rifoxyd1_full_scaffold_5_prodigal-single.1XX__00086

Bact-Vir

rifoxyd1_full_scaffold_5_prodigal-single.1__X__X__00086

Identity

72.7 mean pLDDT

Singleton — not in a non-trivial cluster

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-83

PDB

Domain cluster: rep: SR-VP_0-2_scaffold_141_2071242_prodigal-single.1__X__X__00085__D3-80

CATH (6)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4do8A00	2.10.60.10	Mainly Beta › Ribbon › CD59 › CD59	0.63	37.0	4.06e-01	82.9%	71.2%
2mkcA00	3.30.70.330	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain	0.59	38.0	3.46e-01	100.0%	46.6%
6w6vE01	3.30.70.3250	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribonuclease P, Pop5 subunit	0.55	46.0	3.83e-01	95.1%	99.4%
7tuvA02	2.40.50.700	Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) ›	0.55	31.0	3.07e-01	95.1%	49.4%
6lsaC01	2.70.230.10	Mainly Beta › Distorted Sandwich › Glycoprotein D; Chain: A; ›	0.51	35.0	2.70e-01	100.0%	28.4%
1bteA00	2.10.60.10	Mainly Beta › Ribbon › CD59 › CD59	0.51	34.0	3.33e-01	81.7%	62.0%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3235447	821.1.1.8 ↗	a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › ANKLE2_3rd	0.65	50.0	4.87e-01	82.9%	81.1%
2083182	12.1.1.0 ↗	beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain	0.53	33.0	2.97e-01	100.0%	43.7%
3379956	2004.1.1.26 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin	0.51	43.0	3.15e-01	95.1%	73.6%