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rifoxyb1_full_scaffold_4_prodigal-single.1__X__X__00258
Bact-Virrifoxyb1_full_scaffold_4_prodigal-single.1__X__X__00258
Identity
- Kingdom:
- phage
Quality
86.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-124
Domain cluster:
rep: OP947165.1__WBC28526.1__TPMD03_52__00053__D24-135
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4rfsS00 | 1.10.1760.20 | Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › | 0.69 | 54.0 | 4.69e-01 | 82.1% | 92.5% |
| 7eu3E01 | 1.10.287.3510 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.65 | 41.0 | 4.71e-01 | 92.7% | 89.7% |
| 8e9gK01 | 1.10.287.3510 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.61 | 43.0 | 4.86e-01 | 95.1% | 96.7% |
| 4zvaA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.57 | 50.0 | 4.66e-01 | 94.3% | 78.5% |
| 1q6aA00 | 1.10.1240.30 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › KaiA/RbsU domain | 0.57 | 42.0 | 4.50e-01 | 90.2% | 88.8% |
| 1q0gA00 | 1.20.120.400 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nickel-containing superoxide dismutase | 0.57 | 42.0 | 4.36e-01 | 98.4% | 82.1% |
| 2d9dA00 | 1.20.58.120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain | 0.57 | 36.0 | 4.11e-01 | 92.7% | 87.6% |
| 3ztaA00 | 1.10.490.130 | Mainly Alpha › Orthogonal Bundle › Globin-like › | 0.56 | 50.0 | 4.84e-01 | 96.7% | 89.9% |
| 3cx3B01 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.56 | 41.0 | 3.81e-01 | 75.6% | 92.9% |
| 6lumD01 | 1.20.1300.10 | Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit | 0.55 | 43.0 | 4.32e-01 | 91.1% | 80.0% |
| 1or4B00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.54 | 47.0 | 4.36e-01 | 94.3% | 74.7% |
| 2oqcA00 | 3.60.60.10 | Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A | 0.54 | 38.0 | 2.82e-01 | 71.5% | 41.6% |
| 3eabE00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.50 | 33.0 | 3.84e-01 | 95.1% | 96.5% |
ECOD (23)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3572341 | 371.1.1.4 ↗ | few secondary structure elements › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 › PLA2G12 | 0.81 | 62.0 | 6.36e-01 | 81.3% | 81.7% |
| 4175653 | 5069.1.3.4 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › CybS | 0.70 | 46.0 | 4.75e-01 | 93.5% | 69.7% |
| 4027876 | 1198.1.1.0 ↗ | alpha bundles › BTA121 › BTA121 › BTA121 | 0.69 | 52.0 | 4.89e-01 | 77.2% | 82.8% |
| 1481950 | 604.39.1.5 ↗ | alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters › ECF_trnsprt | 0.69 | 54.0 | 4.69e-01 | 82.1% | 92.5% |
| 3967002 | 3843.1.1.27 ↗ | alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › COX4_pro | 0.69 | 43.0 | 5.12e-01 | 92.7% | 91.8% |
| 3677843 | 633.4.1.1 ↗ | alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor › PMEI | 0.65 | 45.0 | 4.14e-01 | 71.5% | 71.8% |
| 4989764 | 5065.1.1.3 ↗ | alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › BPD_transp_2 | 0.64 | 46.0 | 3.52e-01 | 73.2% | 74.9% |
| 4999330 | 604.12.1.135 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › Oxidored_q2 | 0.64 | 45.0 | 4.90e-01 | 97.6% | 89.0% |
| 869286 | 5069.1.3.4 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › CybS | 0.62 | 41.0 | 4.11e-01 | 92.7% | 65.1% |
| 3279434 | 106.1.1.11 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like › RsbRD_N | 0.62 | 55.0 | 4.88e-01 | 96.7% | 74.3% |
| 5046003 | 4070.1.1.0 ↗ | alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like | 0.60 | 46.0 | 4.01e-01 | 80.5% | 83.2% |
| 5047618 | 3843.1.1.1 ↗ | alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › Oxidored_q2 | 0.60 | 42.0 | 4.52e-01 | 94.3% | 83.8% |
| 3396815 | 60.1.2.0 ↗ | beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain | 0.60 | 37.0 | 2.48e-01 | 94.3% | 15.7% |
| 5025670 | 4070.1.1.0 ↗ | alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like | 0.59 | 45.0 | 3.97e-01 | 79.7% | 87.2% |
| 3704680 | 633.21.1.0 ↗ | alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 | 0.59 | 41.0 | 4.21e-01 | 71.5% | 99.2% |
| 4379577 | 3843.1.1.1 ↗ | alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › Oxidored_q2 | 0.59 | 42.0 | 4.41e-01 | 96.7% | 81.8% |
| 4201688 | 3843.1.1.1 ↗ | alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › Oxidored_q2 | 0.59 | 42.0 | 4.66e-01 | 95.1% | 94.7% |
| 3989507 | 7064.1.1.1 ↗ | alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › VIT1 | 0.58 | 43.0 | 4.36e-01 | 78.9% | 85.6% |
| 4311002 | 4198.1.1.2 ↗ | alpha arrays › TerB-like › TerB-like › TerB-like › ThylakoidFormat | 0.56 | 38.0 | 3.21e-01 | 72.4% | 40.5% |
| 3576991 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.56 | 42.0 | 3.77e-01 | 95.1% | 57.6% |
| 2051524 | 2007.1.14.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › ZnuA | 0.55 | 39.0 | 3.73e-01 | 74.0% | 89.9% |
| 3608296 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.54 | 37.0 | 4.00e-01 | 95.1% | 82.9% |
| 5032617 | 3843.1.1.1 ↗ | alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › Oxidored_q2 | 0.53 | 41.0 | 4.43e-01 | 97.6% | 97.1% |