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rifoxyb1_full_scaffold_4_prodigal-single.1__X__X__00234
Bact-Virrifoxyb1_full_scaffold_4_prodigal-single.1__X__X__00234
Identity
- Kingdom:
- phage
Quality
95.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-57
Domain cluster:
representative
CATH (43)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ktsA01 | 2.40.128.270 | Mainly Beta › Beta Barrel › Lipocalin › | 0.73 | 64.0 | 5.26e-01 | 100.0% | 99.0% |
| 4qrlA00 | 2.40.128.280 | Mainly Beta › Beta Barrel › Lipocalin › | 0.71 | 62.0 | 5.04e-01 | 100.0% | 93.6% |
| 4nswA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.68 | 59.0 | 4.79e-01 | 100.0% | 65.1% |
| 2p12A01 | 2.40.380.10 | Mainly Beta › Beta Barrel › FomD barrel-like fold › FomD-like | 0.64 | 47.0 | 3.46e-01 | 80.4% | 51.6% |
| 2oqbA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.64 | 54.0 | 4.49e-01 | 100.0% | 74.1% |
| 1egxA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.64 | 53.0 | 4.36e-01 | 100.0% | 72.2% |
| 4immA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.63 | 57.0 | 3.49e-01 | 100.0% | 99.7% |
| 6i8xA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.63 | 54.0 | 4.06e-01 | 100.0% | 88.6% |
| 1tj6A00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.63 | 53.0 | 4.31e-01 | 100.0% | 73.9% |
| 4omfB02 | 3.10.450.750 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.62 | 42.0 | 4.53e-01 | 71.4% | 91.5% |
| 2avtB01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.60 | 54.0 | 3.76e-01 | 98.2% | 72.1% |
| 2f1lA01 | 2.40.30.60 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › RimM | 0.60 | 50.0 | 4.33e-01 | 94.6% | 79.8% |
| 2kb3A01 | 2.60.200.20 | Mainly Beta › Sandwich › Tumour Suppressor Smad4 › | 0.60 | 51.0 | 4.08e-01 | 100.0% | 77.5% |
| 3t0pA01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.59 | 53.0 | 3.68e-01 | 98.2% | 70.9% |
| 3h0gH00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.59 | 50.0 | 4.01e-01 | 100.0% | 80.6% |
| 4tr6A01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.59 | 53.0 | 3.63e-01 | 98.2% | 71.7% |
| 3sreA00 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.59 | 52.0 | 3.21e-01 | 100.0% | 93.3% |
| 1zc0A00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.58 | 50.0 | 3.25e-01 | 98.2% | 28.0% |
| 2lydA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.58 | 47.0 | 3.75e-01 | 100.0% | 59.7% |
| 1dl5A02 | 3.55.20.10 | Alpha Beta › 3-Layer(bab) Sandwich › Protein-l-isoaspartate O-methyltransferase; Chain: A, domain 2 › Protein-L-isoaspartyl O-methyltransferase, C-terminal domain | 0.58 | 43.0 | 3.47e-01 | 91.1% | 39.7% |
| 2jjdF02 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.57 | 48.0 | 3.20e-01 | 98.2% | 33.2% |
| 1b77A00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.57 | 51.0 | 3.35e-01 | 98.2% | 80.7% |
| 4lxqB00 | 3.40.50.12230 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.57 | 44.0 | 2.81e-01 | 83.9% | 45.3% |
| 4ge6A00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.57 | 49.0 | 3.12e-01 | 98.2% | 29.7% |
| 4qunA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.57 | 47.0 | 3.11e-01 | 98.2% | 31.4% |
| 1wchA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.57 | 49.0 | 3.10e-01 | 98.2% | 29.5% |
| 1yguA02 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.56 | 48.0 | 3.11e-01 | 98.2% | 31.5% |
| 3h41A02 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.55 | 45.0 | 4.32e-01 | 100.0% | 76.5% |
| 2ywlA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.55 | 49.0 | 3.46e-01 | 100.0% | 58.1% |
| 2fjrA02 | 2.10.109.10 | Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A | 0.55 | 39.0 | 3.24e-01 | 100.0% | 38.9% |
| 2fp8B00 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.55 | 47.0 | 2.97e-01 | 98.2% | 100.0% |
| 3oc4A02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.54 | 48.0 | 3.75e-01 | 100.0% | 74.2% |
| 2x4jA01 | 2.30.30.600 | Mainly Beta › Roll › SH3 type barrels. › | 0.54 | 38.0 | 3.26e-01 | 98.2% | 43.1% |
| 1lfoA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.54 | 44.0 | 3.55e-01 | 100.0% | 80.3% |
| 2wmmA02 | 3.30.70.3500 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › MukB, hinge domain | 0.53 | 37.0 | 2.98e-01 | 73.2% | 63.7% |
| 4bjzA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.53 | 46.0 | 3.33e-01 | 100.0% | 40.5% |
| 2bzyA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.52 | 33.0 | 3.28e-01 | 94.6% | 58.1% |
| 2xy1A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 42.0 | 3.50e-01 | 89.3% | 95.9% |
| 3lovA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.51 | 44.0 | 3.30e-01 | 100.0% | 44.7% |
| 1kq1H00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.51 | 36.0 | 3.47e-01 | 100.0% | 66.7% |
| 1ni5A02 | 1.20.59.20 | Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › | 0.50 | 39.0 | 3.48e-01 | 91.1% | 65.1% |
| 5f1sA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 39.0 | 3.31e-01 | 89.3% | 93.1% |
| 4x9cD00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.50 | 36.0 | 3.58e-01 | 100.0% | 76.7% |
ECOD (42)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3600529 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.76 | 68.0 | 5.48e-01 | 100.0% | 94.3% |
| 3599019 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.76 | 68.0 | 5.32e-01 | 100.0% | 90.4% |
| 3281771 | 9.1.1.4 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › META | 0.75 | 67.0 | 5.35e-01 | 100.0% | 90.0% |
| 3605590 | 9.1.1.4 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › META | 0.74 | 66.0 | 5.30e-01 | 100.0% | 93.6% |
| 3948079 | 9.1.1.4 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › META | 0.73 | 65.0 | 5.05e-01 | 100.0% | 89.2% |
| 1565067 | 9.23.1.2 ↗ | beta barrels › Lipocalins/Streptavidin › Hypothetical protein BT_0869 › Hypothetical protein BT_0869 › Lipocalin_8 | 0.73 | 64.0 | 4.99e-01 | 100.0% | 95.0% |
| 3706686 | 4263.2.1.0 ↗ | a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain | 0.71 | 47.0 | 4.53e-01 | 92.9% | 60.0% |
| 3604468 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.67 | 59.0 | 5.26e-01 | 100.0% | 76.2% |
| 4307219 | 4.8.1.5 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR | 0.66 | 43.0 | 4.42e-01 | 100.0% | 69.1% |
| 2323952 | 4.29.1.1 ↗ | beta barrels › SH3 › Pyrrolysyl-tRNA synthetase tRNA binding domain › Pyrrolysyl-tRNA synthetase tRNA binding domain › PF31240 | 0.66 | 49.0 | 4.31e-01 | 100.0% | 53.5% |
| 5036420 | 12.3.1.19 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Gal_mutarotas_2 | 0.65 | 45.0 | 2.99e-01 | 73.2% | 35.0% |
| 4351809 | 4.8.1.5 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR | 0.64 | 42.0 | 4.19e-01 | 100.0% | 63.3% |
| 876 | 4237.1.1.1 ↗ | beta barrels › FomD-like › FomD-like › FomD-like › DUF402 | 0.64 | 47.0 | 3.44e-01 | 80.4% | 50.3% |
| 4174179 | 4.8.1.5 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR | 0.64 | 43.0 | 4.56e-01 | 100.0% | 80.0% |
| 3535427 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.63 | 57.0 | 3.36e-01 | 100.0% | 94.2% |
| 4970213 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.63 | 43.0 | 2.66e-01 | 71.4% | 13.4% |
| 3416102 | 5.1.4.344 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_SCAP | 0.63 | 55.0 | 3.32e-01 | 100.0% | 97.7% |
| 4981443 | 5.1.11.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed | 0.62 | 55.0 | 3.31e-01 | 100.0% | 85.8% |
| 3587590 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.61 | 40.0 | 3.25e-01 | 100.0% | 36.2% |
| None | — | 0.61 | 52.0 | 3.36e-01 | 96.4% | 96.3% | |
| 1281147 | 9.23.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › Hypothetical protein BT_0869 › Hypothetical protein BT_0869 › Lipocalin_3 | 0.60 | 49.0 | 4.35e-01 | 100.0% | 93.6% |
| 3487861 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.60 | 52.0 | 3.16e-01 | 100.0% | 95.6% |
| 4969674 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.60 | 53.0 | 3.24e-01 | 98.2% | 100.0% |
| 3265885 | 3794.1.1.0 ↗ | a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit | 0.60 | 45.0 | 3.52e-01 | 85.7% | 82.9% |
| 4527355 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.59 | 38.0 | 3.55e-01 | 100.0% | 52.2% |
| 3642082 | 5.1.4.8 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH | 0.59 | 52.0 | 3.24e-01 | 100.0% | 98.4% |
| 3176337 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.58 | 51.0 | 3.11e-01 | 100.0% | 96.8% |
| 6346 | 331.8.1.1 ↗ | a+b two layers › TBP-like › Protein-L-isoaspartyl O-methyltransferase, C-terminal domain › Protein-L-isoaspartyl O-methyltransferase, C-terminal domain › PIMT_C | 0.58 | 43.0 | 3.58e-01 | 91.1% | 44.2% |
| 3497175 | 2007.2.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase | 0.56 | 47.0 | 3.05e-01 | 98.2% | 28.1% |
| 4953054 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.56 | 38.0 | 3.51e-01 | 71.4% | 69.3% |
| 4441621 | 3943.1.1.3 ↗ | beta sandwiches › Flagellar hook-associated protein 1 beta-sandwich domains › Flagellar hook-associated protein 1 beta-sandwich domains › Flagellar hook-associated protein 1 beta-sandwich domains › flgK_1st_1 | 0.56 | 48.0 | 4.16e-01 | 100.0% | 72.2% |
| 5072132 | 331.10.2.0 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase | 0.55 | 42.0 | 3.77e-01 | 100.0% | 58.7% |
| 4385345 | 4.1.1.175 ↗ | beta barrels › SH3 › SH3 › SH3 › MSSS | 0.54 | 37.0 | 3.81e-01 | 71.4% | 90.0% |
| 5001903 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.54 | 36.0 | 3.45e-01 | 71.4% | 70.0% |
| 5010023 | 223.2.1.60 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › DUF2173 | 0.54 | 50.0 | 3.89e-01 | 100.0% | 76.4% |
| 3582026 | 5.1.10.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed | 0.53 | 42.0 | 3.73e-01 | 100.0% | 60.0% |
| 3222051 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.53 | 36.0 | 3.49e-01 | 71.4% | 81.5% |
| 5004476 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.52 | 37.0 | 3.58e-01 | 100.0% | 67.7% |
| 4447285 | 331.1.1.6 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › DUF3378 | 0.52 | 46.0 | 4.25e-01 | 98.2% | 80.0% |
| 3227180 | 207.1.1.81 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH | 0.51 | 45.0 | 2.91e-01 | 96.4% | 23.5% |
| 4003473 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.51 | 33.0 | 3.21e-01 | 94.6% | 58.5% |
| 1482194 | 4.1.1.96 ↗ | beta barrels › SH3 › SH3 › SH3 › Hfq | 0.50 | 36.0 | 3.58e-01 | 100.0% | 76.7% |