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rifoxyc1_full_scaffold_3_prodigal-single.1__X__X__00232
Bact-Virrifoxyc1_full_scaffold_3_prodigal-single.1__X__X__00232
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 66-138
Domain cluster:
rep: rifoxyc1_full_scaffold_3_prodigal-single.1__X__X__00232__D1-65
D2
high
residues 145-251
Domain cluster:
rep: rifcsphigho2-12_scaffold_combined_curated_prodigal-single.1__X__X__00233__D118-220
D3
medium
residues 1-65
Domain cluster:
representative
CATH (37)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2gfaB01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.72 | 50.0 | 5.10e-01 | 72.3% | 88.7% |
| 1wgsA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.72 | 52.0 | 4.11e-01 | 76.9% | 49.6% |
| 1khiA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.71 | 52.0 | 5.01e-01 | 78.5% | 85.3% |
| 6az1E03 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.69 | 53.0 | 5.10e-01 | 81.5% | 100.0% |
| 3j7aF03 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.68 | 52.0 | 5.08e-01 | 81.5% | 100.0% |
| 2dk3A00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.67 | 47.0 | 4.30e-01 | 73.8% | 75.6% |
| 3uueA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.63 | 45.0 | 3.01e-01 | 76.9% | 87.8% |
| 1yr1A00 | 3.40.50.10960 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.62 | 52.0 | 4.33e-01 | 95.4% | 57.1% |
| 4wyqB00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.62 | 44.0 | 4.31e-01 | 78.5% | 92.0% |
| 3c4bA02 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.61 | 44.0 | 4.45e-01 | 80.0% | 94.0% |
| 7tzoA01 | 1.10.1070.11 | Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › Phosphatidylinositol 3-/4-kinase, catalytic domain | 0.60 | 41.0 | 3.08e-01 | 70.8% | 70.7% |
| 2b4wA00 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.60 | 47.0 | 3.13e-01 | 87.7% | 47.1% |
| 2mdrA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.59 | 44.0 | 4.00e-01 | 84.6% | 77.7% |
| 3l8kA02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.58 | 41.0 | 3.38e-01 | 75.4% | 91.1% |
| 1xvsA00 | 2.60.40.1470 | Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain | 0.58 | 39.0 | 3.22e-01 | 70.8% | 69.9% |
| 2wtzA02 | 3.40.1190.10 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain | 0.57 | 43.0 | 3.06e-01 | 86.2% | 25.6% |
| 4dsdA00 | 3.40.1420.30 | Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › | 0.57 | 46.0 | 3.78e-01 | 92.3% | 65.1% |
| 3g7nB00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.57 | 41.0 | 2.77e-01 | 76.9% | 90.3% |
| 2y1sA00 | 2.30.60.10 | Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N | 0.57 | 40.0 | 3.46e-01 | 75.4% | 82.4% |
| 1xfsA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.56 | 42.0 | 3.24e-01 | 81.5% | 72.1% |
| 3k7cA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.56 | 40.0 | 3.45e-01 | 76.9% | 100.0% |
| 3tu3B01 | 3.30.720.80 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.56 | 38.0 | 3.64e-01 | 78.5% | 60.5% |
| 3ic9A03 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.55 | 39.0 | 3.27e-01 | 75.4% | 97.5% |
| 4jcwA02 | 2.60.40.760 | Mainly Beta › Sandwich › Immunoglobulin-like › Expansin, cellulose-binding-like domain | 0.55 | 41.0 | 3.72e-01 | 81.5% | 83.3% |
| 3a0oA03 | 2.70.98.70 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.55 | 37.0 | 2.50e-01 | 70.8% | 85.4% |
| 2re3A02 | 2.30.270.10 | Mainly Beta › Roll › duf1285 protein fold › duf1285 protein | 0.55 | 37.0 | 3.70e-01 | 72.3% | 75.7% |
| 4v1ag00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.54 | 39.0 | 3.19e-01 | 81.5% | 63.5% |
| 6cxhA03 | 2.60.40.1580 | Mainly Beta › Sandwich › Immunoglobulin-like › Particulate methane monooxygenase, b subunit. Chain: A, domain 3 | 0.54 | 38.0 | 3.00e-01 | 73.8% | 84.6% |
| 3oajA02 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.54 | 39.0 | 3.07e-01 | 78.5% | 45.8% |
| 5fmgG00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.54 | 38.0 | 2.70e-01 | 76.9% | 57.5% |
| 1b9mA03 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.53 | 36.0 | 3.58e-01 | 72.3% | 88.7% |
| 3askA02 | 2.30.30.1150 | Mainly Beta › Roll › SH3 type barrels. › | 0.53 | 42.0 | 3.35e-01 | 93.8% | 80.1% |
| 3pcrA01 | 3.10.450.460 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › EspG protein, N-terminal domain | 0.52 | 38.0 | 3.46e-01 | 80.0% | 77.7% |
| 1rypD00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.52 | 37.0 | 2.54e-01 | 75.4% | 54.8% |
| 3zfnA02 | 2.30.140.40 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Pestivirus Npro endopeptidase C53, interaction domain | 0.52 | 35.0 | 3.67e-01 | 70.8% | 80.7% |
| 4py5A01 | 3.30.310.10 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein | 0.51 | 37.0 | 3.59e-01 | 86.2% | 69.4% |
| 3mkcA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.50 | 36.0 | 2.97e-01 | 80.0% | 76.4% |
ECOD (37)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4519674 | 4.1.1.186 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF5397 | 0.86 | 63.0 | 6.69e-01 | 76.9% | 98.3% |
| 5052257 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.77 | 53.0 | 5.47e-01 | 70.8% | 80.0% |
| 4027502 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.73 | 55.0 | 5.52e-01 | 80.0% | 93.8% |
| 3917372 | 4.1.1.101 ↗ | beta barrels › SH3 › SH3 › SH3 › Tudor_2 | 0.72 | 53.0 | 5.08e-01 | 78.5% | 84.0% |
| 4945344 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.72 | 52.0 | 3.29e-01 | 76.9% | 20.3% |
| 3914131 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.70 | 51.0 | 3.22e-01 | 76.9% | 26.9% |
| 3245145 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.70 | 56.0 | 3.49e-01 | 86.2% | 27.6% |
| 3600498 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.69 | 51.0 | 3.13e-01 | 76.9% | 24.7% |
| 3223139 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.68 | 52.0 | 3.35e-01 | 84.6% | 29.8% |
| 5082700 | 2003.1.3.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain | 0.67 | 45.0 | 2.81e-01 | 70.8% | 38.5% |
| 4002892 | 109.4.1.2561 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › FATC | 0.66 | 47.0 | 2.70e-01 | 75.4% | 13.9% |
| 2122952 | 7579.1.1.14 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Lipase_3 | 0.65 | 47.0 | 3.10e-01 | 76.9% | 86.0% |
| 4945674 | 2.1.1.252 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2_C | 0.64 | 43.0 | 4.27e-01 | 72.3% | 65.7% |
| 4940372 | 2.1.1.2 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 | 0.64 | 44.0 | 4.36e-01 | 73.8% | 67.1% |
| 4971532 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.63 | 50.0 | 4.89e-01 | 84.6% | 95.7% |
| 5050497 | 2003.1.3.3 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › Pyr_redox_2 | 0.63 | 45.0 | 2.52e-01 | 75.4% | 18.2% |
| 1883336 | 1104.1.1.1 ↗ | a+b complex topology › Helicase Cch N-terminal domain › Helicase Cch N-terminal domain › Helicase Cch N-terminal domain › DUF927 | 0.63 | 45.0 | 3.55e-01 | 76.9% | 45.5% |
| 4969515 | 2003.1.2.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.63 | 45.0 | 2.74e-01 | 75.4% | 36.2% |
| 3579710 | 5.1.10.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed | 0.61 | 47.0 | 4.11e-01 | 87.7% | 88.6% |
| 3704921 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.59 | 41.0 | 3.12e-01 | 70.8% | 54.2% |
| 5043745 | 2.1.1.287 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Zn_ribbon_TiaS | 0.59 | 40.0 | 2.96e-01 | 70.8% | 38.3% |
| 3396910 | 2003.1.2.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.59 | 42.0 | 3.07e-01 | 75.4% | 95.6% |
| 3709493 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.57 | 43.0 | 3.36e-01 | 78.5% | 78.5% |
| 3787501 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.56 | 38.0 | 3.13e-01 | 73.8% | 97.1% |
| 4031999 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.56 | 42.0 | 3.98e-01 | 86.2% | 70.6% |
| 4602962 | 2.1.1.2 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 | 0.55 | 47.0 | 3.67e-01 | 98.5% | 83.3% |
| 3967128 | 2.4.1.2 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 | 0.55 | 41.0 | 4.03e-01 | 78.5% | 87.1% |
| 3698104 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.55 | 40.0 | 3.50e-01 | 78.5% | 81.7% |
| 3247746 | 5.1.4.303 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › BBS2_N, BBS2_Mid | 0.55 | 43.0 | 2.84e-01 | 89.2% | 38.4% |
| 3584039 | 5.1.5.89 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › PF31099 | 0.55 | 42.0 | 2.68e-01 | 89.2% | 33.2% |
| 2641776 | 2.1.1.2 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 | 0.54 | 46.0 | 3.65e-01 | 92.3% | 93.0% |
| 3412753 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.53 | 41.0 | 2.62e-01 | 89.2% | 21.1% |
| 4255589 | 218.1.1.8 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA | 0.53 | 39.0 | 3.43e-01 | 80.0% | 92.0% |
| 3588447 | 2003.1.1.51 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › DFP | 0.53 | 41.0 | 2.90e-01 | 90.8% | 91.3% |
| 3300506 | 4286.1.1.1 ↗ | beta complex topology › At5g01610-like › At5g01610-like › At5g01610-like › DUF538 | 0.51 | 40.0 | 3.26e-01 | 90.8% | 80.7% |
| 4003728 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.51 | 40.0 | 2.70e-01 | 89.2% | 50.5% |
| 3307236 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.50 | 36.0 | 3.08e-01 | 80.0% | 81.7% |