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rifoxyc1_full_scaffold_3_prodigal-single.1__X__X__00212

Bact-Vir

rifoxyc1_full_scaffold_3_prodigal-single.1__X__X__00212

Identity

Kingdom:
phage

Quality

62.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 294-342
PDB
Domain cluster: representative
CATH (34)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3r2cA00 1.10.940.10 Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like 0.78 66.0 4.84e-01 100.0% 62.3%
2rinA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.77 55.0 3.69e-01 75.5% 40.4%
3e3vA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 60.0 5.84e-01 100.0% 94.6%
2g6zA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.71 59.0 4.27e-01 100.0% 32.7%
4v1gA00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.71 49.0 4.10e-01 77.6% 42.4%
2esbA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.71 60.0 4.18e-01 100.0% 29.6%
4d3pA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.70 58.0 4.23e-01 100.0% 32.7%
2j16A00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.70 58.0 4.33e-01 100.0% 36.1%
1yn9B00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.70 57.0 3.99e-01 95.9% 27.8%
4ki9A00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.69 57.0 4.09e-01 100.0% 30.6%
3emuA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.69 57.0 4.16e-01 100.0% 33.3%
3d5lA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 52.0 5.37e-01 100.0% 97.8%
2r0bA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.68 55.0 4.01e-01 100.0% 31.1%
4h63K00 1.10.287.3490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.66 46.0 3.70e-01 77.6% 36.7%
2w4sA00 1.10.10.1440 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PHAX RNA-binding domain 0.66 48.0 4.04e-01 79.6% 65.1%
4ui9J00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.65 49.0 2.80e-01 91.8% 8.1%
1tj7A01 1.10.275.10 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) 0.64 46.0 3.59e-01 77.6% 40.0%
4k08A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.64 52.0 3.84e-01 98.0% 82.6%
1wleA01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.63 46.0 3.53e-01 79.6% 35.1%
4eqyA02 1.20.1180.10 Mainly Alpha › Up-down Bundle › Udp N-acetylglucosamine O-acyltransferase; Domain 2 › Udp N-acetylglucosamine O-acyltransferase, C-terminal domain 0.62 52.0 4.67e-01 95.9% 68.6%
2o8xA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 46.0 4.37e-01 95.9% 67.2%
1wpbG01 1.10.287.680 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.59 39.0 3.86e-01 81.6% 63.0%
3iylU02 1.10.287.1520 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.59 39.0 3.89e-01 71.4% 67.9%
2bduA02 1.10.150.340 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Pyrimidine 5'-nucleotidase (UMPH-1), N-terminal domain 0.58 41.0 3.65e-01 77.6% 54.1%
5b1aH00 1.10.10.140 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Cytochrome c oxidase, subunit VIb 0.57 46.0 4.11e-01 100.0% 63.3%
3kd3A02 1.10.150.210 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Phosphoserine phosphatase; domain 2 0.56 41.0 3.89e-01 81.6% 68.3%
2c5iT00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.56 46.0 3.88e-01 98.0% 79.8%
8ctsB01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.54 45.0 3.81e-01 100.0% 55.2%
2elcA01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.53 41.0 3.93e-01 100.0% 74.6%
4nv0A02 1.10.150.340 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Pyrimidine 5'-nucleotidase (UMPH-1), N-terminal domain 0.53 37.0 3.30e-01 77.6% 48.8%
2cazD00 6.10.140.820 Special › Helix non-globular › Helix Hairpins › 0.53 36.0 3.49e-01 77.6% 61.7%
3mggA02 6.10.140.1580 Special › Helix non-globular › Helix Hairpins › 0.52 40.0 3.55e-01 100.0% 80.9%
1y74A00 1.10.287.650 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › L27 domain 0.51 38.0 3.65e-01 83.7% 70.2%
6g94A00 1.20.950.20 Mainly Alpha › Up-down Bundle › Fumarate Reductase Cytochrome B subunit › Transmembrane di-heme cytochromes, Chain C 0.50 42.0 2.99e-01 100.0% 79.7%
ECOD (35)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3345767 101.1.10.7 alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C 0.88 80.0 5.81e-01 100.0% 39.2%
3953005 195.1.1.1 alpha complex topology › NusB-like › NusB-like › NusB-like › NusB 0.84 71.0 5.01e-01 95.9% 55.3%
4600685 195.1.1.1 alpha complex topology › NusB-like › NusB-like › NusB-like › NusB 0.82 71.0 5.13e-01 100.0% 60.7%
3828609 101.1.10.7 alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C 0.81 68.0 5.24e-01 100.0% 41.8%
4569734 195.1.1.1 alpha complex topology › NusB-like › NusB-like › NusB-like › NusB 0.78 66.0 4.95e-01 100.0% 65.4%
4434935 195.1.1.1 alpha complex topology › NusB-like › NusB-like › NusB-like › NusB 0.75 63.0 4.68e-01 100.0% 61.4%
4025383 2007.2.3.0 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II 0.75 66.0 4.58e-01 100.0% 31.0%
4085415 101.35.1.1 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH2 0.73 57.0 5.69e-01 100.0% 88.0%
3480122 2007.2.3.2 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › DSPc 0.73 62.0 4.55e-01 100.0% 35.6%
4995688 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.71 60.0 5.81e-01 98.0% 89.1%
4944387 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.70 59.0 4.71e-01 100.0% 50.5%
3319321 101.35.1.1 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH2 0.70 54.0 5.54e-01 100.0% 97.8%
4575061 101.35.1.1 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH2 0.70 54.0 5.38e-01 100.0% 88.0%
4536531 101.35.1.1 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH2 0.70 54.0 5.44e-01 100.0% 90.0%
4466751 101.35.1.1 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH2 0.69 53.0 5.51e-01 95.9% 97.8%
4167193 101.35.1.1 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH2 0.69 54.0 5.53e-01 100.0% 100.0%
5080578 103.1.1.0 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.69 50.0 4.89e-01 79.6% 70.9%
3261605 198.1.1.2 alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 0.68 55.0 4.89e-01 100.0% 73.8%
3924079 198.1.1.0 alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.68 57.0 4.87e-01 100.0% 84.7%
4197338 101.35.1.1 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH2 0.68 53.0 5.36e-01 95.9% 90.0%
3924840 101.1.1.76 alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2 0.68 54.0 5.28e-01 100.0% 83.6%
3636036 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.67 55.0 5.29e-01 100.0% 80.0%
3439696 101.35.1.1 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH2 0.67 55.0 5.28e-01 100.0% 81.7%
3772897 2004.5.1.2 a/b three-layered sandwiches › P-loop domains-like › Differentially expressed in normal cells and neoplasia (DENN) domain › Differentially expressed in normal cells and neoplasia (DENN) domain › Folliculin_C 0.66 53.0 3.55e-01 100.0% 20.9%
3218795 548.1.1.0 alpha duplicates or obligate multimers › GRIP domain › GRIP domain › GRIP domain 0.66 45.0 4.65e-01 75.5% 77.8%
4500830 101.35.1.1 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH2 0.66 52.0 5.26e-01 100.0% 92.0%
3959012 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.65 53.0 4.58e-01 100.0% 56.5%
3651776 4106.1.1.1 few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC 0.63 45.0 3.11e-01 83.7% 20.5%
4957413 101.1.2.244 alpha arrays › HTH › HTH › winged helix domain › HTH_21 0.62 48.0 4.81e-01 100.0% 92.0%
3519172 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.62 46.0 4.60e-01 98.0% 86.0%
3737171 509.1.1.1 alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH 0.60 46.0 4.48e-01 95.9% 93.3%
4978898 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.59 47.0 4.85e-01 98.0% 100.0%
3818805 509.1.1.1 alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH 0.58 46.0 4.38e-01 100.0% 90.8%
144301 5041.1.1.1 extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › ATP-synt_C 0.58 40.0 3.59e-01 77.6% 49.3%
3245973 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 44.0 2.61e-01 95.9% 41.6%
D2 medium residues 165-257
PDB
Domain cluster: representative
CATH (49)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2dq0A01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.88 62.0 5.88e-01 72.0% 63.6%
1uurA01 1.20.58.240 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › STAT; domain 1 0.83 70.0 6.56e-01 89.2% 99.1%
2i0mA02 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.82 67.0 6.53e-01 87.1% 95.0%
3uumA00 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.81 70.0 6.33e-01 92.5% 90.2%
5j1hA01 1.20.58.1060 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.81 69.0 5.44e-01 91.4% 57.7%
3mq1A01 1.20.58.970 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.80 63.0 6.36e-01 81.7% 100.0%
1lkoA01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.80 67.0 5.77e-01 91.4% 95.9%
1t72A01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.78 67.0 6.16e-01 92.5% 90.6%
1j5wA02 1.20.58.180 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Class II aaRS and biotin synthetases; domain 2 0.78 61.0 6.59e-01 88.2% 100.0%
7qx4A01 1.20.190.10 Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › Pesticidal crystal protein, N-terminal domain 0.77 70.0 5.14e-01 98.9% 44.4%
4r42A01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.77 65.0 5.08e-01 90.3% 88.2%
1ciyA01 1.20.190.10 Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › Pesticidal crystal protein, N-terminal domain 0.77 69.0 5.17e-01 98.9% 52.9%
3fseB02 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.76 64.0 5.46e-01 90.3% 95.8%
1sumB01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.75 64.0 6.13e-01 92.5% 98.1%
1yxrA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.75 57.0 6.28e-01 90.3% 100.0%
1xg2B00 1.20.140.40 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Invertase/pectin methylesterase inhibitor family protein 0.74 59.0 5.03e-01 86.0% 54.3%
4dwlA00 1.20.1440.60 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence 0.74 62.0 5.92e-01 94.6% 77.8%
3c1yA02 1.20.1260.110 Mainly Alpha › Up-down Bundle › Ferritin › DNA integrity scanning linker region 0.74 62.0 5.27e-01 90.3% 93.2%
4iggA01 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.73 47.0 5.34e-01 72.0% 89.6%
4l8iB00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.73 58.0 5.45e-01 84.9% 95.5%
2nrjA01 1.20.1170.10 Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › 0.73 58.0 3.91e-01 84.9% 63.6%
4it4A02 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.73 65.0 6.64e-01 98.9% 100.0%
2rldA00 1.20.1440.60 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence 0.72 60.0 5.56e-01 87.1% 78.1%
5jrcA00 1.20.58.2140 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.72 59.0 4.68e-01 89.2% 54.8%
1rj1A00 1.20.140.40 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Invertase/pectin methylesterase inhibitor family protein 0.71 56.0 4.79e-01 83.9% 54.1%
1yo7A00 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.71 57.0 5.27e-01 87.1% 75.8%
1jnrA03 1.20.58.100 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain 0.71 64.0 5.80e-01 96.8% 86.0%
4jgiA01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.71 51.0 5.40e-01 74.2% 86.3%
4kb2A01 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.71 58.0 5.51e-01 89.2% 100.0%
1x8zB00 1.20.140.40 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Invertase/pectin methylesterase inhibitor family protein 0.71 58.0 4.98e-01 89.2% 56.5%
6dlzA01 1.20.140.150 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › 0.71 64.0 5.11e-01 100.0% 66.9%
1t98A02 1.20.58.590 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Chromosome partition protein MukF, middle domain 0.71 62.0 5.20e-01 98.9% 90.2%
1lvfB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.70 60.0 5.84e-01 93.5% 100.0%
5wp3B00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.70 57.0 5.58e-01 89.2% 100.0%
1wfdA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.69 57.0 5.73e-01 100.0% 89.2%
2fefA01 1.20.1440.70 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › PA2201 N-terminal domain-like 0.69 62.0 5.60e-01 98.9% 84.8%
1j1jA02 1.20.58.200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 0.68 56.0 5.79e-01 92.5% 97.6%
4gyvE00 1.20.900.10 Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain 0.67 58.0 4.52e-01 97.8% 68.4%
4oydB00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.67 54.0 5.04e-01 89.2% 100.0%
6xxvC00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.66 51.0 4.85e-01 82.8% 97.3%
1ki1B01 1.20.900.10 Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain 0.65 54.0 4.28e-01 92.5% 95.0%
4yonA01 1.20.900.10 Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain 0.65 57.0 4.39e-01 98.9% 92.1%
2gscC00 1.20.1440.60 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence 0.64 52.0 5.00e-01 91.4% 75.5%
2vkzA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.63 45.0 3.22e-01 73.1% 48.9%
4wqoD00 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.63 51.0 4.45e-01 88.2% 89.4%
1r0dA00 1.20.1410.10 Mainly Alpha › Up-down Bundle › I/LWEQ domain › I/LWEQ domain 0.62 55.0 4.35e-01 100.0% 96.4%
1nigA00 1.20.1200.10 Mainly Alpha › Up-down Bundle › Hypothetical Protein Ta1238; Chain: A; › Cobalamin adenosyltransferase-like 0.58 47.0 4.14e-01 91.4% 97.3%
4hzuS00 1.10.1760.20 Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › 0.57 42.0 3.52e-01 79.6% 47.6%
1urvA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.56 47.0 4.01e-01 93.5% 89.0%
ECOD (80)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3321310 603.1.1.5 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin-6_N 0.85 70.0 6.37e-01 87.1% 86.7%
3934928 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.85 68.0 6.83e-01 84.9% 100.0%
4161991 604.12.1.4 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › ATG1-like_MIT1 0.84 73.0 5.97e-01 90.3% 80.0%
4213065 150.1.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.84 72.0 5.95e-01 92.5% 64.4%
3273217 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.83 70.0 6.98e-01 88.2% 91.6%
3642421 603.1.1.5 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin-6_N 0.83 72.0 6.38e-01 90.3% 87.2%
3220199 174.1.1.1 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin 0.83 67.0 5.50e-01 83.9% 54.8%
3932692 604.6.1.0 alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain 0.83 63.0 6.46e-01 79.6% 100.0%
3628698 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.82 65.0 5.98e-01 82.8% 95.7%
3232264 109.25.1.1 alpha superhelices › Repetitive alpha hairpins › GPCR-autoproteolysis inducing domain subdomain A › GPCR-autoproteolysis inducing domain subdomain A › GAIN 0.82 66.0 5.94e-01 86.0% 100.0%
4387572 603.1.1.201 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › AflR 0.81 73.0 5.83e-01 97.8% 64.4%
3935428 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.81 74.0 5.91e-01 100.0% 71.7%
4606152 4163.1.1.1 alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like › Sld5 0.81 60.0 4.83e-01 77.4% 65.3%
4021431 174.1.1.0 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.81 68.0 5.87e-01 90.3% 76.4%
4967572 604.5.1.2 alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PhoU 0.80 68.0 5.11e-01 88.2% 47.0%
3260973 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.80 74.0 6.99e-01 98.9% 94.5%
3735296 603.5.1.0 alpha bundles › STAT-like › FlgN-like › FlgN-like 0.80 69.0 5.39e-01 94.6% 81.5%
3938757 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.79 71.0 6.00e-01 97.8% 79.3%
3939260 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.79 63.0 6.18e-01 84.9% 91.0%
3673033 604.1.1.61 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › DUF6857 0.79 66.0 5.32e-01 90.3% 56.6%
3559622 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.78 65.0 5.40e-01 88.2% 79.4%
3408380 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.78 65.0 6.33e-01 88.2% 94.0%
3406518 5054.1.1.61 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › ELO 0.77 68.0 4.97e-01 94.6% 72.8%
5065235 101.1.2.738 alpha arrays › HTH › HTH › winged helix domain › Vir_act_alpha_C 0.77 72.0 5.64e-01 100.0% 85.9%
3532924 174.1.1.43 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › CD20 0.77 70.0 5.67e-01 98.9% 80.0%
3524431 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.77 65.0 5.88e-01 92.5% 88.0%
3211044 633.10.1.0 alpha bundles › Bromodomain-like › IVS-encoded protein-like › IVS-encoded protein-like 0.76 65.0 5.94e-01 91.4% 74.2%
5041130 601.14.1.0 alpha bundles › Four-helical up-and-down bundle › Hemerythrin › Hemerythrin 0.76 62.0 5.64e-01 88.2% 81.6%
3834159 603.1.1.17 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › SNARE 0.76 63.0 4.94e-01 87.1% 53.3%
3591755 604.3.1.0 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain 0.75 59.0 6.04e-01 82.8% 92.2%
3313934 622.4.1.0 alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related 0.75 61.0 6.11e-01 87.1% 100.0%
3225511 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.75 63.0 5.28e-01 92.5% 66.9%
4022610 4121.1.1.0 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.75 67.0 4.52e-01 100.0% 77.4%
4420971 109.25.1.1 alpha superhelices › Repetitive alpha hairpins › GPCR-autoproteolysis inducing domain subdomain A › GPCR-autoproteolysis inducing domain subdomain A › GAIN 0.75 61.0 5.53e-01 88.2% 98.4%
3879044 174.1.1.43 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › CD20 0.75 62.0 5.62e-01 89.2% 86.4%
3270005 5000.4.1.1 alpha arrays › Toxins' membrane translocation domains › delta-Endotoxin (insectocide), N-terminal domain › delta-Endotoxin (insectocide), N-terminal domain › Endotoxin_N 0.74 65.0 4.77e-01 98.9% 42.7%
3803325 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.74 68.0 6.38e-01 97.8% 98.2%
3244235 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.74 57.0 5.58e-01 81.7% 86.0%
3616821 633.21.1.0 alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 0.74 62.0 5.53e-01 90.3% 82.3%
3513593 174.1.1.0 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.74 68.0 5.69e-01 100.0% 74.8%
3913809 150.1.1.101 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › MARVEL 0.74 62.0 5.28e-01 91.4% 68.0%
3864732 633.23.1.22 alpha bundles › Bromodomain-like › Claudin › Claudin › MARVEL 0.74 62.0 5.11e-01 92.5% 68.2%
3780523 633.23.1.34 alpha bundles › Bromodomain-like › Claudin › Claudin › CD20 0.74 67.0 5.55e-01 98.9% 76.2%
3709676 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.74 67.0 4.71e-01 98.9% 68.4%
3707321 603.2.1.0 alpha bundles › STAT-like › STAT › STAT 0.73 66.0 4.55e-01 98.9% 60.6%
3401408 174.1.1.0 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.73 68.0 5.67e-01 98.9% 77.3%
4872038 633.10.1.2 alpha bundles › Bromodomain-like › IVS-encoded protein-like › IVS-encoded protein-like › Bbp7-like 0.73 63.0 5.76e-01 94.6% 71.3%
3553058 605.3.1.0 alpha duplicates or obligate multimers › ROP-like › Nonstructural protein ns2, Nep, M1-binding domain › Nonstructural protein ns2, Nep, M1-binding domain 0.73 64.0 5.46e-01 97.8% 61.4%
3520835 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.73 66.0 5.08e-01 100.0% 60.5%
3592632 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.73 62.0 6.18e-01 90.3% 92.6%
3406569 174.1.1.0 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.73 67.0 5.79e-01 100.0% 73.4%
3510469 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.73 61.0 5.81e-01 92.5% 93.6%
4937575 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.73 55.0 5.66e-01 80.6% 94.4%
3936623 633.10.1.0 alpha bundles › Bromodomain-like › IVS-encoded protein-like › IVS-encoded protein-like 0.73 56.0 5.10e-01 82.8% 68.8%
3629651 174.1.1.0 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.72 67.0 5.52e-01 100.0% 81.9%
3525698 174.1.1.43 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › CD20 0.72 61.0 5.36e-01 91.4% 86.7%
3932492 5001.1.1.63 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srab 0.72 60.0 4.74e-01 89.2% 61.1%
3630360 174.1.1.1 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin 0.72 68.0 5.55e-01 100.0% 58.5%
5029293 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.72 65.0 5.56e-01 97.8% 66.9%
3172981 109.4.1.133 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ChAPs 0.72 64.0 3.90e-01 94.6% 34.8%
3220580 150.1.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.71 60.0 5.22e-01 92.5% 73.6%
3675187 633.4.1.1 alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor › PMEI 0.71 63.0 5.00e-01 97.8% 57.8%
3860700 109.25.1.1 alpha superhelices › Repetitive alpha hairpins › GPCR-autoproteolysis inducing domain subdomain A › GPCR-autoproteolysis inducing domain subdomain A › GAIN 0.71 59.0 5.44e-01 91.4% 77.5%
3576591 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.70 56.0 5.00e-01 87.1% 80.7%
3592583 633.10.1.0 alpha bundles › Bromodomain-like › IVS-encoded protein-like › IVS-encoded protein-like 0.69 59.0 5.51e-01 91.4% 82.6%
3736320 109.4.1.194 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_10 0.69 54.0 3.71e-01 83.9% 24.6%
3690392 5069.1.1.0 alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes 0.69 57.0 4.61e-01 91.4% 93.0%
3834205 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.69 62.0 5.05e-01 96.8% 79.4%
3817864 7016.1.1.0 extended segments › Palmitoyltransferase DHHC C-terminal domain › Palmitoyltransferase DHHC C-terminal domain › Palmitoyltransferase DHHC C-terminal domain 0.68 61.0 5.38e-01 98.9% 80.7%
3598037 601.7.1.0 alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.67 50.0 4.15e-01 77.4% 88.1%
3934926 604.3.1.0 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain 0.67 57.0 5.56e-01 91.4% 100.0%
3933728 109.4.1.590 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › NopRA1 0.67 59.0 3.75e-01 98.9% 28.4%
3481122 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.66 55.0 5.39e-01 90.3% 100.0%
3493417 4163.1.1.1 alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like › Sld5 0.66 52.0 4.41e-01 86.0% 68.1%
3377360 150.1.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.66 58.0 5.28e-01 93.5% 100.0%
3516803 109.25.1.1 alpha superhelices › Repetitive alpha hairpins › GPCR-autoproteolysis inducing domain subdomain A › GPCR-autoproteolysis inducing domain subdomain A › GAIN 0.65 57.0 5.14e-01 96.8% 72.0%
3179977 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.64 56.0 3.65e-01 98.9% 36.1%
3757733 7015.1.1.1 alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › DHHC 0.64 57.0 4.13e-01 100.0% 67.2%
3645542 150.1.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.63 51.0 4.51e-01 87.1% 78.5%
3188477 3755.4.1.0 alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain 0.61 55.0 4.11e-01 100.0% 84.0%