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rifoxyc1_full_scaffold_3_prodigal-single.1__X__X__00142
Bact-Virrifoxyc1_full_scaffold_3_prodigal-single.1__X__X__00142
Identity
- Kingdom:
- phage
Quality
88.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 55-270
Domain cluster:
rep: IMGVR_UViG_3300045988_178991-3300045988-Ga0495776_136811_32760_33425__D7-219
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF08885.18 best | GSCFA | 120.0 | 2.00e-34 | 94.9% | 82.3% |
CATH (42)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1bwpA00 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.79 | 50.0 | 5.05e-01 | 95.8% | 63.7% |
| 4h08A00 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.77 | 49.0 | 5.17e-01 | 96.3% | 69.5% |
| 2hsjD00 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.77 | 50.0 | 5.05e-01 | 95.8% | 65.4% |
| 1srrC00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.76 | 37.0 | 4.90e-01 | 96.3% | 83.5% |
| 4lhsA02 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.75 | 50.0 | 5.33e-01 | 96.3% | 76.1% |
| 3skvA02 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.74 | 51.0 | 5.32e-01 | 95.8% | 74.5% |
| 3dc7A00 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.69 | 51.0 | 5.15e-01 | 98.1% | 76.1% |
| 2wabA02 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.69 | 54.0 | 5.46e-01 | 96.3% | 81.3% |
| 4q9aA00 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.68 | 54.0 | 5.37e-01 | 99.5% | 79.9% |
| 3rjtA00 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.68 | 52.0 | 5.26e-01 | 99.5% | 79.4% |
| 4k7jA01 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.67 | 52.0 | 5.19e-01 | 100.0% | 76.5% |
| 2waaA02 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.67 | 52.0 | 5.32e-01 | 96.8% | 82.1% |
| 1id1A00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.67 | 38.0 | 4.48e-01 | 95.8% | 79.1% |
| 4q7qB00 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.65 | 51.0 | 4.78e-01 | 95.8% | 66.9% |
| 4xvhA02 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.65 | 54.0 | 5.35e-01 | 96.3% | 83.3% |
| 6se1A01 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.65 | 50.0 | 4.76e-01 | 96.3% | 68.8% |
| 3v3tA01 | 3.40.50.1440 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Tubulin/FtsZ, GTPase domain | 0.62 | 44.0 | 4.56e-01 | 96.8% | 75.6% |
| 5y5nA01 | 3.40.50.1220 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › TPP-binding domain | 0.62 | 37.0 | 3.95e-01 | 100.0% | 66.1% |
| 2w9xA02 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.62 | 50.0 | 5.01e-01 | 96.3% | 81.3% |
| 3u37A02 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.61 | 55.0 | 5.23e-01 | 96.3% | 82.7% |
| 4hyqA00 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.60 | 50.0 | 4.84e-01 | 96.8% | 79.2% |
| 1zmbA01 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.58 | 50.0 | 4.74e-01 | 95.8% | 78.1% |
| 3r7wA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.58 | 42.0 | 4.50e-01 | 96.8% | 86.8% |
| 1a9yA02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.58 | 45.0 | 4.63e-01 | 95.4% | 82.5% |
| 3oy2A01 | 3.40.50.11930 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.57 | 37.0 | 4.20e-01 | 95.4% | 86.3% |
| 3wrwA02 | 3.40.50.12030 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Uncharacterised protein family UPF0261, NC domain | 0.57 | 49.0 | 4.94e-01 | 96.3% | 90.0% |
| 1c9kB00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.57 | 43.0 | 4.63e-01 | 100.0% | 93.3% |
| 2c20A01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.56 | 42.0 | 4.34e-01 | 94.9% | 80.8% |
| 1sb8A01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.56 | 46.0 | 4.46e-01 | 98.1% | 78.6% |
| 2q3fA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.55 | 39.0 | 4.26e-01 | 95.8% | 86.6% |
| 3t1oA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.55 | 39.0 | 4.18e-01 | 96.8% | 82.3% |
| 4l6wB01 | 3.90.226.10 | Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 | 0.55 | 35.0 | 3.82e-01 | 92.1% | 77.6% |
| 2ielA00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.53 | 32.0 | 4.03e-01 | 95.4% | 97.7% |
| 1pbgA00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.53 | 49.0 | 3.84e-01 | 100.0% | 87.9% |
| 2aeaA00 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.53 | 47.0 | 4.57e-01 | 96.3% | 84.0% |
| 2jbmA02 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.53 | 30.0 | 3.56e-01 | 100.0% | 80.8% |
| 1fcdA02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.52 | 23.0 | 2.83e-01 | 76.4% | 59.7% |
| 2vccA03 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.52 | 47.0 | 4.07e-01 | 98.6% | 66.5% |
| 3zr5A02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.51 | 39.0 | 3.52e-01 | 98.6% | 55.9% |
| 1i24A01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.51 | 47.0 | 4.55e-01 | 95.8% | 87.7% |
| 5z1aA03 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.50 | 44.0 | 3.91e-01 | 94.0% | 99.7% |
| 1ur4A00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.50 | 40.0 | 3.29e-01 | 98.1% | 46.4% |
ECOD (49)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3902230 | 2007.5.1.8 ↗ | a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL_2 | 0.79 | 49.0 | 5.34e-01 | 96.8% | 73.3% |
| 4145907 | 2007.5.1.8 ↗ | a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL_2 | 0.79 | 48.0 | 5.30e-01 | 95.8% | 74.7% |
| 2440218 | 2007.5.1.8 ↗ | a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL_2 | 0.78 | 49.0 | 5.16e-01 | 95.8% | 67.7% |
| 3398275 | 2007.5.1.8 ↗ | a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL_2 | 0.78 | 49.0 | 4.88e-01 | 95.8% | 60.0% |
| 3511453 | 2007.5.1.8 ↗ | a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL_2 | 0.78 | 49.0 | 5.02e-01 | 95.8% | 64.3% |
| 3584467 | 2007.5.1.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase | 0.77 | 48.0 | 5.29e-01 | 95.8% | 76.0% |
| 10054 | 2007.5.1.8 ↗ | a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL_2 | 0.77 | 50.0 | 5.08e-01 | 95.8% | 66.4% |
| 3286890 | 2003.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains | 0.73 | 50.0 | 5.24e-01 | 100.0% | 74.5% |
| 4961413 | 2007.5.1.10 ↗ | a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL_3 | 0.73 | 49.0 | 4.90e-01 | 96.3% | 66.4% |
| 3388009 | 2007.5.1.8 ↗ | a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL_2 | 0.72 | 54.0 | 5.36e-01 | 100.0% | 73.3% |
| 3324636 | 2007.5.1.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL | 0.72 | 53.0 | 4.99e-01 | 95.8% | 64.4% |
| 10063 | 2007.5.1.8 ↗ | a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL_2 | 0.71 | 52.0 | 5.36e-01 | 98.1% | 77.8% |
| 1158362 | 2007.5.1.8 ↗ | a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL_2 | 0.70 | 49.0 | 5.05e-01 | 96.3% | 74.3% |
| 4018681 | 2007.5.1.8 ↗ | a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL_2 | 0.69 | 52.0 | 5.14e-01 | 96.8% | 73.3% |
| 4942120 | 2007.1.3.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › B12-binding | 0.68 | 39.0 | 4.18e-01 | 97.7% | 64.9% |
| 4099371 | 2003.1.1.28 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › TrkA_N | 0.68 | 40.0 | 4.85e-01 | 95.8% | 86.2% |
| 1298650 | 2007.5.1.8 ↗ | a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL_2 | 0.68 | 54.0 | 5.37e-01 | 99.5% | 79.9% |
| 2723705 | 2007.5.1.8 ↗ | a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL_2 | 0.67 | 51.0 | 5.21e-01 | 96.3% | 80.2% |
| 4030888 | 2007.5.1.8 ↗ | a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL_2 | 0.67 | 53.0 | 5.11e-01 | 99.5% | 73.9% |
| 4954719 | 2007.5.1.29 ↗ | a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › DUF6270 | 0.66 | 60.0 | 5.67e-01 | 96.3% | 85.1% |
| 1498190 | 2007.5.1.8 ↗ | a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL_2 | 0.65 | 53.0 | 5.33e-01 | 95.8% | 83.3% |
| 3585210 | 2007.5.1.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase | 0.64 | 48.0 | 4.91e-01 | 96.3% | 77.2% |
| 5065122 | 2004.1.1.16 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Arf | 0.64 | 40.0 | 4.23e-01 | 96.8% | 68.7% |
| 3285907 | 2007.5.1.8 ↗ | a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL_2 | 0.63 | 55.0 | 5.15e-01 | 98.1% | 76.2% |
| 3778417 | 2007.5.1.21 ↗ | a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › NXPE4_C | 0.63 | 49.0 | 4.34e-01 | 97.7% | 57.7% |
| 3288388 | 2003.1.1.61 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › KR | 0.62 | 52.0 | 4.84e-01 | 100.0% | 72.7% |
| 3184816 | 2007.5.1.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL | 0.60 | 54.0 | 5.31e-01 | 97.7% | 87.8% |
| 5052305 | 2004.1.1.119 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Gtr1_RagA | 0.60 | 43.0 | 4.74e-01 | 96.8% | 89.3% |
| 4288654 | 2008.1.1.7 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › ERCC4 | 0.60 | 34.0 | 4.08e-01 | 96.3% | 81.4% |
| None | — | 0.59 | 39.0 | 4.35e-01 | 96.3% | 82.3% | |
| 5058170 | 2007.5.1.8 ↗ | a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL_2 | 0.59 | 49.0 | 4.50e-01 | 96.3% | 68.4% |
| 4019430 | 2007.5.1.8 ↗ | a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL_2 | 0.58 | 53.0 | 4.91e-01 | 98.6% | 76.7% |
| 3283194 | 2007.5.1.8 ↗ | a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL_2 | 0.58 | 53.0 | 4.85e-01 | 97.2% | 77.0% |
| 3949867 | 2007.1.3.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like | 0.58 | 37.0 | 4.24e-01 | 96.3% | 86.3% |
| 3737089 | 2484.1.1.57 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Ydc2-catalyt | 0.57 | 35.0 | 3.56e-01 | 98.6% | 58.6% |
| 3776724 | 2007.5.1.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase | 0.57 | 54.0 | 4.93e-01 | 100.0% | 78.2% |
| 3278599 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.57 | 30.0 | 3.93e-01 | 75.5% | 92.2% |
| 3542185 | 2007.5.1.21 ↗ | a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › NXPE4_C | 0.56 | 51.0 | 4.38e-01 | 100.0% | 64.5% |
| 3509799 | 2004.1.1.119 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Gtr1_RagA | 0.56 | 40.0 | 4.00e-01 | 96.3% | 70.9% |
| 3229980 | 2007.1.9.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) | 0.55 | 37.0 | 4.25e-01 | 96.3% | 92.9% |
| 4030195 | 2004.1.1.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA | 0.55 | 39.0 | 4.06e-01 | 100.0% | 78.5% |
| 3720313 | 2484.1.1.57 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Ydc2-catalyt | 0.54 | 38.0 | 3.56e-01 | 95.8% | 56.0% |
| 4355422 | 2006.1.4.4 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N | 0.54 | 27.0 | 3.01e-01 | 95.8% | 57.1% |
| 3579500 | 2004.1.1.119 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Gtr1_RagA | 0.53 | 43.0 | 4.34e-01 | 96.3% | 84.7% |
| 4022696 | 2003.1.1.20 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Epimerase | 0.52 | 47.0 | 4.22e-01 | 96.8% | 70.4% |
| 5014964 | 7512.1.1.30 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 | 0.52 | 38.0 | 4.10e-01 | 95.4% | 87.6% |
| 3955072 | 7579.1.1.9 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Esterase | 0.52 | 46.0 | 4.15e-01 | 96.3% | 72.0% |
| 3730250 | 2008.1.1.7 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › ERCC4 | 0.52 | 42.0 | 4.17e-01 | 98.1% | 81.3% |
| 3525352 | 2004.1.1.119 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Gtr1_RagA | 0.51 | 42.0 | 4.16e-01 | 96.8% | 81.8% |