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rifoxyc1_full_scaffold_3_prodigal-single.1__X__X__00243
Bact-Virrifoxyc1_full_scaffold_3_prodigal-single.1__X__X__00243
Identity
- Kingdom:
- phage
Quality
80.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-92
Domain cluster:
representative
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2aehA03 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.61 | 39.0 | 3.66e-01 | 92.0% | 51.4% |
| 2vtfA02 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.60 | 34.0 | 2.72e-01 | 76.1% | 27.1% |
| 3tfiA00 | 3.30.1360.120 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 | 0.59 | 50.0 | 3.35e-01 | 95.5% | 58.0% |
| 3ulbA01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.57 | 36.0 | 3.75e-01 | 92.0% | 67.5% |
| 4pwuC00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.57 | 41.0 | 4.38e-01 | 97.7% | 84.6% |
| 3f56A01 | 3.30.70.1710 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › BMC (bacterial microcompartment) domain | 0.56 | 46.0 | 4.33e-01 | 87.5% | 90.6% |
| 3nkgA00 | 2.60.120.790 | Mainly Beta › Sandwich › Jelly Rolls › | 0.56 | 34.0 | 2.82e-01 | 77.3% | 31.2% |
| 1b4bA00 | 3.30.1360.40 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.56 | 36.0 | 4.03e-01 | 92.0% | 83.1% |
| 5suhA02 | 3.30.70.1710 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › BMC (bacterial microcompartment) domain | 0.55 | 46.0 | 4.35e-01 | 90.9% | 97.1% |
| 2phpA00 | 3.40.225.10 | Alpha Beta › 3-Layer(aba) Sandwich › L-fuculose-1-phosphate Aldolase › Class II aldolase/adducin N-terminal domain | 0.55 | 47.0 | 3.79e-01 | 97.7% | 96.7% |
| 3f1sB03 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.55 | 37.0 | 3.47e-01 | 80.7% | 54.8% |
| 7oc3A01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.53 | 34.0 | 3.41e-01 | 77.3% | 62.0% |
| 2v3mA00 | 2.40.10.230 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Probable tRNA pseudouridine synthase domain | 0.53 | 32.0 | 3.19e-01 | 77.3% | 55.3% |
| 6v04A01 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.52 | 31.0 | 2.75e-01 | 98.9% | 40.9% |
| 3devA02 | 3.10.310.30 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › | 0.51 | 40.0 | 3.70e-01 | 86.4% | 86.2% |
| 4khbC00 | 2.30.29.210 | Mainly Beta › Roll › PH-domain like › FACT complex subunit Spt16p/Cdc68p | 0.50 | 34.0 | 3.24e-01 | 87.5% | 57.5% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3211703 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.74 | 48.0 | 5.07e-01 | 83.0% | 73.8% |
| 3584885 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.68 | 43.0 | 5.12e-01 | 88.6% | 95.0% |
| 3224920 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.66 | 42.0 | 4.20e-01 | 88.6% | 63.3% |
| 3222009 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.63 | 44.0 | 4.31e-01 | 85.2% | 67.4% |
| 3237033 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.62 | 47.0 | 4.54e-01 | 92.0% | 71.0% |
| 3932897 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.61 | 43.0 | 4.32e-01 | 84.1% | 71.1% |
| 3889511 | 382.1.1.1 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › UPAR_LY6 | 0.55 | 37.0 | 3.81e-01 | 92.0% | 71.8% |
| 3505366 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.55 | 41.0 | 2.97e-01 | 80.7% | 27.7% |
| 4214410 | 73.1.1.0 ↗ | beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain | 0.54 | 36.0 | 3.91e-01 | 76.1% | 81.3% |
| 3971141 | 1.1.7.80 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RND-MFP_C | 0.53 | 33.0 | 3.35e-01 | 89.8% | 61.1% |
| 3481201 | 844.1.1.0 ↗ | beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain | 0.52 | 36.0 | 2.86e-01 | 72.7% | 59.0% |
| 3208784 | 220.1.1.13 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › DCP1 | 0.52 | 38.0 | 3.25e-01 | 79.5% | 70.0% |
| 3389451 | 4184.1.1.1 ↗ | beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › DM9 | 0.51 | 26.0 | 2.75e-01 | 76.1% | 49.3% |
| 3500437 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.50 | 36.0 | 3.12e-01 | 76.1% | 97.9% |
| 4983166 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.50 | 42.0 | 3.86e-01 | 96.6% | 70.0% |