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rifoxyc1_full_scaffold_3_prodigal-single.1__X__X__00097
Bact-Virrifoxyc1_full_scaffold_3_prodigal-single.1__X__X__00097
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 115-179
Domain cluster:
representative
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1f32A01 | 3.30.1120.50 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › Pepsin inhibitor-3 | 0.66 | 50.0 | 5.00e-01 | 90.8% | 77.6% |
| 2r18A02 | 1.10.8.880 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Birnavirus VP3 protein, domain 2 | 0.62 | 46.0 | 4.79e-01 | 83.1% | 86.4% |
| 1f44A01 | 1.10.443.10 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core | 0.57 | 47.0 | 3.40e-01 | 93.8% | 68.0% |
| 6w6jD01 | 1.10.1780.10 | Mainly Alpha › Orthogonal Bundle › Double Clp-N motif › Clp, N-terminal domain | 0.57 | 44.0 | 3.63e-01 | 89.2% | 84.7% |
| 1glvA02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.56 | 47.0 | 3.95e-01 | 92.3% | 63.0% |
| 2it1A02 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.55 | 39.0 | 4.02e-01 | 92.3% | 77.8% |
| 3fogA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.55 | 44.0 | 3.90e-01 | 92.3% | 100.0% |
| 1f32A02 | 3.30.1120.50 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › Pepsin inhibitor-3 | 0.55 | 44.0 | 4.58e-01 | 93.8% | 100.0% |
| 1fc4A02 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.54 | 44.0 | 3.57e-01 | 93.8% | 64.0% |
| 1t9kA01 | 1.20.120.420 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 | 0.53 | 42.0 | 3.35e-01 | 89.2% | 92.1% |
| 4hasA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.53 | 40.0 | 3.60e-01 | 90.8% | 99.0% |
| 3eoiA00 | 3.30.450.360 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.51 | 35.0 | 2.89e-01 | 92.3% | 38.2% |
| 4yurA02 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.50 | 38.0 | 3.07e-01 | 87.7% | 40.0% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3386216 | 2008.1.1.101 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_4 | 0.70 | 50.0 | 3.51e-01 | 76.9% | 90.9% |
| 145103 | 2006.1.1.37 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › S6PP+Hydrolase_3 | 0.65 | 47.0 | 3.16e-01 | 76.9% | 66.3% |
| 4500040 | 833.1.1.1 ↗ | a+b duplicates or obligate multimers › Pepsin inhibitor-3 › Pepsin inhibitor-3 › Pepsin inhibitor-3 › Pepsin-I3 | 0.63 | 57.0 | 4.21e-01 | 100.0% | 59.4% |
| 4105287 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.60 | 44.0 | 4.67e-01 | 80.0% | 92.7% |
| 3573692 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.57 | 44.0 | 3.70e-01 | 87.7% | 67.2% |
| 4395669 | 2002.1.1.83 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Amidohydro_1 | 0.55 | 45.0 | 2.98e-01 | 98.5% | 93.3% |
| 4116831 | 2484.1.1.41 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › AnmK | 0.55 | 47.0 | 2.91e-01 | 92.3% | 34.8% |
| 5031052 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.54 | 38.0 | 2.72e-01 | 73.8% | 52.7% |
| 4969760 | 230.1.1.5 ↗ | a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GCHY-1 | 0.54 | 43.0 | 3.44e-01 | 87.7% | 86.9% |
| 4419527 | 2002.1.1.83 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Amidohydro_1 | 0.53 | 43.0 | 2.91e-01 | 100.0% | 98.2% |
| 3367670 | 109.4.1.2311 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF28651 | 0.53 | 39.0 | 2.82e-01 | 80.0% | 53.2% |
| 3605236 | 2004.1.1.250 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd | 0.52 | 45.0 | 2.83e-01 | 100.0% | 87.7% |
| 169160 | 274.1.1.8 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits › PilM | 0.51 | 35.0 | 2.89e-01 | 92.3% | 38.2% |
| 3369228 | 206.1.1.74 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, PK_Tyr_Ser-Thr | 0.51 | 38.0 | 2.62e-01 | 86.2% | 38.8% |
| 3974210 | 2002.1.1.83 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Amidohydro_1 | 0.51 | 41.0 | 2.62e-01 | 92.3% | 67.9% |
D2
high
residues 181-268
Domain cluster:
rep: OP296522.1__UYD72070.1__VG_p22__00022__D95-199
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00959.25 best | Phage_lysozyme | 60.3 | 3.30e-16 | 86.4% | 51.2% |
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3hdeC00 | 1.10.530.40 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.94 | 90.0 | 7.05e-01 | 100.0% | 56.1% |
| 6h9dA00 | 1.10.530.40 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.94 | 90.0 | 7.28e-01 | 100.0% | 64.9% |
| 2anvA00 | 1.10.530.40 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.91 | 87.0 | 7.13e-01 | 100.0% | 78.1% |
| 8b2sA01 | 1.10.530.40 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.91 | 86.0 | 6.92e-01 | 100.0% | 67.5% |
| 1xjuA00 | 1.10.530.40 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.90 | 85.0 | 6.83e-01 | 100.0% | 67.3% |
| 8hp8A01 | 1.10.530.40 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.85 | 79.0 | 6.45e-01 | 100.0% | 73.2% |
| 4aqnA02 | 1.10.530.40 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.81 | 76.0 | 5.73e-01 | 100.0% | 86.5% |
| 3zciA00 | 1.20.58.1660 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.65 | 45.0 | 3.52e-01 | 71.6% | 77.0% |
| 2juaA00 | 1.20.1480.30 | Mainly Alpha › Up-down Bundle › hypothetical protein mp506/mpn330, domain 1 › Designed four-helix bundle protein | 0.62 | 43.0 | 4.12e-01 | 72.7% | 84.3% |
| 5k29A00 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.58 | 42.0 | 4.08e-01 | 76.1% | 87.6% |
| 2ip6A00 | 1.20.1440.140 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.57 | 40.0 | 4.10e-01 | 75.0% | 90.8% |
| 3mpxA01 | 1.20.900.10 | Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain | 0.57 | 39.0 | 3.11e-01 | 72.7% | 74.8% |
| 1z72A00 | 1.20.910.10 | Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like | 0.56 | 42.0 | 3.28e-01 | 83.0% | 59.7% |
| 1nlxA00 | 1.20.120.320 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Group V grass pollen allergen | 0.55 | 32.0 | 3.11e-01 | 93.2% | 48.1% |
| 1xg2B00 | 1.20.140.40 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Invertase/pectin methylesterase inhibitor family protein | 0.55 | 46.0 | 3.91e-01 | 94.3% | 82.1% |
| 2qsbA00 | 1.20.1440.50 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Ta0600-like | 0.54 | 38.0 | 3.87e-01 | 73.9% | 89.4% |
| 2d2mD00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.52 | 35.0 | 3.06e-01 | 70.5% | 61.4% |
| 2z0qA01 | 1.20.900.10 | Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain | 0.51 | 35.0 | 2.85e-01 | 72.7% | 71.5% |
| 2ex3B02 | 1.20.1270.230 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › DNA terminal protein Gp3, priming domain | 0.51 | 40.0 | 4.19e-01 | 94.3% | 95.1% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 136932 | 235.1.1.6 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Phage_lysozyme | 0.94 | 90.0 | 7.02e-01 | 100.0% | 55.8% |
| 2488339 | 235.1.1.6 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Phage_lysozyme | 0.94 | 90.0 | 7.28e-01 | 100.0% | 64.9% |
| 2771202 | 235.1.1.6 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Phage_lysozyme | 0.94 | 89.0 | 7.06e-01 | 100.0% | 60.0% |
| 4834320 | 235.1.1.6 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Phage_lysozyme | 0.92 | 88.0 | 8.17e-01 | 100.0% | 94.3% |
| 3944610 | 235.1.1.6 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Phage_lysozyme | 0.92 | 86.0 | 6.90e-01 | 100.0% | 57.9% |
| 159686 | 235.1.1.6 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Phage_lysozyme | 0.91 | 87.0 | 7.13e-01 | 100.0% | 78.1% |
| 3949298 | 235.1.1.6 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Phage_lysozyme | 0.91 | 86.0 | 6.63e-01 | 100.0% | 57.1% |
| 3033455 | 235.1.1.6 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Phage_lysozyme | 0.85 | 79.0 | 6.34e-01 | 100.0% | 69.6% |
| 5050107 | 159.1.1.1 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › Hypothetical protein AF_0060 › MazG | 0.73 | 30.0 | 2.92e-01 | 97.7% | 35.8% |
| 5053481 | 633.12.1.1 ↗ | alpha bundles › Bromodomain-like › Ta0600-like › Ta0600-like › UPF0147 | 0.69 | 48.0 | 4.88e-01 | 71.6% | 100.0% |
| 4956583 | 633.12.1.1 ↗ | alpha bundles › Bromodomain-like › Ta0600-like › Ta0600-like › UPF0147 | 0.69 | 49.0 | 4.82e-01 | 73.9% | 86.2% |
| 4189563 | 633.12.1.1 ↗ | alpha bundles › Bromodomain-like › Ta0600-like › Ta0600-like › UPF0147 | 0.67 | 47.0 | 4.71e-01 | 72.7% | 88.8% |
| 4932900 | 633.12.1.1 ↗ | alpha bundles › Bromodomain-like › Ta0600-like › Ta0600-like › UPF0147 | 0.66 | 47.0 | 4.61e-01 | 73.9% | 87.1% |
| 3466334 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.66 | 46.0 | 4.03e-01 | 72.7% | 72.3% |
| 3309205 | 633.21.1.0 ↗ | alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 | 0.64 | 45.0 | 3.82e-01 | 72.7% | 80.7% |
| 3799615 | 509.1.1.2 ↗ | alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › CCM2_C | 0.63 | 44.0 | 4.29e-01 | 72.7% | 65.3% |
| 5010536 | 604.5.1.0 ↗ | alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) | 0.57 | 44.0 | 3.52e-01 | 84.1% | 81.6% |
| 3806117 | 633.4.1.1 ↗ | alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor › PMEI | 0.56 | 47.0 | 3.97e-01 | 94.3% | 81.9% |
| 1097270 | 633.19.1.1 ↗ | alpha bundles › Bromodomain-like › Hypothetical protein lpg2422 helical bundle domain › Hypothetical protein lpg2422 helical bundle domain › DUF6842 | 0.56 | 39.0 | 3.72e-01 | 73.9% | 97.2% |
| 3996096 | 109.4.1.590 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › NopRA1 | 0.55 | 46.0 | 3.47e-01 | 96.6% | 55.5% |
| 5004498 | 310.2.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF | 0.55 | 38.0 | 3.73e-01 | 72.7% | 85.0% |
| 5061335 | 102.1.1.11 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › RNA_pol_Rpb4 | 0.54 | 45.0 | 4.39e-01 | 93.2% | 86.9% |
| 3365418 | 604.5.1.0 ↗ | alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) | 0.54 | 40.0 | 3.17e-01 | 83.0% | 78.1% |
| 4931674 | 4953.1.1.40 ↗ | beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › T1RH-like_C | 0.51 | 40.0 | 4.01e-01 | 87.5% | 93.3% |
D3
medium
residues 3-86