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rifoxyc1_full_scaffold_3_prodigal-single.1__X__X__00100
Bact-Virrifoxyc1_full_scaffold_3_prodigal-single.1__X__X__00100
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 53-178_350-387_607-739_793-860
Domain cluster:
representative
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1l1lA01 | 3.20.70.20 | Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › | 0.61 | 59.0 | 5.16e-01 | 100.0% | 83.4% |
| 1xjkA00 | 3.20.70.20 | Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › | 0.59 | 57.0 | 4.65e-01 | 100.0% | 87.7% |
| 3tp9A02 | 3.40.250.10 | Alpha Beta › 3-Layer(aba) Sandwich › Oxidized Rhodanese; domain 1 › Rhodanese-like domain | 0.57 | 18.0 | 3.25e-01 | 88.2% | 88.2% |
| 2zskA02 | 3.40.50.1860 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.56 | 19.0 | 3.50e-01 | 71.8% | 100.0% |
| 3r2uA02 | 3.40.250.10 | Alpha Beta › 3-Layer(aba) Sandwich › Oxidized Rhodanese; domain 1 › Rhodanese-like domain | 0.55 | 15.0 | 3.13e-01 | 74.8% | 97.6% |
| 7wgrA03 | 3.40.50.11610 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal domain | 0.54 | 19.0 | 3.11e-01 | 91.8% | 84.0% |
| 4tyzA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.53 | 16.0 | 2.92e-01 | 87.9% | 84.4% |
| 2ic2A00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 16.0 | 3.03e-01 | 77.0% | 93.3% |
| 1r5bA03 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.51 | 17.0 | 2.97e-01 | 80.8% | 90.0% |
| 2gerA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.50 | 23.0 | 3.32e-01 | 96.4% | 90.1% |
| 5uh0A02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.50 | 16.0 | 2.98e-01 | 81.1% | 100.0% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4016300 | 1.1.8.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP_EFTU_D3 | 0.58 | 17.0 | 3.30e-01 | 80.5% | 93.7% |
| 4067125 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.54 | 51.0 | 4.45e-01 | 96.4% | 99.8% |
| 4950960 | 327.3.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › GMP synthetase C-terminal dimerisation domain › GMP synthetase C-terminal dimerisation domain | 0.54 | 13.0 | 2.99e-01 | 76.2% | 100.0% |
| 5044581 | 2007.2.5.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Rhodanese/Cell cycle control phosphatase › Rhodanese | 0.54 | 17.0 | 3.19e-01 | 80.5% | 94.3% |
| 4117853 | 7502.1.1.0 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS | 0.54 | 12.0 | 2.83e-01 | 81.9% | 100.0% |
| 5007070 | 327.5.1.3 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › AMP-binding_C_2 | 0.54 | 13.0 | 2.86e-01 | 71.8% | 89.2% |
| 3450580 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.52 | 21.0 | 3.42e-01 | 98.9% | 99.3% |
| 4127852 | 2007.1.10.5 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › PrpR receptor domain-like › PF27163 | 0.51 | 14.0 | 2.88e-01 | 89.9% | 98.8% |
| 4033197 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 13.0 | 2.76e-01 | 80.3% | 93.8% |
D2
high
residues 393-535_547-564
Domain cluster:
rep: OQ999401.1__WJZ48428.1__X__00012__D126-338
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF21995.2 best | RNR-II_ins_dom | 33.7 | 5.00e-08 | 54.0% | 69.2% |
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2g8lB01 | 1.10.8.380 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein PF01937, DUF89, domain 1 | 0.67 | 27.0 | 4.10e-01 | 88.2% | 89.6% |
| 2wghA00 | 3.20.70.20 | Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › | 0.61 | 40.0 | 2.61e-01 | 73.9% | 16.8% |
| 2f2cA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.58 | 32.0 | 3.75e-01 | 96.9% | 77.1% |
| 4gycA00 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.56 | 46.0 | 4.17e-01 | 87.6% | 94.1% |
| 3h4cA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.54 | 31.0 | 3.81e-01 | 98.1% | 90.6% |
| 1c9bA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.53 | 29.0 | 3.60e-01 | 96.9% | 87.6% |
| 1gcbA01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.51 | 38.0 | 2.85e-01 | 80.1% | 31.2% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4208725 | 2500.1.1.0 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel | 0.87 | 83.0 | 5.55e-01 | 100.0% | 31.2% |
| 5051775 | 2500.1.1.9 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › RNR-II_ins_dom | 0.86 | 82.0 | 5.52e-01 | 100.0% | 32.2% |
| 5074120 | 601.28.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › VPS28 C-terminal domain-like › VPS28 C-terminal domain-like | 0.62 | 33.0 | 4.21e-01 | 83.9% | 86.3% |
| 4941277 | 103.2.1.2 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone | 0.58 | 29.0 | 3.88e-01 | 100.0% | 92.5% |
| 4985470 | 4009.1.1.0 ↗ | alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins | 0.57 | 26.0 | 3.83e-01 | 70.8% | 98.6% |
| 3833444 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.51 | 29.0 | 3.25e-01 | 96.9% | 70.0% |
| 3477955 | 604.5.1.31 ↗ | alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › TRAM_LAG1_CLN8 | 0.51 | 36.0 | 3.17e-01 | 72.0% | 78.8% |
D3
high
residues 742-789_870-915
Domain cluster:
rep: IMGVR_UViG_3300025676_000217-3300025676-Ga0209657_100276218__D155-205_285-306
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1l1lA03 | 3.90.1390.10 | Alpha Beta › Alpha-Beta Complex › b-12 dependent (class ii) ribonucleotide reductase, chain A, domain 3 › b-12 dependent (class ii) ribonucleotide reductase, chain A, domain 3 | 0.82 | 66.0 | 6.62e-01 | 84.0% | 97.9% |
| 2uv8A06 | 3.30.70.2490 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.64 | 33.0 | 3.83e-01 | 70.2% | 68.7% |
| 4l3tA03 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.54 | 38.0 | 2.90e-01 | 74.5% | 66.8% |
| 1fxrA00 | 3.30.70.20 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 32.0 | 3.70e-01 | 87.2% | 90.6% |
| 1vjwA00 | 3.30.70.20 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 31.0 | 3.63e-01 | 86.2% | 93.2% |
| 2xzmI00 | 3.30.230.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.52 | 35.0 | 3.09e-01 | 70.2% | 76.9% |
| 2f1fA02 | 3.30.70.1150 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 | 0.51 | 35.0 | 3.77e-01 | 98.9% | 85.9% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4208725 | 2500.1.1.0 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel | 0.88 | 65.0 | 3.97e-01 | 76.6% | 28.4% |
| 3275621 | 2500.1.1.0 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel | 0.85 | 62.0 | 3.86e-01 | 75.5% | 32.0% |
| 4087732 | 2500.1.1.0 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel | 0.84 | 67.0 | 4.08e-01 | 83.0% | 31.5% |
| 3282905 | 4085.2.1.1 ↗ | alpha arrays › RbcX-like › uncharacterized protein LPG2149 › uncharacterized protein LPG2149 › Helicase_C_3 | 0.57 | 38.0 | 4.03e-01 | 80.9% | 76.5% |
| 4957962 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.56 | 40.0 | 3.63e-01 | 74.5% | 77.7% |
| 5053648 | 304.4.1.1 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › AsnC_trans_reg | 0.54 | 38.0 | 3.82e-01 | 74.5% | 94.0% |
| 3387917 | 304.8.1.7 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ALS_ss_C | 0.53 | 36.0 | 4.06e-01 | 98.9% | 92.9% |
| 4292464 | 327.19.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › DNA mismatch repair protein MutL regulatory subdomain › DNA mismatch repair protein MutL regulatory subdomain › MutL_C | 0.51 | 36.0 | 3.84e-01 | 76.6% | 85.0% |
| 4964402 | 3501.1.1.0 ↗ | a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 | 0.51 | 36.0 | 4.06e-01 | 79.8% | 100.0% |
| 3324140 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.51 | 40.0 | 4.00e-01 | 87.2% | 98.0% |
| 5019566 | 304.24.1.2 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › DUF1949 | 0.50 | 35.0 | 3.74e-01 | 97.9% | 86.3% |
| 4299576 | 304.8.1.7 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ALS_ss_C | 0.50 | 35.0 | 3.67e-01 | 98.9% | 80.7% |
| 4012905 | 320.1.1.0 ↗ | a+b two layers › R3H domain-like › R3H domain › R3H domain | 0.50 | 34.0 | 3.61e-01 | 74.5% | 78.8% |
D4
medium
residues 1-52
Domain cluster:
representative
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1l1lA01 | 3.20.70.20 | Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › | 0.77 | 69.0 | 3.92e-01 | 100.0% | 11.9% |
| 5bu6A00 | 3.20.20.370 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycoside hydrolase/deacetylase | 0.72 | 50.0 | 3.15e-01 | 73.1% | 27.3% |
| 6gnaA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.67 | 44.0 | 2.99e-01 | 84.6% | 19.8% |
| 1c4zA01 | 3.90.1750.10 | Alpha Beta › Alpha-Beta Complex › Hect, E3 ligase catalytic domain fold › Hect, E3 ligase catalytic domains | 0.61 | 42.0 | 3.06e-01 | 73.1% | 68.8% |
| 2l2oA00 | 1.10.10.1540 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Costar domain | 0.60 | 42.0 | 3.61e-01 | 75.0% | 84.7% |
| 3gpvA00 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.59 | 42.0 | 3.23e-01 | 75.0% | 77.9% |
| 2qenA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 41.0 | 3.77e-01 | 100.0% | 55.7% |
| 5y6iA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 44.0 | 3.99e-01 | 82.7% | 58.9% |
| 2yzsA02 | 1.20.120.920 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain | 0.57 | 46.0 | 3.03e-01 | 90.4% | 51.8% |
| 2zhgA00 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.57 | 41.0 | 3.21e-01 | 78.8% | 73.6% |
| 3qaoA00 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.56 | 42.0 | 3.14e-01 | 80.8% | 60.0% |
| 5i41B00 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.56 | 40.0 | 3.67e-01 | 75.0% | 95.5% |
| 5d8cA00 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.55 | 41.0 | 3.12e-01 | 80.8% | 77.0% |
| 4oo2A02 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.54 | 38.0 | 2.66e-01 | 78.8% | 21.8% |
| 5ttjA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.54 | 42.0 | 2.86e-01 | 90.4% | 81.0% |
| 1c0wA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 38.0 | 3.37e-01 | 78.8% | 53.4% |
| 1on2A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 38.0 | 3.43e-01 | 100.0% | 55.6% |
| 5ygqA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.53 | 41.0 | 2.84e-01 | 92.3% | 67.1% |
| 2wteA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 39.0 | 3.53e-01 | 100.0% | 58.3% |
| 1t3aA00 | 3.90.1240.10 | Alpha Beta › Alpha-Beta Complex › Zincin-like › "Metalloproteases (""zincins""), catalytic domain like" | 0.52 | 41.0 | 2.55e-01 | 100.0% | 36.3% |
| 3mcwA00 | 3.40.50.850 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Isochorismatase-like | 0.52 | 37.0 | 2.61e-01 | 80.8% | 79.0% |
| 5ar1A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 38.0 | 2.55e-01 | 80.8% | 96.3% |
| 1jeyB03 | 1.10.1600.10 | Mainly Alpha › Orthogonal Bundle › Ku70; Chain: A; domain 4 › | 0.51 | 40.0 | 3.26e-01 | 98.1% | 45.1% |
| 4i3gA04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 35.0 | 2.71e-01 | 71.2% | 76.3% |
| 3vusB00 | 3.20.20.370 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycoside hydrolase/deacetylase | 0.51 | 45.0 | 2.84e-01 | 100.0% | 83.2% |
| 1stzA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 41.0 | 3.54e-01 | 100.0% | 57.6% |
ECOD (40)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4030472 | 316.1.1.36 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › MTPAP-like_central | 0.72 | 39.0 | 2.60e-01 | 73.1% | 14.2% |
| 1511065 | 101.1.2.6 ↗ | alpha arrays › HTH › HTH › winged helix domain › GntR | 0.66 | 40.0 | 3.14e-01 | 71.2% | 28.7% |
| 3641227 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.63 | 38.0 | 3.43e-01 | 71.2% | 41.3% |
| 4951637 | 101.1.15.0 ↗ | alpha arrays › HTH › HTH › HAT1, C-terminal domain | 0.62 | 43.0 | 3.17e-01 | 73.1% | 86.4% |
| 3885052 | 145.1.1.4 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain › ASXH | 0.61 | 39.0 | 3.24e-01 | 100.0% | 35.8% |
| 3805561 | 101.1.1.121 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 | 0.59 | 42.0 | 3.20e-01 | 75.0% | 32.0% |
| 3932354 | 7023.1.1.1 ↗ | alpha bundles › helical ridge domain of D-alanyl transfer protein › helical ridge domain of D-alanyl transfer protein › helical ridge domain of D-alanyl transfer protein › MBOAT | 0.59 | 44.0 | 3.26e-01 | 82.7% | 68.6% |
| 360918 | 101.1.9.17 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 | 0.58 | 41.0 | 3.20e-01 | 75.0% | 76.9% |
| 3959671 | 149.1.1.0 ↗ | alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 | 0.58 | 41.0 | 2.55e-01 | 75.0% | 16.3% |
| 3281871 | 101.1.9.17 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 | 0.58 | 42.0 | 3.25e-01 | 78.8% | 62.5% |
| 2665492 | 101.1.9.17 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 | 0.58 | 44.0 | 3.27e-01 | 84.6% | 61.2% |
| 3600493 | 3758.1.1.0 ↗ | alpha bundles › Bacterial hemolysins-like › Bacterial hemolysins › Bacterial hemolysins | 0.57 | 39.0 | 2.42e-01 | 71.2% | 21.7% |
| 5041445 | 101.1.9.17 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 | 0.57 | 41.0 | 3.40e-01 | 75.0% | 68.9% |
| 5079289 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 45.0 | 3.63e-01 | 90.4% | 49.5% |
| 3519854 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.56 | 48.0 | 2.87e-01 | 100.0% | 17.0% |
| 5049796 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 38.0 | 3.76e-01 | 78.8% | 67.3% |
| 3285380 | 101.1.9.82 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 | 0.56 | 44.0 | 3.39e-01 | 88.5% | 67.2% |
| 4998317 | 2004.1.1.73 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 | 0.55 | 45.0 | 2.93e-01 | 94.2% | 20.0% |
| 3176105 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.55 | 40.0 | 2.64e-01 | 84.6% | 82.1% |
| 3387245 | 101.1.9.17 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 | 0.55 | 41.0 | 3.04e-01 | 80.8% | 72.6% |
| 4031948 | 101.1.9.82 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 | 0.55 | 43.0 | 3.40e-01 | 88.5% | 70.4% |
| 3204763 | 4967.1.1.0 ↗ | alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases | 0.55 | 44.0 | 2.91e-01 | 98.1% | 21.2% |
| 5057564 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.54 | 42.0 | 2.97e-01 | 84.6% | 53.8% |
| 4420911 | 101.1.9.17 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 | 0.54 | 40.0 | 3.02e-01 | 82.7% | 49.6% |
| 3284505 | 101.1.9.36 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR | 0.53 | 42.0 | 3.35e-01 | 90.4% | 72.2% |
| 3976015 | 101.1.9.17 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 | 0.53 | 39.0 | 3.42e-01 | 78.8% | 88.7% |
| 4013939 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 40.0 | 2.89e-01 | 84.6% | 81.2% |
| 3371657 | 101.1.2.386 ↗ | alpha arrays › HTH › HTH › winged helix domain › WH_DRP | 0.52 | 43.0 | 3.70e-01 | 98.1% | 61.1% |
| 4649506 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.52 | 42.0 | 2.68e-01 | 98.1% | 30.8% |
| 4014086 | 109.4.1.777 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.52 | 44.0 | 2.76e-01 | 100.0% | 26.9% |
| 3597816 | 5069.1.1.4 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Ferric_reduct | 0.52 | 44.0 | 2.80e-01 | 100.0% | 49.0% |
| 3770678 | 386.1.1.143 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › Znf_XAF1_N | 0.52 | 33.0 | 3.28e-01 | 73.1% | 60.0% |
| 4527101 | 101.1.2.31 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha | 0.52 | 39.0 | 2.86e-01 | 86.5% | 96.9% |
| 3394655 | 603.1.1.104 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › 7tm_7 | 0.51 | 44.0 | 2.72e-01 | 100.0% | 70.0% |
| 3816427 | 101.1.2.386 ↗ | alpha arrays › HTH › HTH › winged helix domain › WH_DRP | 0.51 | 42.0 | 3.43e-01 | 96.2% | 53.3% |
| 3587879 | 101.1.9.36 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR | 0.51 | 40.0 | 3.20e-01 | 88.5% | 74.5% |
| 4616960 | 321.1.1.7 ↗ | a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › GCS2 | 0.51 | 42.0 | 2.62e-01 | 100.0% | 44.8% |
| 3268630 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 38.0 | 3.18e-01 | 94.2% | 45.3% |
| 3428027 | 101.1.2.386 ↗ | alpha arrays › HTH › HTH › winged helix domain › WH_DRP | 0.51 | 43.0 | 3.28e-01 | 100.0% | 43.7% |
| 5031515 | 101.1.2.927 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF7347 | 0.50 | 42.0 | 3.52e-01 | 98.1% | 54.7% |
D5
medium
residues 188-245_263-280
Domain cluster:
representative
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4yhxA01 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.58 | 47.0 | 3.92e-01 | 90.8% | 66.7% |
| 3na2A00 | 3.40.1570.20 | Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › | 0.57 | 41.0 | 3.43e-01 | 76.3% | 97.8% |
| 7npaA02 | 3.30.70.3340 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 38.0 | 3.72e-01 | 71.1% | 63.5% |
| 2f1fA02 | 3.30.70.1150 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 | 0.55 | 38.0 | 3.80e-01 | 72.4% | 70.5% |
| 2jhjA02 | 1.10.340.30 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 | 0.55 | 40.0 | 3.46e-01 | 100.0% | 49.2% |
| 3iieB03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.54 | 42.0 | 4.08e-01 | 98.7% | 74.1% |
| 4hudA01 | 3.30.2000.40 | Alpha Beta › 2-Layer Sandwich › STM4215-like › Myoviridae tail sheath stabiliser | 0.54 | 42.0 | 3.13e-01 | 85.5% | 92.4% |
| 3io1A01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.54 | 37.0 | 2.58e-01 | 72.4% | 71.9% |
| 2kloA00 | 1.10.10.1420 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DNA replication factor Cdt1, C-terminal WH domain | 0.53 | 38.0 | 3.19e-01 | 76.3% | 50.0% |
| 5trdA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 39.0 | 3.86e-01 | 81.6% | 94.0% |
| 1s12A00 | 3.30.70.1490 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp | 0.52 | 37.0 | 3.49e-01 | 75.0% | 78.7% |
| 4hhrA01 | 1.10.640.10 | Mainly Alpha › Orthogonal Bundle › Myeloperoxidase, subunit C › Haem peroxidase domain superfamily, animal type | 0.52 | 40.0 | 2.43e-01 | 86.8% | 76.5% |
| 4by6D02 | 1.25.40.800 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.51 | 37.0 | 2.69e-01 | 76.3% | 58.7% |
| 3m8eA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 40.0 | 3.72e-01 | 90.8% | 89.1% |
| 1pjqA02 | 3.30.160.110 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Sirohaem synthase, central domain | 0.50 | 25.0 | 3.38e-01 | 100.0% | 100.0% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3603433 | 242.4.1.2 ↗ | a+b two layers › Homing endonucleases-like › DNA polymerase II large subunit DP2 central a+b domain › DNA polymerase II large subunit DP2 central a+b domain › PolC_DP2_central | 0.60 | 47.0 | 4.09e-01 | 86.8% | 86.7% |
| 3584418 | 109.4.1.390 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TH1 | 0.59 | 40.0 | 2.76e-01 | 72.4% | 22.0% |
| 3519797 | 5001.1.1.7 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Frizzled | 0.55 | 40.0 | 2.62e-01 | 76.3% | 32.4% |
| 3520483 | 5054.1.1.58 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › YVC1_C | 0.54 | 39.0 | 2.49e-01 | 76.3% | 27.6% |
| 4236657 | 633.21.1.18 ↗ | alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 › CASP_dom | 0.54 | 39.0 | 3.11e-01 | 76.3% | 69.0% |
| 3643228 | 633.21.1.18 ↗ | alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 › CASP_dom | 0.54 | 39.0 | 3.07e-01 | 76.3% | 67.1% |
| 3719555 | 109.4.1.761 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Telomere_reg-2 | 0.54 | 38.0 | 2.35e-01 | 76.3% | 17.7% |
| 4015035 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.54 | 39.0 | 2.58e-01 | 76.3% | 73.0% |
| 4973641 | 102.1.2.1 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD | 0.54 | 39.0 | 2.86e-01 | 100.0% | 28.1% |
| 4944802 | 2008.1.1.15 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › HSDR_N | 0.53 | 37.0 | 2.65e-01 | 75.0% | 82.6% |
| 3980132 | 823.1.1.1 ↗ | a+b two layers › Head-to-tail joining protein W, gpW › Head-to-tail joining protein W, gpW › Head-to-tail joining protein W, gpW › gpW | 0.53 | 28.0 | 3.28e-01 | 100.0% | 72.7% |
| 4441063 | 102.1.2.1 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD | 0.52 | 38.0 | 2.76e-01 | 100.0% | 27.1% |
| 4988512 | 101.1.2.14 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_5 | 0.52 | 40.0 | 3.14e-01 | 85.5% | 50.0% |
| 4022896 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 35.0 | 2.75e-01 | 71.1% | 71.3% |
| 3936356 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.51 | 37.0 | 2.13e-01 | 76.3% | 14.3% |
| 5057738 | 312.1.1.0 ↗ | a+b three layers › HIT-like › HIT-related › HIT-related | 0.51 | 35.0 | 2.78e-01 | 72.4% | 81.8% |
| 3717172 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.50 | 36.0 | 2.06e-01 | 76.3% | 15.3% |
D6
medium
residues 246-262_281-345
Domain cluster:
representative
CATH (53)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3q87B00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.71 | 50.0 | 3.93e-01 | 73.2% | 84.8% |
| 1jsxA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.69 | 49.0 | 3.67e-01 | 74.4% | 71.0% |
| 4wsqB00 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.67 | 49.0 | 3.25e-01 | 76.8% | 22.9% |
| 3mwbB03 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.66 | 46.0 | 4.44e-01 | 73.2% | 100.0% |
| 2dchX01 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.65 | 50.0 | 4.77e-01 | 80.5% | 80.6% |
| 7dl8C01 | 3.30.110.20 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain | 0.65 | 52.0 | 5.10e-01 | 85.4% | 82.0% |
| 1i6uA01 | 3.30.1370.30 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › | 0.63 | 42.0 | 4.53e-01 | 76.8% | 83.8% |
| 3qwuA03 | 3.30.70.2160 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.63 | 44.0 | 3.73e-01 | 73.2% | 84.2% |
| 5mmjh01 | 3.30.1370.30 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › | 0.62 | 44.0 | 4.57e-01 | 84.1% | 81.3% |
| 3hyiA01 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.61 | 53.0 | 4.10e-01 | 98.8% | 59.7% |
| 3rrkA03 | 3.30.70.2750 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.61 | 39.0 | 4.07e-01 | 72.0% | 71.6% |
| 6ue9L02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.61 | 44.0 | 3.88e-01 | 76.8% | 57.4% |
| 3b5iB01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.60 | 52.0 | 3.77e-01 | 97.6% | 69.8% |
| 4p6qA02 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.60 | 37.0 | 3.84e-01 | 72.0% | 65.8% |
| 1blxA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.60 | 43.0 | 4.22e-01 | 76.8% | 83.7% |
| 3f62A00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.60 | 45.0 | 4.06e-01 | 78.0% | 65.7% |
| 2onlC01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.60 | 44.0 | 4.33e-01 | 76.8% | 75.6% |
| 4ci2B02 | 2.30.130.40 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like | 0.60 | 44.0 | 3.84e-01 | 78.0% | 64.8% |
| 2efjA02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.59 | 53.0 | 3.90e-01 | 98.8% | 66.8% |
| 1r89A03 | 3.30.70.590 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Poly(A) polymerase predicted RNA binding domain | 0.59 | 41.0 | 3.45e-01 | 70.7% | 49.3% |
| 2x7gA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.59 | 42.0 | 4.17e-01 | 76.8% | 72.7% |
| 2f06A00 | 3.30.2130.10 | Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like | 0.58 | 40.0 | 3.38e-01 | 72.0% | 100.0% |
| 2qrrA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.58 | 40.0 | 3.86e-01 | 72.0% | 63.9% |
| 4qdjA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.58 | 50.0 | 3.70e-01 | 93.9% | 98.1% |
| 1mruA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.57 | 41.0 | 4.01e-01 | 76.8% | 78.3% |
| 3gnlA01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.57 | 52.0 | 4.06e-01 | 98.8% | 68.5% |
| 3g2fA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.57 | 41.0 | 4.07e-01 | 76.8% | 78.2% |
| 1jj2L00 | 3.40.1120.10 | Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal protein L15e › Ribosomal protein L15 | 0.57 | 44.0 | 3.37e-01 | 84.1% | 59.8% |
| 4m3sA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.57 | 49.0 | 3.98e-01 | 97.6% | 94.3% |
| 2vzyC00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.56 | 49.0 | 3.80e-01 | 98.8% | 76.7% |
| 2h00B00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.56 | 49.0 | 3.65e-01 | 97.6% | 44.8% |
| 3tm4A02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.56 | 50.0 | 3.89e-01 | 98.8% | 65.1% |
| 3c1mA02 | 3.30.2130.10 | Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like | 0.55 | 43.0 | 3.49e-01 | 85.4% | 89.0% |
| 3pgvA02 | 3.30.1240.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › | 0.55 | 43.0 | 4.03e-01 | 85.4% | 84.2% |
| 4kvxA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.54 | 46.0 | 3.86e-01 | 98.8% | 96.1% |
| 5i2cB01 | 3.30.2130.10 | Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like | 0.54 | 40.0 | 3.31e-01 | 78.0% | 82.9% |
| 3lpxB02 | 3.30.1360.40 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.54 | 42.0 | 4.03e-01 | 90.2% | 73.4% |
| 2fiaB00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.54 | 46.0 | 3.83e-01 | 98.8% | 93.7% |
| 1tiqB00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.54 | 46.0 | 3.75e-01 | 98.8% | 91.1% |
| 3merA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.54 | 48.0 | 3.78e-01 | 100.0% | 74.6% |
| 4e2aA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.53 | 46.0 | 3.67e-01 | 98.8% | 92.9% |
| 1x19A02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.53 | 46.0 | 3.74e-01 | 97.6% | 70.0% |
| 2x7bA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.53 | 44.0 | 3.67e-01 | 96.3% | 95.5% |
| 2cy2A00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.53 | 45.0 | 3.60e-01 | 97.6% | 92.5% |
| 3fncB00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.53 | 44.0 | 3.69e-01 | 98.8% | 93.8% |
| 3blnA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.53 | 46.0 | 3.87e-01 | 98.8% | 93.7% |
| 2fiwA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.53 | 45.0 | 3.70e-01 | 98.8% | 91.3% |
| 2l2oA00 | 1.10.10.1540 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Costar domain | 0.51 | 38.0 | 3.86e-01 | 82.9% | 92.9% |
| 1u6mA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.51 | 43.0 | 3.40e-01 | 97.6% | 96.3% |
| 1q2yA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.51 | 43.0 | 3.70e-01 | 97.6% | 95.0% |
| 5mmiU01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.51 | 38.0 | 3.85e-01 | 84.1% | 82.9% |
| 4za1C00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 35.0 | 3.39e-01 | 72.0% | 67.4% |
| 2qswA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.50 | 34.0 | 3.38e-01 | 72.0% | 68.9% |
ECOD (67)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3364258 | 304.8.1.45 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant | 0.75 | 53.0 | 5.21e-01 | 78.0% | 68.2% |
| 3372798 | 304.8.1.45 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant | 0.74 | 52.0 | 5.16e-01 | 78.0% | 69.4% |
| 3655967 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.74 | 51.0 | 4.84e-01 | 76.8% | 61.1% |
| 3643150 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.74 | 52.0 | 5.17e-01 | 79.3% | 70.6% |
| 4194681 | 2003.1.5.40 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › TrmK | 0.73 | 53.0 | 4.23e-01 | 75.6% | 92.9% |
| 3817212 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.73 | 48.0 | 5.13e-01 | 73.2% | 78.6% |
| 3684532 | 304.8.1.45 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant | 0.72 | 49.0 | 5.02e-01 | 78.0% | 72.5% |
| 3382396 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.72 | 51.0 | 5.05e-01 | 76.8% | 70.6% |
| 3660837 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.72 | 51.0 | 5.10e-01 | 78.0% | 71.8% |
| 3970036 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.72 | 51.0 | 3.41e-01 | 74.4% | 63.2% |
| None | — | 0.71 | 52.0 | 4.15e-01 | 75.6% | 92.9% | |
| 4202913 | 2003.1.5.54 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_10 | 0.71 | 52.0 | 3.46e-01 | 76.8% | 61.8% |
| 4376479 | 2003.1.5.25 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GidB | 0.71 | 48.0 | 3.69e-01 | 70.7% | 74.1% |
| 4653568 | 2003.1.5.79 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_23 | 0.69 | 49.0 | 3.69e-01 | 74.4% | 79.0% |
| None | — | 0.69 | 50.0 | 3.49e-01 | 76.8% | 68.4% | |
| 3817811 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.69 | 48.0 | 4.77e-01 | 78.0% | 69.4% |
| 3365684 | 306.6.1.0 ↗ | a+b two layers › Glucose permease domain IIB-like › PH0987 N-terminal domain-like › PH0987 N-terminal domain-like | 0.69 | 52.0 | 4.90e-01 | 87.8% | 66.0% |
| 3384789 | 304.8.1.45 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant | 0.68 | 49.0 | 4.47e-01 | 78.0% | 56.4% |
| 3816023 | 304.8.1.45 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant | 0.68 | 47.0 | 4.77e-01 | 78.0% | 72.5% |
| 3807253 | 304.8.1.45 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant | 0.68 | 48.0 | 4.86e-01 | 78.0% | 75.0% |
| 3333863 | 304.8.1.47 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_ACR9_3rd | 0.68 | 46.0 | 4.14e-01 | 74.4% | 51.8% |
| 3675774 | 304.8.1.45 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant | 0.68 | 47.0 | 4.71e-01 | 78.0% | 70.6% |
| 3456962 | 304.8.1.45 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant | 0.67 | 47.0 | 4.69e-01 | 78.0% | 71.4% |
| 3825541 | 304.8.1.45 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant | 0.67 | 49.0 | 4.50e-01 | 78.0% | 61.8% |
| 4341311 | 304.8.1.45 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant | 0.67 | 45.0 | 4.37e-01 | 72.0% | 63.3% |
| 4300927 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.66 | 48.0 | 4.31e-01 | 79.3% | 54.8% |
| 172962 | 242.1.1.5 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › WhiA_N | 0.66 | 53.0 | 4.83e-01 | 85.4% | 75.5% |
| 3810458 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.66 | 47.0 | 4.47e-01 | 79.3% | 64.2% |
| 3791595 | 320.1.1.0 ↗ | a+b two layers › R3H domain-like › R3H domain › R3H domain | 0.66 | 52.0 | 4.84e-01 | 86.6% | 89.5% |
| 3824912 | 304.8.1.45 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant | 0.65 | 45.0 | 4.58e-01 | 76.8% | 73.8% |
| 3317802 | 304.8.1.45 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant | 0.65 | 48.0 | 4.55e-01 | 78.0% | 66.3% |
| 4292806 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.65 | 46.0 | 4.27e-01 | 78.0% | 58.1% |
| 3329478 | 304.8.1.2 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT | 0.65 | 46.0 | 4.08e-01 | 76.8% | 50.8% |
| 4180139 | 304.8.1.8 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_4 | 0.65 | 45.0 | 4.47e-01 | 72.0% | 70.6% |
| 3369895 | 304.12.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 | 0.65 | 51.0 | 4.88e-01 | 86.6% | 72.6% |
| 3659065 | 304.8.1.45 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant | 0.65 | 48.0 | 4.50e-01 | 78.0% | 67.0% |
| 4473190 | 304.8.1.53 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › GlnD_5th | 0.65 | 46.0 | 3.66e-01 | 78.0% | 35.4% |
| 4043221 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.63 | 46.0 | 4.26e-01 | 79.3% | 58.2% |
| 3959682 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.63 | 47.0 | 4.87e-01 | 84.1% | 85.3% |
| 3970545 | 310.3.1.2 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › T2SSM | 0.63 | 46.0 | 4.72e-01 | 84.1% | 82.3% |
| 3321864 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.62 | 44.0 | 4.07e-01 | 76.8% | 56.4% |
| 3642333 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.62 | 53.0 | 4.12e-01 | 92.7% | 96.0% |
| 3329883 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.62 | 46.0 | 4.19e-01 | 79.3% | 68.2% |
| 3378122 | 304.8.1.2 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT | 0.62 | 41.0 | 3.55e-01 | 70.7% | 43.8% |
| 3165990 | 310.3.1.22 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › PF27480, PF30181 | 0.61 | 53.0 | 4.79e-01 | 97.6% | 97.4% |
| 5072976 | 2003.1.5.81 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 | 0.61 | 53.0 | 3.94e-01 | 93.9% | 100.0% |
| 3367924 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.61 | 43.0 | 3.87e-01 | 75.6% | 54.2% |
| 4994637 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.60 | 40.0 | 3.83e-01 | 72.0% | 57.0% |
| 3306024 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.59 | 46.0 | 4.21e-01 | 96.3% | 63.6% |
| 5073032 | 2003.1.5.42 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_21 | 0.59 | 53.0 | 3.69e-01 | 98.8% | 50.6% |
| 3611756 | 2003.1.5.81 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 | 0.57 | 52.0 | 3.97e-01 | 98.8% | 69.9% |
| 5065348 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.57 | 50.0 | 3.99e-01 | 98.8% | 88.2% |
| 3173528 | 331.10.1.1 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › S-adenosylmethionine decarboxylase › SAM_decarbox | 0.57 | 49.0 | 3.26e-01 | 97.6% | 86.5% |
| 3688701 | 213.1.1.25 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_3 | 0.57 | 49.0 | 3.71e-01 | 97.6% | 85.3% |
| None | — | 0.57 | 51.0 | 3.44e-01 | 100.0% | 53.5% | |
| 3807768 | 2003.1.5.115 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_29 | 0.57 | 48.0 | 3.41e-01 | 97.6% | 91.3% |
| 3280916 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.56 | 48.0 | 3.94e-01 | 98.8% | 93.8% |
| 4619396 | 2003.1.5.25 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GidB | 0.55 | 50.0 | 3.55e-01 | 98.8% | 48.1% |
| None | — | 0.55 | 49.0 | 3.47e-01 | 100.0% | 57.7% | |
| 5072291 | 213.1.1.27 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_7 | 0.55 | 47.0 | 3.80e-01 | 98.8% | 95.3% |
| 4441321 | 2003.1.5.25 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GidB | 0.55 | 49.0 | 3.52e-01 | 98.8% | 48.9% |
| 4951898 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.54 | 46.0 | 3.84e-01 | 100.0% | 94.2% |
| 4290185 | 2003.1.5.25 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GidB | 0.53 | 48.0 | 3.57e-01 | 98.8% | 55.9% |
| 3944435 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.53 | 42.0 | 4.37e-01 | 87.8% | 97.3% |
| 356728 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.53 | 44.0 | 3.69e-01 | 98.8% | 93.8% |
| 4629452 | 2003.1.5.25 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GidB | 0.52 | 45.0 | 3.31e-01 | 97.6% | 77.8% |
| 3743804 | 2003.1.5.36 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Gcd10p | 0.51 | 44.0 | 3.22e-01 | 100.0% | 67.1% |