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rifoxyb1_full_scaffold_4_prodigal-single.1__X__X__00231

Bact-Vir

rifoxyb1_full_scaffold_4_prodigal-single.1__X__X__00231

Identity

Kingdom:
phage

Quality

64.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-111
PDB
Domain cluster: representative
D2 high residues 296-361_374-444
PDB
Domain cluster: representative
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ptfA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.64 51.0 5.05e-01 87.6% 78.9%
3bpkA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.62 57.0 5.19e-01 100.0% 82.1%
4ci2B02 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.61 40.0 4.23e-01 70.1% 72.8%
5ejlA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.61 41.0 4.32e-01 94.9% 75.8%
3cp3A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.59 44.0 4.59e-01 87.6% 83.5%
1lp9E02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 28.0 3.52e-01 99.3% 85.0%
3eliA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.53 30.0 2.98e-01 100.0% 51.4%
1y12B00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.52 43.0 4.16e-01 89.1% 79.5%
3eehA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 36.0 3.84e-01 100.0% 83.6%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5003311 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.72 56.0 6.25e-01 87.6% 100.0%
4255707 1.1.12.1 ↗ beta barrels › cradle loop barrel › RIFT-related › barrel domain in QueA-like proteins › Queuosine_synth 0.67 41.0 4.16e-01 87.6% 60.0%
4319057 1.1.5.25 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.66 43.0 4.63e-01 94.9% 77.4%
4096792 1.1.5.10 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.63 58.0 5.03e-01 100.0% 74.1%
4033372 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.61 38.0 4.25e-01 81.8% 78.2%
4810019 1.1.13.57 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › PF30637 0.59 42.0 4.69e-01 87.6% 91.8%
3696371 1.1.5.10 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.59 54.0 4.57e-01 100.0% 69.7%
3948350 1.1.13.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_GPD 0.58 41.0 4.73e-01 86.1% 99.0%
3787756 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.56 46.0 4.42e-01 87.6% 82.3%
5079559 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.54 42.0 4.55e-01 88.3% 97.4%
3187986 1.1.8.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.54 37.0 4.15e-01 83.9% 89.5%
4964155 1.1.9.31 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › SRA_ScoMcrA 0.52 39.0 3.95e-01 84.7% 77.1%
4982153 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.52 43.0 3.42e-01 88.3% 48.5%
2832216 1.1.5.24 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 0.51 43.0 4.15e-01 89.1% 92.2%
3175088 331.3.1.5 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc 0.50 29.0 2.72e-01 100.0% 45.5%