←Back to structures
rifoxyd1_full_scaffold_5_prodigal-single.1__X__X__00040
Bact-Virrifoxyd1_full_scaffold_5_prodigal-single.1__X__X__00040
Identity
- Kingdom:
- phage
Quality
92.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 19-80
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01661.28 best | Macro | 53.7 | 2.60e-14 | 100.0% | 52.5% |
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5fszA00 | 3.40.220.10 | Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 | 0.97 | 87.0 | 5.53e-01 | 100.0% | 23.7% |
| 4iqyB00 | 3.40.220.10 | Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 | 0.97 | 86.0 | 5.65e-01 | 100.0% | 26.5% |
| 4d86A01 | 3.40.220.10 | Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 | 0.96 | 91.0 | 6.19e-01 | 100.0% | 33.0% |
| 2dx6A00 | 3.40.220.10 | Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 | 0.95 | 84.0 | 6.01e-01 | 100.0% | 36.7% |
| 4umlA00 | 3.40.220.10 | Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 | 0.93 | 82.0 | 5.49e-01 | 100.0% | 28.9% |
| 2acfB00 | 3.40.220.10 | Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 | 0.92 | 85.0 | 5.94e-01 | 100.0% | 35.3% |
| 5ailA00 | 3.40.220.10 | Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 | 0.92 | 80.0 | 5.51e-01 | 100.0% | 31.7% |
| 5kivA01 | 3.40.220.10 | Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 | 0.92 | 85.0 | 5.83e-01 | 100.0% | 36.0% |
| 1yd9B00 | 3.40.220.10 | Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 | 0.91 | 84.0 | 5.82e-01 | 100.0% | 33.2% |
| 3ejgA00 | 3.40.220.10 | Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 | 0.91 | 81.0 | 5.76e-01 | 100.0% | 35.8% |
| 3q71A00 | 3.40.220.10 | Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 | 0.91 | 84.0 | 5.67e-01 | 100.0% | 30.5% |
| 3ejfA00 | 3.40.220.10 | Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 | 0.90 | 80.0 | 5.70e-01 | 100.0% | 35.5% |
| 3v2bA00 | 3.40.220.10 | Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 | 0.88 | 77.0 | 5.39e-01 | 100.0% | 33.0% |
| 6ln0A01 | 3.40.220.10 | Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 | 0.86 | 76.0 | 5.42e-01 | 100.0% | 36.4% |
| 1njrA00 | 3.40.220.10 | Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 | 0.81 | 73.0 | 4.80e-01 | 100.0% | 27.3% |
| 2kmsA02 | 2.10.70.10 | Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 | 0.56 | 36.0 | 3.71e-01 | 93.5% | 70.7% |
| 3hisA02 | 4.10.470.10 | Few Secondary Structures › Irregular › Ricin (A Subunit), domain 2 › Ricin (A Subunit), domain 2 | 0.55 | 42.0 | 3.93e-01 | 87.1% | 86.4% |
| 8e9gD01 | 1.10.645.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome-c3 Hydrogenase; chain B › Cytochrome-c3 Hydrogenase, chain B | 0.52 | 42.0 | 2.68e-01 | 98.4% | 79.9% |
| 1x31D00 | 3.30.2270.10 | Alpha Beta › 2-Layer Sandwich › Folate-binding fold › Folate-binding superfamily | 0.52 | 38.0 | 3.45e-01 | 80.6% | 79.1% |
| 4lrzE02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.52 | 43.0 | 3.88e-01 | 98.4% | 77.7% |
| 5iu1B00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.52 | 42.0 | 3.65e-01 | 100.0% | 72.3% |
| 3w6wB01 | 1.10.1280.10 | Mainly Alpha › Orthogonal Bundle › di-copper center containing domain from catechol oxidase › Di-copper center containing domain from catechol oxidase | 0.52 | 41.0 | 2.61e-01 | 96.8% | 48.7% |
| 2e8yA01 | 2.60.40.2320 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.50 | 41.0 | 3.64e-01 | 100.0% | 80.2% |
| 2qqrA02 | 3.10.330.70 | Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › | 0.50 | 37.0 | 3.83e-01 | 90.3% | 96.2% |
| 3ewkA03 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.50 | 40.0 | 3.53e-01 | 98.4% | 79.4% |
ECOD (56)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3977898 | 7529.1.1.1 ↗ | a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › Macro | 0.98 | 94.0 | 6.46e-01 | 100.0% | 35.4% |
| 2799839 | 7529.1.1.1 ↗ | a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › Macro | 0.97 | 93.0 | 6.27e-01 | 100.0% | 32.8% |
| 4011492 | 7529.1.1.0 ↗ | a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like | 0.97 | 87.0 | 5.63e-01 | 100.0% | 25.8% |
| 3840476 | 7529.1.1.1 ↗ | a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › Macro | 0.97 | 92.0 | 6.08e-01 | 100.0% | 29.5% |
| 3872863 | 7529.1.1.1 ↗ | a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › Macro | 0.96 | 86.0 | 5.47e-01 | 100.0% | 23.7% |
| 3193423 | 7529.1.1.1 ↗ | a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › Macro | 0.96 | 86.0 | 5.40e-01 | 100.0% | 22.3% |
| 3698641 | 7529.1.1.1 ↗ | a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › Macro | 0.96 | 86.0 | 5.42e-01 | 100.0% | 22.7% |
| 3563715 | 7529.1.1.1 ↗ | a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › Macro | 0.96 | 91.0 | 6.05e-01 | 100.0% | 30.2% |
| 5049163 | 7529.1.1.1 ↗ | a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › Macro | 0.96 | 85.0 | 6.00e-01 | 100.0% | 35.2% |
| 4311414 | 7529.1.1.1 ↗ | a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › Macro | 0.96 | 91.0 | 6.33e-01 | 100.0% | 36.5% |
| 4945359 | 7529.1.1.1 ↗ | a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › Macro | 0.96 | 85.0 | 5.90e-01 | 100.0% | 33.5% |
| 4947078 | 7529.1.1.1 ↗ | a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › Macro | 0.95 | 85.0 | 5.82e-01 | 100.0% | 32.2% |
| 3955833 | 7529.1.1.1 ↗ | a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › Macro | 0.95 | 84.0 | 5.86e-01 | 100.0% | 34.1% |
| 5049732 | 7529.1.1.1 ↗ | a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › Macro | 0.95 | 88.0 | 6.10e-01 | 100.0% | 34.9% |
| 223677 | 7529.1.1.1 ↗ | a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › Macro | 0.95 | 83.0 | 5.88e-01 | 100.0% | 34.9% |
| 4859819 | 7529.1.1.1 ↗ | a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › Macro | 0.94 | 83.0 | 6.41e-01 | 100.0% | 47.2% |
| 3313696 | 7529.1.1.1 ↗ | a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › Macro | 0.94 | 82.0 | 5.27e-01 | 100.0% | 23.9% |
| 2719122 | 7529.1.1.1 ↗ | a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › Macro | 0.93 | 86.0 | 6.00e-01 | 100.0% | 35.1% |
| 4837846 | 7529.1.1.0 ↗ | a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like | 0.92 | 84.0 | 5.92e-01 | 100.0% | 35.3% |
| 4264896 | 7529.1.1.1 ↗ | a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › Macro | 0.92 | 83.0 | 5.25e-01 | 100.0% | 23.1% |
| 1501440 | 7529.1.1.1 ↗ | a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › Macro | 0.92 | 80.0 | 5.50e-01 | 100.0% | 31.3% |
| 4615915 | 7529.1.1.1 ↗ | a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › Macro | 0.91 | 80.0 | 5.49e-01 | 100.0% | 30.7% |
| 3649940 | 7529.1.1.1 ↗ | a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › Macro | 0.91 | 86.0 | 5.72e-01 | 100.0% | 30.5% |
| 3784324 | 7529.1.1.1 ↗ | a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › Macro | 0.91 | 86.0 | 5.39e-01 | 100.0% | 24.0% |
| 3556404 | 7529.1.1.1 ↗ | a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › Macro | 0.91 | 85.0 | 5.71e-01 | 100.0% | 30.2% |
| 135158 | 7529.1.1.1 ↗ | a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › Macro | 0.91 | 81.0 | 5.69e-01 | 100.0% | 34.1% |
| 3253827 | 7529.1.1.1 ↗ | a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › Macro | 0.91 | 79.0 | 5.08e-01 | 100.0% | 22.7% |
| 3765796 | 7529.1.1.1 ↗ | a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › Macro | 0.91 | 85.0 | 5.72e-01 | 100.0% | 31.0% |
| 4864750 | 7529.1.1.1 ↗ | a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › Macro | 0.91 | 84.0 | 5.86e-01 | 100.0% | 38.2% |
| 3254438 | 7529.1.1.1 ↗ | a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › Macro | 0.90 | 84.0 | 5.65e-01 | 100.0% | 30.2% |
| 3840479 | 7529.1.1.1 ↗ | a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › Macro | 0.90 | 79.0 | 5.38e-01 | 100.0% | 29.7% |
| 3735302 | 7529.1.1.1 ↗ | a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › Macro | 0.90 | 84.0 | 5.49e-01 | 100.0% | 27.7% |
| 2171605 | 7529.1.1.1 ↗ | a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › Macro | 0.90 | 82.0 | 5.61e-01 | 100.0% | 31.3% |
| 3892178 | 7529.1.1.1 ↗ | a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › Macro | 0.89 | 82.0 | 5.51e-01 | 100.0% | 29.8% |
| 136666 | 7529.1.1.1 ↗ | a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › Macro | 0.89 | 81.0 | 5.75e-01 | 100.0% | 36.3% |
| 3975782 | 7529.1.1.1 ↗ | a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › Macro | 0.89 | 82.0 | 5.34e-01 | 100.0% | 27.2% |
| 4025522 | 7529.1.1.1 ↗ | a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › Macro | 0.86 | 78.0 | 5.12e-01 | 100.0% | 40.4% |
| 3879370 | 7529.1.1.1 ↗ | a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › Macro | 0.86 | 80.0 | 5.46e-01 | 100.0% | 32.5% |
| 2753366 | 7529.1.1.1 ↗ | a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › Macro | 0.86 | 76.0 | 5.39e-01 | 100.0% | 35.5% |
| 3885538 | 7529.1.1.1 ↗ | a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › Macro | 0.85 | 73.0 | 5.11e-01 | 100.0% | 32.6% |
| 3928709 | 7529.1.1.1 ↗ | a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › Macro | 0.82 | 73.0 | 5.20e-01 | 100.0% | 34.9% |
| 10500 | 7529.1.1.7 ↗ | a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › Macro_2 | 0.81 | 73.0 | 4.80e-01 | 100.0% | 27.3% |
| 4480390 | 7529.1.1.1 ↗ | a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › Macro | 0.73 | 64.0 | 4.53e-01 | 100.0% | 46.7% |
| 3393348 | 7529.1.1.3 ↗ | a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › Peptidase_M17_N | 0.72 | 63.0 | 4.62e-01 | 100.0% | 37.1% |
| 4028742 | 7529.1.1.1 ↗ | a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › Macro | 0.71 | 60.0 | 4.10e-01 | 100.0% | 26.2% |
| 10501 | 7529.1.1.0 ↗ | a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like | 0.69 | 57.0 | 4.36e-01 | 100.0% | 39.0% |
| 4055119 | 7529.1.1.3 ↗ | a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › Peptidase_M17_N | 0.67 | 53.0 | 4.00e-01 | 100.0% | 33.9% |
| 3427277 | 229.1.1.8 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like › UFD1_N2 | 0.66 | 50.0 | 4.49e-01 | 93.5% | 58.8% |
| 3605375 | 229.1.1.8 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like › UFD1_N2 | 0.60 | 44.0 | 4.00e-01 | 91.9% | 55.6% |
| 3516179 | 229.1.1.8 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like › UFD1_N2 | 0.58 | 42.0 | 3.90e-01 | 91.9% | 59.5% |
| 4565390 | 2003.1.5.25 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GidB | 0.52 | 42.0 | 2.87e-01 | 88.7% | 81.2% |
| 5048642 | 223.2.1.5 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 | 0.52 | 44.0 | 3.62e-01 | 100.0% | 53.2% |
| 3588377 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.52 | 37.0 | 3.17e-01 | 74.2% | 68.0% |
| 4970750 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.52 | 43.0 | 3.64e-01 | 100.0% | 53.8% |
| 4119925 | 7581.1.1.6 ↗ | a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Chal_sti_synt_C | 0.51 | 42.0 | 3.38e-01 | 100.0% | 86.2% |
| 3746876 | 4.1.1.101 ↗ | beta barrels › SH3 › SH3 › SH3 › Tudor_2 | 0.51 | 37.0 | 3.80e-01 | 90.3% | 85.0% |