% | 70.8% |
| 5evhA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.58 | 40.0 | 3.98e-01 | 79.7% | 68.6% |
| 3hx8A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.58 | 43.0 | 4.24e-01 | 78.8% | 72.7% |
| 3fh1A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.58 | 40.0 | 4.00e-01 | 78.8% | 68.9% |
| 4kz1A00 | 3.10.450.230 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein | 0.58 | 42.0 | 4.08e-01 | 77.1% | 71.9% |
| 2a15A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.57 | 41.0 | 3.97e-01 | 89.0% | 65.4% |
| 3f14A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.57 | 40.0 | 4.14e-01 | 78.0% | 75.9% |
| 3gwrB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.57 | 42.0 | 4.18e-01 | 78.8% | 72.4% |
| 3lygA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.57 | 41.0 | 4.17e-01 | 80.5% | 73.3% |
| 3cnxA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.57 | 42.0 | 4.06e-01 | 78.8% | 73.9% |
| 1f49A05 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.57 | 41.0 | 3.04e-01 | 73.7% | 83.4% |
| 5aigA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.57 | 41.0 | 4.09e-01 | 78.8% | 71.8% |
| 3ehcB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.56 | 42.0 | 4.09e-01 | 79.7% | 71.1% |
| 3kkgA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.56 | 43.0 | 4.03e-01 | 79.7% | 67.4% |
| 3blzA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.56 | 40.0 | 3.97e-01 | 78.8% | 70.2% |
| 2ckfB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.56 | 43.0 | 3.82e-01 | 80.5% | 72.9% |
| 6p3lA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.56 | 37.0 | 3.83e-01 | 78.8% | 69.6% |
| 3ecfA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.56 | 42.0 | 4.15e-01 | 80.5% | 73.4% |
| 3ff2A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.56 | 40.0 | 4.10e-01 | 78.8% | 76.1% |
| 3f9sB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.56 | 42.0 | 4.01e-01 | 80.5% | 72.3% |
| 3k7cA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.55 | 41.0 | 4.27e-01 | 80.5% | 85.2% |
| 2joxA00 | 2.60.40.4240 | Mainly Beta › Sandwich › Immunoglobulin-like › Transcription activator, Churchill | 0.55 | 41.0 | 4.25e-01 | 97.5% | 87.7% |
| 2qiyA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.55 | 40.0 | 3.92e-01 | 91.5% | 68.7% |
| 3robA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 41.0 | 3.96e-01 | 78.8% | 71.8% |
| 3ga2A00 | 3.30.2170.10 | Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily | 0.54 | 45.0 | 3.57e-01 | 89.8% | 56.8% |
| 3ff0A01 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 41.0 | 3.87e-01 | 80.5% | 71.6% |
| 2f86B00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 39.0 | 3.87e-01 | 78.0% | 72.9% |
| 4fwwA01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.53 | 38.0 | 2.55e-01 | 73.7% | 39.2% |
| 2bngC00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 38.0 | 3.66e-01 | 78.8% | 62.9% |
| 1sjwA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 44.0 | 4.19e-01 | 91.5% | 75.4% |
| 4rljA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.53 | 38.0 | 3.51e-01 | 72.9% | 88.9% |
| 3gzbA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 39.0 | 3.63e-01 | 80.5% | 66.2% |
| 1jkgA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 40.0 | 3.78e-01 | 81.4% | 71.9% |
| 2r76A00 | 3.30.160.150 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain | 0.51 | 44.0 | 4.26e-01 | 94.1% | 94.7% |
| 7c5wA01 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 38.0 | 3.61e-01 | 80.5% | 77.0% |
| 2carB00 | 3.90.950.10 | Alpha Beta › Alpha-Beta Complex › Maf protein › | 0.51 | 44.0 | 3.81e-01 | 97.5% | 99.0% |
| 2w35A00 | 3.30.2170.10 | Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily | 0.50 | 42.0 | 3.43e-01 | 90.7% | 57.8% |
| 1yq2A05 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.50 | 39.0 | 2.90e-01 | 82.2% | 97.3% |
ECOD (80)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3816855 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.91 | 87.0 | 8.56e-01 | 100.0% | 94.4% |
| 4018556 | 330.1.1.4 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Rad52_Rad22 | 0.89 | 86.0 | 7.58e-01 | 100.0% | 83.7% |
| 3262206 | 330.1.1.4 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Rad52_Rad22 | 0.89 | 85.0 | 7.50e-01 | 100.0% | 77.5% |
| 1871052 | 330.1.1.4 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Rad52_Rad22 | 0.88 | 84.0 | 7.01e-01 | 100.0% | 70.2% |
| 3177409 | 330.1.1.13 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Mgm101p | 0.84 | 78.0 | 6.81e-01 | 100.0% | 69.7% |
| 3177367 | 330.1.1.4 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Rad52_Rad22 | 0.78 | 72.0 | 6.43e-01 | 95.8% | 90.3% |
| 3786132 | 330.1.1.4 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Rad52_Rad22 | 0.77 | 70.0 | 6.49e-01 | 95.8% | 89.7% |
| 3283651 | 222.1.1.9 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › MaoC_dehydrat_N | 0.70 | 35.0 | 3.51e-01 | 79.7% | 46.4% |
| 3333267 | 330.1.1.5 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DND1_DSRM | 0.70 | 52.0 | 5.67e-01 | 88.1% | 95.8% |
| 3280323 | 243.1.1.7 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › MecA_N | 0.70 | 46.0 | 4.87e-01 | 77.1% | 75.2% |
| 2617498 | 243.1.1.18 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 | 0.69 | 48.0 | 5.01e-01 | 78.0% | 76.1% |
| 3950757 | 243.1.1.7 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › MecA_N | 0.68 | 45.0 | 4.57e-01 | 72.0% | 67.8% |
| 3701230 | 5.1.3.28 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_3 | 0.68 | 42.0 | 2.83e-01 | 94.1% | 17.4% |
| 3233863 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.68 | 40.0 | 2.65e-01 | 94.9% | 14.9% |
| 3443030 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.67 | 44.0 | 5.11e-01 | 81.4% | 97.5% |
| 3609908 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.66 | 48.0 | 5.01e-01 | 86.4% | 81.8% |
| 3227179 | 243.1.1.85 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF26531 | 0.66 | 42.0 | 4.21e-01 | 78.8% | 62.5% |
| 3451695 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.65 | 47.0 | 5.28e-01 | 86.4% | 98.9% |
| 3955856 | 243.1.1.18 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 | 0.63 | 46.0 | 4.48e-01 | 80.5% | 68.5% |
| 2388320 | 243.1.1.18 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 | 0.62 | 45.0 | 4.33e-01 | 89.0% | 66.7% |
| 3470047 | 243.1.1.2 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 | 0.61 | 41.0 | 4.63e-01 | 88.1% | 94.1% |
| 6400 | 243.1.1.18 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 | 0.61 | 43.0 | 4.36e-01 | 77.1% | 72.9% |
| 5071439 | 243.1.1.10 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL | 0.61 | 46.0 | 4.37e-01 | 78.8% | 70.5% |
| 3838060 | 7503.1.1.4 ↗ | a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › LptE | 0.61 | 54.0 | 4.82e-01 | 95.8% | 81.8% |
| 3707549 | 5.1.3.28 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_3 | 0.60 | 41.0 | 2.85e-01 | 85.6% | 20.0% |
| 3996443 | 2007.2.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase | 0.60 | 41.0 | 3.18e-01 | 70.3% | 47.8% |
| 3223708 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.60 | 43.0 | 4.34e-01 | 75.4% | 73.3% |
| 3958160 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.60 | 38.0 | 3.87e-01 | 77.1% | 63.3% |
| 3961916 | 243.1.1.10 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL | 0.60 | 43.0 | 4.37e-01 | 79.7% | 76.5% |
| 3953609 | 243.1.1.18 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 | 0.60 | 38.0 | 3.92e-01 | 77.1% | 66.1% |
| 4927976 | 243.1.1.18 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 | 0.60 | 41.0 | 4.04e-01 | 84.7% | 66.4% |
| 3281821 | 243.1.1.18 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 | 0.59 | 44.0 | 4.29e-01 | 91.5% | 70.8% |
| 6403 | 243.1.1.6 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › VirB8 | 0.59 | 44.0 | 4.17e-01 | 77.1% | 70.0% |
| 3217509 | 243.1.1.46 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF5382 | 0.59 | 44.0 | 4.11e-01 | 78.8% | 64.7% |
| 3516488 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.59 | 42.0 | 4.12e-01 | 77.1% | 66.9% |
| 3184149 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.59 | 42.0 | 4.06e-01 | 78.8% | 64.4% |
| 3474450 | 243.1.1.2 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 | 0.59 | 41.0 | 4.11e-01 | 78.8% | 68.8% |
| 3938215 | 243.1.1.28 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF4440 | 0.59 | 41.0 | 3.95e-01 | 78.8% | 61.9% |
| 5033887 | 243.1.1.18 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 | 0.59 | 40.0 | 4.08e-01 | 78.8% | 71.3% |
| 3244404 | 243.1.1.28 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF4440 | 0.58 | 42.0 | 4.24e-01 | 78.8% | 72.4% |
| 3957839 | 243.1.1.18 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 | 0.58 | 43.0 | 4.20e-01 | 82.2% | 70.0% |
| 3418771 | 243.1.1.49 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF2358 | 0.58 | 43.0 | 4.23e-01 | 78.8% | 72.3% |
| 3236685 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.58 | 39.0 | 4.04e-01 | 72.0% | 71.3% |
| 2553892 | 243.1.1.18 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 | 0.58 | 42.0 | 4.23e-01 | 80.5% | 74.2% |
| 169507 | 243.1.1.18 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 | 0.58 | 40.0 | 4.15e-01 | 78.0% | 75.9% |
| 3744079 | 243.1.1.18 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 | 0.57 | 45.0 | 4.46e-01 | 83.9% | 78.4% |
| 361002 | 243.1.1.25 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_3 | 0.57 | 42.0 | 4.17e-01 | 78.8% | 71.9% |
| 1562270 | 243.1.1.18 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 | 0.57 | 41.0 | 4.12e-01 | 78.8% | 71.8% |
| 5076453 | 243.1.1.10 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL | 0.57 | 43.0 | 4.42e-01 | 79.7% | 83.5% |
| 3743876 | 331.3.1.17 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt | 0.57 | 44.0 | 3.64e-01 | 83.9% | 71.8% |
| 3829053 | 243.1.1.49 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF2358 | 0.56 | 43.0 | 4.06e-01 | 79.7% | 67.9% |
| 5025112 | 4272.1.1.1 ↗ | a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa | 0.56 | 37.0 | 3.64e-01 | 72.0% | 62.4% |
| 137314 | 243.1.1.10 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL | 0.56 | 43.0 | 4.03e-01 | 79.7% | 67.4% |
| 3735183 | 243.1.1.18 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 | 0.56 | 42.0 | 4.13e-01 | 81.4% | 73.6% |
| 3782223 | 331.3.1.17 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt | 0.56 | 44.0 | 3.56e-01 | 83.9% | 59.1% |
| 4003224 | 9.1.1.48 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_10 | 0.56 | 42.0 | 3.67e-01 | 79.7% | 52.8% |
| 5048351 | 243.1.1.18 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 | 0.56 | 42.0 | 3.97e-01 | 81.4% | 64.8% |
| 4978484 | 243.1.1.18 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 | 0.56 | 43.0 | 4.18e-01 | 83.1% | 74.6% |
| 3283292 | 243.1.1.18 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 | 0.55 | 43.0 | 4.17e-01 | 82.2% | 76.2% |
| 3282929 | 243.1.1.18 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 | 0.55 | 40.0 | 4.08e-01 | 80.5% | 75.8% |
| 5038819 | 2003.1.5.81 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 | 0.55 | 41.0 | 3.21e-01 | 77.1% | 91.1% |
| 3839915 | 243.1.1.6 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › VirB8 | 0.55 | 40.0 | 3.86e-01 | 77.1% | 67.1% |
| 3289399 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.55 | 38.0 | 3.80e-01 | 78.8% | 68.0% |
| 4540639 | 243.1.1.5 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › Tim44 | 0.55 | 42.0 | 4.10e-01 | 87.3% | 73.1% |
| 4011330 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.54 | 40.0 | 3.86e-01 | 78.8% | 67.4% |
| 3736685 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.54 | 42.0 | 3.71e-01 | 82.2% | 86.5% |
| 4962436 | 243.1.1.18 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 | 0.54 | 41.0 | 4.01e-01 | 83.9% | 73.8% |
| 3830041 | 243.1.1.2 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 | 0.54 | 41.0 | 3.99e-01 | 80.5% | 72.3% |
| 2785694 | 243.1.1.18 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 | 0.54 | 41.0 | 4.04e-01 | 82.2% | 75.8% |
| 3567909 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 37.0 | 3.98e-01 | 70.3% | 97.0% |
| 4064564 | 7504.1.1.1 ↗ | a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Ham1p_like | 0.53 | 46.0 | 3.79e-01 | 93.2% | 97.6% |
| 3195470 | 331.3.1.17 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt | 0.53 | 42.0 | 3.37e-01 | 83.9% | 68.3% |
| 3282693 | 243.1.1.18 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 | 0.52 | 41.0 | 3.80e-01 | 85.6% | 81.2% |
| 3241023 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.52 | 40.0 | 2.75e-01 | 83.9% | 99.6% |
| 3579994 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 39.0 | 3.92e-01 | 78.0% | 96.7% |
| 3229203 | 2484.1.1.50 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Dimer_Tnp_hAT | 0.51 | 39.0 | 2.71e-01 | 83.1% | 98.7% |
| 3953670 | 243.1.1.2 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 | 0.51 | 39.0 | 3.69e-01 | 82.2% | 76.7% |
| 3959772 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.51 | 31.0 | 2.81e-01 | 87.3% | 41.8% |
| 4972572 | 2484.1.1.59 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA | 0.50 | 41.0 | 2.95e-01 | 89.0% | 72.7% |
| 3937047 | 9.1.1.55 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF7045 | 0.50 | 38.0 | 3.83e-01 | 89.0% | 79.2% |
D2
high
residues 145-201
Domain cluster:
representative
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4hteA01 | 1.20.58.1730 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.63 | 41.0 | 3.09e-01 | 100.0% | 27.3% |
| 4txiA03 | 1.10.418.10 | Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Calponin-like domain | 0.58 | 45.0 | 3.94e-01 | 96.5% | 98.1% |
| 1tteA02 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.57 | 39.0 | 3.93e-01 | 87.7% | 71.9% |
| 3ilkA02 | 1.10.8.590 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.56 | 46.0 | 4.38e-01 | 100.0% | 79.4% |
| 2n00A00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.56 | 45.0 | 3.98e-01 | 100.0% | 82.1% |
| 2x0kA01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.55 | 38.0 | 2.75e-01 | 73.7% | 70.4% |
| 1wlmA01 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.53 | 45.0 | 3.81e-01 | 100.0% | 75.7% |
| 2b8iA00 | 1.20.1280.100 | Mainly Alpha › Up-down Bundle › Monooxygenase › Pas factor, saposin domain | 0.53 | 40.0 | 3.66e-01 | 91.2% | 61.0% |
| 5xe7A01 | 1.20.140.160 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain | 0.52 | 39.0 | 3.02e-01 | 96.5% | 34.5% |
| 3iieB03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.51 | 42.0 | 3.71e-01 | 94.7% | 68.2% |
| 3cxbA03 | 1.10.1740.30 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › Secreted effector protein SifA helical domain | 0.50 | 41.0 | 3.76e-01 | 96.5% | 69.1% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4115978 | 103.1.1.6 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C | 0.60 | 47.0 | 4.53e-01 | 98.2% | 75.4% |
| 3980669 | 2004.1.1.363 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase+UvrD_C | 0.58 | 48.0 | 2.85e-01 | 98.2% | 11.9% |
| 3587199 | 101.39.1.1 ↗ | alpha arrays › HTH › Replication protein RepB C-terminal domain › Replication protein RepB C-terminal domain › RepB_C | 0.57 | 40.0 | 3.97e-01 | 73.7% | 70.0% |
| 3999359 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.57 | 40.0 | 3.22e-01 | 77.2% | 68.0% |
| 3375205 | 7095.1.1.1 ↗ | alpha arrays › C-terminal domain of DEAH helicase DHX37 › C-terminal domain of DEAH helicase DHX37 › C-terminal domain of DEAH helicase DHX37 › DHX37_C | 0.55 | 40.0 | 3.64e-01 | 78.9% | 61.3% |
| 3185106 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 36.0 | 3.38e-01 | 70.2% | 77.3% |
| 3652150 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 37.0 | 3.22e-01 | 77.2% | 45.3% |
| 5009561 | 5054.1.1.0 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels | 0.53 | 37.0 | 3.28e-01 | 71.9% | 52.9% |
| 4782204 | 283.1.1.0 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase | 0.53 | 36.0 | 2.43e-01 | 73.7% | 43.9% |
| 3408658 | 190.1.1.0 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box | 0.50 | 32.0 | 3.16e-01 | 89.5% | 60.0% |
| 3230883 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.50 | 34.0 | 3.18e-01 | 71.9% | 58.7% |