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rifoxyd1_full_scaffold_5_prodigal-single.1__X__X__00070
Bact-Virrifoxyd1_full_scaffold_5_prodigal-single.1__X__X__00070
Identity
- Kingdom:
- phage
Quality
71.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 16-83
Domain cluster:
representative
CATH (27)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4e98C00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.69 | 55.0 | 4.85e-01 | 91.2% | 98.1% |
| 1es6A02 | 2.60.510.10 | Mainly Beta › Sandwich › EV matrix protein fold › EV matrix protein | 0.67 | 46.0 | 4.09e-01 | 72.1% | 100.0% |
| 3h20A01 | 3.30.1490.240 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain | 0.65 | 46.0 | 4.69e-01 | 76.5% | 77.3% |
| 3h2dB00 | 3.40.1550.10 | Alpha Beta › 3-Layer(aba) Sandwich › Chemotaxis protein chec › CheC-like | 0.63 | 55.0 | 4.31e-01 | 100.0% | 73.4% |
| 3ce8A00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.63 | 48.0 | 4.45e-01 | 83.8% | 97.8% |
| 3zn4A00 | 2.60.120.1180 | Mainly Beta › Sandwich › Jelly Rolls › | 0.62 | 44.0 | 3.46e-01 | 75.0% | 50.3% |
| 3p96A02 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.62 | 43.0 | 4.08e-01 | 73.5% | 96.4% |
| 3n0vA01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.61 | 42.0 | 3.95e-01 | 72.1% | 97.6% |
| 3egrA00 | 3.10.20.520 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phenylacetic acid degradation B | 0.61 | 42.0 | 4.35e-01 | 73.5% | 84.1% |
| 7dm9A01 | 3.40.1550.10 | Alpha Beta › 3-Layer(aba) Sandwich › Chemotaxis protein chec › CheC-like | 0.60 | 51.0 | 3.94e-01 | 100.0% | 67.5% |
| 2hp7A00 | 3.40.1550.10 | Alpha Beta › 3-Layer(aba) Sandwich › Chemotaxis protein chec › CheC-like | 0.60 | 51.0 | 3.84e-01 | 100.0% | 63.7% |
| 1ri6A00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.59 | 40.0 | 2.61e-01 | 72.1% | 99.7% |
| 3znuA00 | 3.30.70.1060 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dimeric alpha+beta barrel | 0.59 | 44.0 | 4.09e-01 | 85.3% | 100.0% |
| 4d8oA03 | 2.60.40.2660 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.58 | 49.0 | 4.15e-01 | 100.0% | 68.3% |
| 1u8sA01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.58 | 42.0 | 3.99e-01 | 79.4% | 97.7% |
| 3mgjA00 | 3.30.70.2690 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › LOR/SDH bifunctional enzyme, conserved domain | 0.55 | 43.0 | 3.93e-01 | 88.2% | 99.0% |
| 1darA05 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 43.0 | 4.03e-01 | 88.2% | 88.5% |
| 1qexA03 | 2.60.40.1680 | Mainly Beta › Sandwich › Immunoglobulin-like › 4-oxalocrotonate tautomerase-like | 0.55 | 39.0 | 3.37e-01 | 76.5% | 72.8% |
| 1ywhC03 | 2.10.60.10 | Mainly Beta › Ribbon › CD59 › CD59 | 0.54 | 38.0 | 3.58e-01 | 85.3% | 59.1% |
| 3bzmA00 | 3.60.120.10 | Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase | 0.54 | 45.0 | 2.80e-01 | 95.6% | 33.3% |
| 4my0A02 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.53 | 40.0 | 3.27e-01 | 83.8% | 100.0% |
| 2z0uA00 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.53 | 39.0 | 3.27e-01 | 80.9% | 48.4% |
| 2hzmG01 | 3.30.310.180 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › | 0.53 | 45.0 | 3.91e-01 | 100.0% | 100.0% |
| 2hv2A03 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.52 | 36.0 | 2.89e-01 | 73.5% | 100.0% |
| 1konA02 | 3.30.70.980 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › YebC, transcriptional regulation domain | 0.51 | 44.0 | 4.07e-01 | 100.0% | 87.8% |
| 1pvgA01 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.50 | 40.0 | 2.81e-01 | 89.7% | 61.9% |
| 3hzeA00 | 3.30.70.1860 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Uncharacterised protein family Ycf54 | 0.50 | 43.0 | 3.79e-01 | 100.0% | 96.3% |
ECOD (31)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4438218 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.68 | 46.0 | 4.00e-01 | 72.1% | 92.7% |
| 5032056 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.65 | 46.0 | 4.11e-01 | 76.5% | 88.3% |
| 3553670 | 11.1.6.5 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › UPA domain › UPA-FIIND | 0.65 | 55.0 | 4.53e-01 | 100.0% | 69.6% |
| 119357 | 11.1.6.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › UPA domain › UPA | 0.65 | 55.0 | 4.46e-01 | 100.0% | 72.9% |
| 4560889 | 11.1.6.5 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › UPA domain › UPA-FIIND | 0.64 | 55.0 | 4.61e-01 | 100.0% | 73.6% |
| 5053097 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.63 | 45.0 | 4.10e-01 | 76.5% | 95.8% |
| 3741311 | 304.44.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 › Ribosomal_S10 | 0.63 | 50.0 | 4.19e-01 | 88.2% | 75.0% |
| 5029934 | 304.100.1.1 ↗ | a+b two layers › Alpha-beta plaits › PurS-like › PurS-like › PurS | 0.63 | 56.0 | 4.29e-01 | 100.0% | 80.0% |
| 1005557 | 10.2.1.62 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › VP16-like | 0.63 | 45.0 | 3.35e-01 | 75.0% | 43.6% |
| 3608816 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.62 | 43.0 | 3.08e-01 | 75.0% | 56.7% |
| 3284390 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.61 | 44.0 | 3.89e-01 | 77.9% | 83.8% |
| 3348136 | 304.110.1.4 ↗ | a+b two layers › Alpha-beta plaits › Acylphosphatase-like › Acylphosphatase-like › UPF0176_N | 0.61 | 52.0 | 4.48e-01 | 100.0% | 89.6% |
| 3719077 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.61 | 42.0 | 3.02e-01 | 73.5% | 56.3% |
| 4976988 | 304.8.1.9 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_6 | 0.61 | 42.0 | 3.90e-01 | 73.5% | 91.1% |
| 3421380 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.61 | 44.0 | 4.14e-01 | 80.9% | 92.2% |
| 4349531 | 4252.1.1.3 ↗ | beta barrels › AttH-like › AttH-like › AttH-like › DA_C | 0.60 | 42.0 | 3.09e-01 | 75.0% | 83.8% |
| 3216210 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.58 | 39.0 | 4.27e-01 | 70.6% | 100.0% |
| 4959610 | 304.100.1.1 ↗ | a+b two layers › Alpha-beta plaits › PurS-like › PurS-like › PurS | 0.58 | 50.0 | 3.80e-01 | 100.0% | 71.8% |
| 3946107 | 821.1.1.3 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › T5orf172 | 0.57 | 47.0 | 4.38e-01 | 100.0% | 85.3% |
| 3782443 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.56 | 39.0 | 2.93e-01 | 72.1% | 29.7% |
| 5054705 | 304.7.1.0 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors | 0.56 | 45.0 | 4.30e-01 | 91.2% | 100.0% |
| 4014183 | 825.1.1.0 ↗ | beta complex topology › Aerolysin family of pore-forming toxins › Aerolysin family of pore-forming toxins › Aerolysin family of pore-forming toxins | 0.56 | 42.0 | 2.95e-01 | 83.8% | 55.4% |
| 3626327 | 4007.1.1.0 ↗ | a+b two layers › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins | 0.56 | 47.0 | 4.44e-01 | 98.5% | 97.6% |
| 4929272 | 304.22.1.0 ↗ | a+b two layers › Alpha-beta plaits › Urease metallochaperone UreE, C-terminal domain › Urease metallochaperone UreE, C-terminal domain | 0.55 | 46.0 | 4.38e-01 | 95.6% | 97.5% |
| 3583600 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.54 | 40.0 | 3.85e-01 | 85.3% | 68.8% |
| 4993535 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.54 | 37.0 | 3.54e-01 | 73.5% | 100.0% |
| 3392995 | 4007.1.1.0 ↗ | a+b two layers › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins | 0.53 | 46.0 | 4.32e-01 | 100.0% | 95.3% |
| 3416551 | 4007.1.1.0 ↗ | a+b two layers › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins | 0.52 | 46.0 | 4.37e-01 | 100.0% | 96.2% |
| 4051078 | 304.4.1.71 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › DUF4937 | 0.51 | 42.0 | 3.68e-01 | 97.1% | 93.9% |
| 4568770 | 304.56.1.2 ↗ | a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › CRISPR_Cas2 | 0.51 | 41.0 | 3.93e-01 | 94.1% | 96.5% |
| 4944359 | 304.56.1.0 ↗ | a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like | 0.51 | 41.0 | 3.94e-01 | 95.6% | 95.3% |