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rifoxyc1_full_scaffold_3_prodigal-single.1__X__X__00052
Bact-Virrifoxyc1_full_scaffold_3_prodigal-single.1__X__X__00052
Identity
- Kingdom:
- phage
Quality
88.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-154
Domain cluster:
representative
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ue6D00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.54 | 29.0 | 3.37e-01 | 88.6% | 72.1% |
| 4exrA01 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.50 | 23.0 | 2.98e-01 | 91.9% | 74.1% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3622366 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.79 | 26.0 | 4.72e-01 | 92.6% | 94.0% |
| 3228242 | 4210.1.1.1 ↗ | a+b two layers › WGR domain › WGR domain › WGR domain › WGR | 0.69 | 24.0 | 2.92e-01 | 92.6% | 46.0% |
| 3284948 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.64 | 29.0 | 3.81e-01 | 75.2% | 75.3% |
| 3980078 | 274.1.1.24 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits › T2SSppdC | 0.55 | 23.0 | 3.35e-01 | 99.3% | 82.9% |
| 5018714 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.55 | 23.0 | 3.50e-01 | 99.3% | 95.0% |
| 3387200 | 7503.1.1.0 ↗ | a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain | 0.54 | 30.0 | 3.65e-01 | 96.6% | 84.2% |
| 4952879 | 2.1.1.80 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MCM_OB | 0.53 | 31.0 | 3.56e-01 | 79.2% | 77.3% |
| 4071867 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.53 | 30.0 | 3.31e-01 | 80.5% | 65.6% |
| 1555393 | 2.1.1.4 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S17 | 0.53 | 29.0 | 3.08e-01 | 92.6% | 60.0% |
| 5058787 | 2.1.1.85 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecJ_OB | 0.51 | 31.0 | 3.50e-01 | 78.5% | 80.0% |
| 3963927 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.51 | 30.0 | 3.41e-01 | 79.9% | 77.3% |
D2
medium
residues 164-260
Domain cluster:
representative
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3582148 | 3621.1.1.1 ↗ | alpha arrays › Dipeptidyl-peptidase 2 helical domain › Dipeptidyl-peptidase 2 helical domain › Dipeptidyl-peptidase 2 helical domain › Peptidase_S28 | 0.53 | 41.0 | 4.16e-01 | 84.5% | 86.9% |
| 3175785 | 109.4.1.88 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MUN | 0.51 | 39.0 | 2.41e-01 | 84.5% | 31.2% |