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rifoxyd1_full_scaffold_5_prodigal-single.1__X__X__00081
Bact-Virrifoxyd1_full_scaffold_5_prodigal-single.1__X__X__00081
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-54
Domain cluster:
representative
CATH (44)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1iz6A01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.70 | 58.0 | 5.37e-01 | 94.2% | 71.0% |
| 3a5zB01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.70 | 57.0 | 5.42e-01 | 100.0% | 76.2% |
| 3cpfA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.68 | 52.0 | 4.94e-01 | 94.2% | 69.2% |
| 4bb7B00 | 2.30.30.490 | Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain | 0.68 | 55.0 | 3.59e-01 | 90.4% | 48.7% |
| 1uebA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.68 | 56.0 | 5.29e-01 | 98.1% | 76.2% |
| 6s8zA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.68 | 54.0 | 5.17e-01 | 94.2% | 75.8% |
| 1khiA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.66 | 51.0 | 4.60e-01 | 94.2% | 60.0% |
| 3prbA02 | 2.40.10.330 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.66 | 48.0 | 5.10e-01 | 98.1% | 93.2% |
| 1p0zA00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.65 | 54.0 | 4.15e-01 | 98.1% | 42.0% |
| 3oyyA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.65 | 51.0 | 4.83e-01 | 96.2% | 72.7% |
| 2kcoA01 | 2.40.10.310 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.64 | 55.0 | 4.82e-01 | 94.2% | 67.1% |
| 3nvnA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.61 | 44.0 | 2.68e-01 | 80.8% | 40.2% |
| 2eyqA05 | 2.40.10.170 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.61 | 41.0 | 4.00e-01 | 73.1% | 62.7% |
| 2lt1A00 | 2.40.10.170 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.60 | 45.0 | 4.03e-01 | 84.6% | 57.3% |
| 1wosA04 | 2.40.30.110 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains | 0.60 | 45.0 | 3.94e-01 | 96.2% | 52.3% |
| 1qs1A01 | 3.90.176.10 | Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 | 0.59 | 46.0 | 3.22e-01 | 92.3% | 57.6% |
| 4h3sA02 | 2.40.240.10 | Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P | 0.58 | 45.0 | 3.72e-01 | 98.1% | 48.3% |
| 2xfmA00 | 2.170.260.10 | Mainly Beta › Beta Complex › paz domain › paz domain | 0.58 | 45.0 | 3.49e-01 | 86.5% | 74.2% |
| 2lqkA00 | 2.40.10.170 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.57 | 44.0 | 4.06e-01 | 86.5% | 65.7% |
| 2lc4A00 | 2.30.30.830 | Mainly Beta › Roll › SH3 type barrels. › | 0.57 | 49.0 | 3.89e-01 | 100.0% | 59.5% |
| 4cp6A00 | 3.80.10.10 | Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor | 0.57 | 41.0 | 2.43e-01 | 78.8% | 24.4% |
| 2ausC02 | 3.30.2350.10 | Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase | 0.56 | 41.0 | 2.86e-01 | 84.6% | 21.9% |
| 1xqbA01 | 2.40.30.70 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › YaeB-like | 0.56 | 44.0 | 3.67e-01 | 96.2% | 70.6% |
| 3n6rA04 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.55 | 43.0 | 3.98e-01 | 88.5% | 97.1% |
| 2kvoA01 | 2.40.30.220 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Photosystem II Psb28 | 0.55 | 44.0 | 3.73e-01 | 100.0% | 78.8% |
| 2bm0A02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.55 | 43.0 | 3.58e-01 | 92.3% | 69.9% |
| 4ge6A00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.55 | 44.0 | 2.74e-01 | 98.1% | 15.5% |
| 2apoA03 | 3.30.70.3190 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 39.0 | 3.43e-01 | 84.6% | 46.7% |
| 2mn5A00 | 3.30.30.140 | Alpha Beta › 2-Layer Sandwich › Defensin A-like › | 0.54 | 42.0 | 4.19e-01 | 94.2% | 98.2% |
| 2qggA01 | 2.40.30.60 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › RimM | 0.54 | 39.0 | 3.43e-01 | 86.5% | 63.4% |
| 4c4aA02 | 2.70.160.11 | Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 | 0.53 | 37.0 | 2.68e-01 | 78.8% | 92.5% |
| 2ijd101 | 2.40.10.120 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.53 | 46.0 | 3.22e-01 | 100.0% | 43.9% |
| 3sigA00 | 3.40.220.10 | Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 | 0.53 | 37.0 | 2.49e-01 | 80.8% | 58.1% |
| 1vavA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.53 | 40.0 | 2.76e-01 | 88.5% | 44.1% |
| 2iw3A05 | 2.40.50.990 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.52 | 40.0 | 3.26e-01 | 86.5% | 56.0% |
| 1xxmC01 | 3.30.1450.10 | Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › | 0.52 | 41.0 | 3.80e-01 | 92.3% | 89.2% |
| 6r77A02 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.52 | 40.0 | 2.93e-01 | 90.4% | 31.3% |
| 5h7jA02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.52 | 40.0 | 3.33e-01 | 92.3% | 62.0% |
| 3a7rA01 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.51 | 42.0 | 2.83e-01 | 100.0% | 70.2% |
| 1x51A01 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.51 | 42.0 | 3.20e-01 | 100.0% | 62.2% |
| 1g3pA02 | 3.90.450.1 | Alpha Beta › Alpha-Beta Complex › Minor Coat Protein; domain 2 › Minor Coat Protein; Domain 2 | 0.51 | 41.0 | 3.43e-01 | 98.1% | 49.0% |
| 2xgjA05 | 2.40.30.300 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.51 | 35.0 | 2.80e-01 | 76.9% | 87.7% |
| 4aghA00 | 2.30.31.10 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A | 0.50 | 41.0 | 3.71e-01 | 100.0% | 65.0% |
| 5c9dB00 | 2.40.70.10 | Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases | 0.50 | 39.0 | 3.19e-01 | 96.2% | 76.7% |
ECOD (59)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3590911 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.77 | 55.0 | 4.94e-01 | 88.5% | 55.7% |
| 5052257 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.76 | 51.0 | 4.85e-01 | 75.0% | 60.0% |
| 4863266 | 4.1.1.139 ↗ | beta barrels › SH3 › SH3 › SH3 › IF5A-like_N | 0.74 | 57.0 | 5.35e-01 | 94.2% | 67.7% |
| 4284764 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.72 | 58.0 | 5.42e-01 | 94.2% | 72.3% |
| 4213539 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.72 | 58.0 | 5.46e-01 | 92.3% | 72.3% |
| 3599172 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.71 | 57.0 | 5.33e-01 | 94.2% | 72.3% |
| 4069543 | 4.8.1.6 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot | 0.70 | 56.0 | 4.94e-01 | 86.5% | 60.0% |
| 3608236 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.70 | 58.0 | 5.43e-01 | 94.2% | 73.8% |
| 4028885 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.70 | 57.0 | 5.39e-01 | 96.2% | 73.8% |
| 4041586 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.70 | 58.0 | 5.41e-01 | 100.0% | 73.8% |
| 4051625 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.70 | 57.0 | 5.36e-01 | 100.0% | 73.8% |
| 4345080 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.70 | 55.0 | 5.16e-01 | 92.3% | 70.8% |
| 4419948 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.69 | 57.0 | 5.32e-01 | 94.2% | 73.8% |
| 4101580 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.69 | 55.0 | 5.18e-01 | 94.2% | 72.3% |
| 4038269 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.69 | 56.0 | 5.23e-01 | 94.2% | 73.8% |
| 4446791 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.69 | 56.0 | 5.23e-01 | 100.0% | 73.8% |
| 4201878 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.69 | 56.0 | 5.25e-01 | 100.0% | 73.8% |
| 3234134 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.69 | 50.0 | 3.12e-01 | 90.4% | 13.1% |
| 5042402 | 239.1.1.0 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like | 0.68 | 54.0 | 5.23e-01 | 90.4% | 91.7% |
| 4077367 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.68 | 56.0 | 5.30e-01 | 94.2% | 75.4% |
| 3624495 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.68 | 49.0 | 2.99e-01 | 86.5% | 12.2% |
| 4002526 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.67 | 52.0 | 3.17e-01 | 90.4% | 13.3% |
| 3265170 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.67 | 54.0 | 5.12e-01 | 94.2% | 73.8% |
| 3306779 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.67 | 55.0 | 5.16e-01 | 96.2% | 73.8% |
| 4146937 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.67 | 54.0 | 5.07e-01 | 100.0% | 73.8% |
| 4931072 | 4.1.1.139 ↗ | beta barrels › SH3 › SH3 › SH3 › IF5A-like_N | 0.67 | 54.0 | 4.97e-01 | 92.3% | 70.0% |
| 4946993 | 4.1.1.479 ↗ | beta barrels › SH3 › SH3 › SH3 › eIF-5a | 0.67 | 54.0 | 4.94e-01 | 92.3% | 70.0% |
| 3582034 | 206.1.1.72 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, Pkinase_fungal | 0.66 | 50.0 | 3.11e-01 | 90.4% | 13.4% |
| 3517415 | 4.1.1.287 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF5641 | 0.66 | 54.0 | 5.01e-01 | 90.4% | 73.8% |
| 3802388 | 239.1.1.0 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like | 0.66 | 57.0 | 4.95e-01 | 100.0% | 81.9% |
| 591 | 4.1.1.139 ↗ | beta barrels › SH3 › SH3 › SH3 › IF5A-like_N | 0.66 | 51.0 | 4.58e-01 | 94.2% | 59.2% |
| 4086925 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.66 | 52.0 | 4.95e-01 | 94.2% | 73.8% |
| 5057367 | 4.6.1.0 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain | 0.66 | 50.0 | 4.84e-01 | 84.6% | 73.3% |
| 3483489 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.66 | 53.0 | 4.81e-01 | 94.2% | 65.3% |
| 4956032 | 239.1.1.7 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Lhr_WH | 0.65 | 55.0 | 5.28e-01 | 94.2% | 81.7% |
| 5015989 | 239.1.1.7 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Lhr_WH | 0.65 | 55.0 | 5.45e-01 | 94.2% | 90.9% |
| 3213571 | 206.1.1.70 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, ABC1 | 0.65 | 48.0 | 2.95e-01 | 88.5% | 12.5% |
| 3643549 | 4.1.1.139 ↗ | beta barrels › SH3 › SH3 › SH3 › IF5A-like_N | 0.65 | 52.0 | 4.66e-01 | 94.2% | 61.3% |
| 4994372 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.65 | 50.0 | 3.89e-01 | 86.5% | 89.2% |
| 4950806 | 4.6.1.8 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › WH_Lhr | 0.64 | 54.0 | 5.30e-01 | 94.2% | 89.1% |
| 2674741 | 4.1.1.32 ↗ | beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID | 0.63 | 50.0 | 4.91e-01 | 94.2% | 81.8% |
| 3505711 | 4.1.1.287 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF5641 | 0.63 | 53.0 | 4.58e-01 | 98.1% | 70.6% |
| 4851967 | 4.1.1.32 ↗ | beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID | 0.62 | 45.0 | 4.30e-01 | 84.6% | 67.7% |
| 5032255 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.61 | 45.0 | 4.13e-01 | 80.8% | 64.3% |
| 4031786 | 1.1.13.20 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Prophage_tailD1 | 0.61 | 45.0 | 3.98e-01 | 86.5% | 98.8% |
| 4547406 | 4.1.1.32 ↗ | beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID | 0.60 | 49.0 | 4.20e-01 | 88.5% | 93.8% |
| 4883825 | 1.1.13.20 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Prophage_tailD1 | 0.60 | 47.0 | 4.12e-01 | 98.1% | 96.7% |
| 4033907 | 4.1.1.280 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF4176 | 0.59 | 43.0 | 3.59e-01 | 80.8% | 47.4% |
| 3595114 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.57 | 44.0 | 3.69e-01 | 92.3% | 76.2% |
| 4974179 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.55 | 44.0 | 3.59e-01 | 94.2% | 58.2% |
| 3637442 | 5.1.4.254 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_NOL10_N | 0.55 | 42.0 | 2.57e-01 | 86.5% | 21.6% |
| 1405153 | 387.1.5.14 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like › Defensin_5 | 0.54 | 42.0 | 4.17e-01 | 94.2% | 96.5% |
| 4988402 | 4.6.1.2 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC | 0.54 | 39.0 | 3.50e-01 | 80.8% | 91.3% |
| 4021608 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.53 | 35.0 | 3.10e-01 | 75.0% | 46.7% |
| 5066523 | 3124.1.1.1 ↗ | beta sandwiches › Nascent polypeptide-associated complex (NAC) dimerization domain › Nascent polypeptide-associated complex (NAC) dimerization domain › Nascent polypeptide-associated complex (NAC) dimerization domain › NAC | 0.52 | 36.0 | 3.69e-01 | 76.9% | 95.6% |
| 3502375 | 391.1.2.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related | 0.51 | 37.0 | 3.97e-01 | 86.5% | 91.1% |
| 3286341 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.51 | 37.0 | 2.93e-01 | 92.3% | 32.6% |
| 337170 | 2.19.1.1 ↗ | beta barrels › OB-fold › Putative membrane protein › Putative membrane protein › DUF3239 | 0.51 | 43.0 | 3.31e-01 | 100.0% | 65.9% |
| 3964293 | 207.2.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like | 0.51 | 39.0 | 2.70e-01 | 90.4% | 22.4% |