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rifoxyc1_full_scaffold_3_prodigal-single.1__X__X__00199

Bact-Vir

rifoxyc1_full_scaffold_3_prodigal-single.1__X__X__00199

Identity

Kingdom:
phage

Quality

73.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-89_111-130
PDB
Domain cluster: representative
D2 medium residues 131-220
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ep3B01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.58 38.0 3.71e-01 98.9% 60.6%
1vq8B02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.52 39.0 3.41e-01 94.4% 51.8%
3ialA03 3.30.110.30 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › C-terminal domain of ProRS 0.52 34.0 3.65e-01 94.4% 78.2%
3p26A03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.52 40.0 3.78e-01 98.9% 68.2%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1877632 1.1.7.7 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.58 38.0 3.70e-01 98.9% 58.8%
109 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.58 38.0 3.68e-01 98.9% 59.4%
3741512 1.1.8.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.53 39.0 3.77e-01 97.8% 67.6%
5007084 1.1.7.28 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel 0.52 40.0 3.82e-01 100.0% 69.5%
4998973 328.2.1.1 ↗ a+b two layers › IF3-like › C-terminal domain of ProRS › C-terminal domain of ProRS › ProRS-C_1 0.52 33.0 3.54e-01 94.4% 73.4%