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rifoxyc1_full_scaffold_3_prodigal-single.1__X__X__00299

Bact-Vir

rifoxyc1_full_scaffold_3_prodigal-single.1__X__X__00299

Identity

Kingdom:
phage

Quality

84.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-184
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1lrvA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.62 48.0 4.31e-01 93.2% 60.1%
4by6D02 1.25.40.800 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.59 48.0 4.47e-01 87.0% 85.8%
3au3A00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.59 53.0 4.49e-01 100.0% 76.4%
7ldgA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.58 53.0 4.96e-01 99.4% 92.3%
5ewpA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.58 53.0 4.77e-01 98.9% 80.5%
4cruB00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.58 53.0 4.60e-01 99.4% 73.7%
1gw5A00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.58 50.0 3.46e-01 98.9% 28.3%
8sorA01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.57 52.0 4.15e-01 99.4% 59.4%
3grlA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.57 52.0 3.57e-01 100.0% 39.8%
2of3A00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.56 51.0 4.47e-01 100.0% 85.0%
3c5wA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.55 49.0 4.53e-01 97.2% 79.4%
3ltjA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.55 48.0 4.73e-01 97.7% 88.0%
3nowA01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.54 48.0 3.87e-01 98.3% 66.2%
1dvpA01 1.25.40.90 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.54 41.0 4.57e-01 92.7% 100.0%
4g3aB00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.54 48.0 4.43e-01 97.7% 73.9%
8fbnB01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.54 47.0 4.34e-01 94.4% 90.5%
4gmnA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.53 48.0 3.39e-01 99.4% 46.8%
3woyA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.51 46.0 4.14e-01 100.0% 85.8%
4u2xF00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.50 45.0 4.54e-01 98.9% 100.0%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4939043 109.4.1.207 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_2 0.65 51.0 5.25e-01 96.6% 87.3%
3650655 109.4.1.150 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Ufd2P_core 0.63 57.0 3.65e-01 100.0% 59.4%
4602 109.4.1.24 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › LRV,HEAT,LRV_FeS 0.62 48.0 4.31e-01 93.2% 60.1%
3474517 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.59 54.0 3.77e-01 100.0% 55.2%
3743471 109.4.1.1435 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT, VPS15-like_hel 0.59 54.0 4.45e-01 100.0% 90.6%
3465289 109.4.1.22 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Adaptin_N 0.58 54.0 3.57e-01 100.0% 26.4%
4945178 109.4.1.207 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_2 0.58 42.0 4.62e-01 86.4% 91.0%
3495286 109.4.1.89 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Drf_FH3,Drf_GBD 0.58 53.0 4.03e-01 100.0% 57.6%
3622542 109.4.1.388 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Dopey_N 0.58 53.0 3.94e-01 100.0% 52.1%
3939077 109.4.1.1836 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF29313 0.58 53.0 3.44e-01 100.0% 29.8%
3374197 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.57 52.0 3.26e-01 100.0% 37.3%
3744285 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.57 52.0 4.28e-01 100.0% 66.3%
4012279 109.4.1.623 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Cnd1 0.57 50.0 4.35e-01 97.2% 61.8%
3611198 109.4.1.1234 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_DNAAF5 0.56 50.0 4.32e-01 98.9% 65.2%
3511603 109.4.1.371 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RTP1_C1 0.56 50.0 3.93e-01 96.0% 56.8%
3192438 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.55 51.0 4.11e-01 99.4% 77.3%
3866656 109.4.1.1674 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF30746 0.55 46.0 4.71e-01 89.8% 90.3%
3765005 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.54 49.0 3.35e-01 100.0% 31.6%
3668800 109.4.1.266 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › XMAP215_CLASP_TOG 0.54 49.0 4.11e-01 100.0% 70.0%
3359417 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.54 49.0 4.05e-01 100.0% 72.8%
4008483 109.4.1.407 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF2773 0.54 46.0 3.24e-01 91.5% 41.6%
3738255 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.54 49.0 3.99e-01 100.0% 55.3%
4961143 109.4.1.207 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_2 0.53 47.0 4.22e-01 97.7% 75.2%
3539350 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 42.0 4.24e-01 100.0% 85.0%
5000596 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 45.0 4.31e-01 96.0% 79.0%
4386501 109.4.1.3105 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT, PPP2R1A-like_HEAT, VPS15-like_hel, TPR_DNAAF5 0.52 47.0 3.67e-01 100.0% 45.6%
3448406 109.4.1.167 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Rif1_N 0.52 44.0 4.34e-01 92.1% 87.2%
3241699 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.51 39.0 4.22e-01 97.2% 96.6%
4335802 109.4.1.3098 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › LRV, LRV_FeS 0.50 44.0 4.14e-01 93.8% 83.7%
D2 high residues 187-268
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1qbkB00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.73 65.0 3.70e-01 100.0% 15.0%
4qhpA05 1.25.50.10 Mainly Alpha › Alpha Horseshoe › Zincin-like fold › Peptidase M1, alanyl aminopeptidase, C-terminal domain 0.73 64.0 4.30e-01 100.0% 50.5%
4g3aB00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.72 63.0 4.61e-01 100.0% 51.3%
8sorA01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.71 62.0 4.10e-01 100.0% 40.9%
1lshA02 1.25.10.20 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Vitellinogen, superhelical 0.70 61.0 4.12e-01 100.0% 50.7%
2x6hA01 1.25.40.70 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Phosphatidylinositol 3-kinase, accessory domain (PIK) 0.68 59.0 4.54e-01 97.6% 58.1%
4ffbC00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.66 56.0 4.14e-01 96.3% 93.5%
1te4A01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.65 55.0 5.44e-01 97.6% 100.0%
4ksaA02 1.20.140.90 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Malonyl-CoA decarboxylase, oligemerization domain 0.63 50.0 4.33e-01 89.0% 93.4%
2b6cA02 1.25.40.290 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › ARM repeat domains 0.63 53.0 5.13e-01 98.8% 94.8%
2vvwA00 1.10.437.20 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › dsDNA poxvirus 0.59 41.0 3.45e-01 73.2% 58.0%
3on2A00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.58 44.0 3.42e-01 82.9% 74.2%
3ezuA01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.55 39.0 3.12e-01 75.6% 96.7%
3akjA02 1.10.1070.20 Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › 0.53 44.0 3.47e-01 98.8% 95.5%
2eyqA07 3.90.1150.50 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Transcription-repair-coupling factor, D7 domain 0.52 43.0 3.61e-01 92.7% 83.0%
3ju1B00 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.52 44.0 2.98e-01 100.0% 74.4%
2gs4A00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.51 39.0 3.24e-01 85.4% 89.9%
2yleA00 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.51 41.0 3.35e-01 92.7% 70.2%
4dyqA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.50 41.0 3.90e-01 93.9% 100.0%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3266031 109.4.1.1477 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT, TPR_IMB1 0.73 65.0 3.73e-01 100.0% 21.3%
3485678 109.4.1.1642 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Npa1, NopRA1 0.73 63.0 3.75e-01 100.0% 22.4%
3207979 109.4.1.204 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_EZ 0.72 64.0 4.32e-01 100.0% 39.7%
3690769 109.4.1.2205 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SF3b1, HEAT_EZ, PPP2R1A-like_HEAT 0.72 63.0 3.53e-01 97.6% 15.5%
4329267 109.4.1.22 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Adaptin_N 0.72 63.0 4.19e-01 100.0% 29.9%
3989216 109.4.1.275 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Rgg_C 0.72 64.0 4.69e-01 100.0% 51.8%
5044535 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.71 62.0 5.21e-01 100.0% 81.4%
4007058 109.4.1.1283 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT, HEAT_PBS, HEAT_2 0.70 61.0 4.29e-01 100.0% 47.1%
3974374 109.4.1.207 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_2 0.70 62.0 3.94e-01 100.0% 24.6%
4141764 109.4.1.317 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Med5 0.69 60.0 3.54e-01 100.0% 23.5%
5015284 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.69 60.0 4.87e-01 100.0% 73.9%
4496191 109.4.1.317 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Med5 0.68 59.0 4.80e-01 100.0% 86.7%
4958740 109.4.1.207 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_2 0.68 59.0 4.22e-01 98.8% 48.0%
4958655 109.4.1.207 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_2 0.68 59.0 4.68e-01 100.0% 57.7%
3995884 109.4.1.353 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MOR2-PAG1_N 0.68 59.0 4.07e-01 100.0% 54.7%
3704898 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.67 58.0 3.95e-01 96.3% 40.0%
3230196 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.67 57.0 5.13e-01 100.0% 95.8%
3775904 109.4.1.1255 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Adaptin_N, Cnd1 0.64 55.0 3.70e-01 100.0% 32.6%
3814284 109.4.1.1363 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT, HEAT_EZ, TPR_IMB1 0.62 54.0 3.33e-01 100.0% 26.1%
5016390 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.62 53.0 4.24e-01 100.0% 80.0%
3862883 109.3.1.92 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › ZSWIM4-8_C 0.62 52.0 4.07e-01 97.6% 59.5%
3913527 206.1.1.14 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › ABC1 0.61 48.0 2.99e-01 89.0% 75.8%
4111424 109.4.1.317 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Med5 0.60 51.0 3.56e-01 100.0% 42.2%
3416073 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.60 49.0 3.62e-01 95.1% 76.5%
3218999 5001.1.1.16 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srt 0.59 52.0 3.51e-01 97.6% 74.8%
3168248 109.4.1.598 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Mak10 0.58 49.0 3.36e-01 100.0% 53.1%
4594351 2484.1.1.136 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutL 0.57 42.0 3.21e-01 80.5% 47.1%
4114117 1056.1.1.1 ↗ a+b two layers › tRNA pseudouridine synthase TruD insertion domain › tRNA pseudouridine synthase TruD insertion domain › tRNA pseudouridine synthase TruD insertion domain › TruD 0.52 37.0 3.10e-01 75.6% 84.0%
5039989 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.52 46.0 3.69e-01 100.0% 97.0%