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rifoxyc1_full_scaffold_3_prodigal-single.1__X__X__00008
Bact-Virrifoxyc1_full_scaffold_3_prodigal-single.1__X__X__00008
Identity
- Kingdom:
- phage
Quality
44.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 6-64
Domain cluster:
rep: rifoxyd1_full_scaffold_5_prodigal-single.1__X__X__00146__D8-91
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1yu0A02 | 2.80.20.10 | Mainly Beta › Trefoil › Tail fiber receptor-binding protein › Tail fiber receptor-binding protein | 0.65 | 45.0 | 3.39e-01 | 93.2% | 29.5% |
| 5ja1B00 | 3.90.820.10 | Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id | 0.61 | 40.0 | 3.92e-01 | 93.2% | 60.6% |
| 3ol0B00 | 6.20.90.30 | Special › Other non-globular › SH3 type barrels. › | 0.61 | 30.0 | 3.53e-01 | 71.2% | 63.4% |
| 2k2dA00 | 2.20.28.10 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.57 | 36.0 | 3.97e-01 | 74.6% | 80.9% |
| 2fg9A01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.54 | 41.0 | 3.05e-01 | 83.1% | 33.3% |
| 4xtvB02 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.53 | 38.0 | 4.12e-01 | 79.7% | 97.9% |
| 3tj8A02 | 3.30.70.790 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain | 0.52 | 42.0 | 4.04e-01 | 100.0% | 94.6% |
| 6my0A02 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 38.0 | 3.77e-01 | 79.7% | 86.2% |
| 1ltlA03 | 2.20.28.10 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.52 | 38.0 | 4.06e-01 | 79.7% | 95.9% |
| 2budA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.50 | 37.0 | 3.20e-01 | 78.0% | 63.0% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3718627 | 3945.1.1.1 ↗ | alpha superhelices › N-terminal fragment of dynein heavy chain › N-terminal fragment of dynein heavy chain › N-terminal fragment of dynein heavy chain › DHC_N1 | 0.60 | 41.0 | 2.43e-01 | 93.2% | 9.8% |
| 3724129 | 375.1.1.52 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zinc_ribbon_6 | 0.58 | 38.0 | 4.38e-01 | 83.1% | 100.0% |
| 4290243 | 375.1.1.128 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_SprT | 0.54 | 36.0 | 3.88e-01 | 79.7% | 84.0% |
| 5015298 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.53 | 35.0 | 3.75e-01 | 89.8% | 82.0% |
| 3485196 | 7056.1.1.3 ↗ | few secondary structure elements › Zinc binding domain of metalloprotease Spartan › Zinc binding domain of metalloprotease Spartan › Zinc binding domain of metalloprotease Spartan › Zn_ribbon_SprT | 0.53 | 37.0 | 3.74e-01 | 93.2% | 73.3% |
| 3507461 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.53 | 39.0 | 4.06e-01 | 88.1% | 87.3% |
| 3924844 | 304.112.1.0 ↗ | a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain | 0.53 | 40.0 | 3.12e-01 | 83.1% | 90.8% |
| 4126506 | 375.1.1.128 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_SprT | 0.52 | 36.0 | 3.89e-01 | 88.1% | 88.0% |
| 4993851 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.50 | 36.0 | 3.96e-01 | 76.3% | 100.0% |