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rifoxyd1_full_scaffold_5_prodigal-single.1__X__X__00111
Bact-Virrifoxyd1_full_scaffold_5_prodigal-single.1__X__X__00111
Identity
- Kingdom:
- phage
Quality
91.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 39-115
Domain cluster:
representative
CATH (39)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2gu3A01 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.71 | 54.0 | 5.82e-01 | 100.0% | 96.9% |
| 8aimG01 | 3.10.450.20 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Bacteriophage PBS2, uracil-glycosylase inhibitor | 0.64 | 52.0 | 5.14e-01 | 88.3% | 90.1% |
| 3blzA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.64 | 55.0 | 4.80e-01 | 100.0% | 95.2% |
| 3fkaB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.64 | 56.0 | 4.90e-01 | 100.0% | 98.3% |
| 4r1kB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.64 | 55.0 | 4.65e-01 | 100.0% | 88.2% |
| 1jkgA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.63 | 54.0 | 4.57e-01 | 100.0% | 91.4% |
| 4hz9B00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.62 | 52.0 | 4.59e-01 | 97.4% | 97.6% |
| 2gu3A02 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.62 | 47.0 | 5.00e-01 | 94.8% | 100.0% |
| 1i72A00 | 3.60.90.10 | Alpha Beta › 4-Layer Sandwich › S-adenosylmethionine decarboxylase › S-adenosylmethionine decarboxylase | 0.61 | 48.0 | 3.36e-01 | 100.0% | 25.9% |
| 2xepB01 | 3.10.450.280 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.61 | 52.0 | 4.67e-01 | 100.0% | 85.1% |
| 7qrlA01 | 2.70.70.10 | Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) | 0.60 | 44.0 | 3.65e-01 | 76.6% | 81.5% |
| 1f49A05 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.60 | 52.0 | 3.56e-01 | 98.7% | 44.5% |
| 2h36X00 | 3.30.160.300 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.60 | 46.0 | 4.21e-01 | 85.7% | 82.4% |
| 3i6eA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.60 | 41.0 | 3.75e-01 | 71.4% | 96.1% |
| 2qgyB01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.59 | 41.0 | 3.45e-01 | 72.7% | 77.4% |
| 2imjD01 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.59 | 50.0 | 4.22e-01 | 100.0% | 81.7% |
| 3lygA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.58 | 49.0 | 4.37e-01 | 100.0% | 94.2% |
| 2a15A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.58 | 49.0 | 4.23e-01 | 100.0% | 91.0% |
| 3nctA00 | 3.40.50.11880 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Plasmid SOS inhibition protein | 0.58 | 45.0 | 3.74e-01 | 100.0% | 47.4% |
| 7ob9B01 | 3.90.1110.10 | Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 | 0.58 | 44.0 | 3.37e-01 | 100.0% | 33.9% |
| 3rcyB01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.57 | 39.0 | 3.29e-01 | 71.4% | 73.0% |
| 3nqzA02 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.57 | 50.0 | 4.88e-01 | 100.0% | 95.2% |
| 2g30A02 | 3.30.310.10 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein | 0.57 | 41.0 | 3.61e-01 | 100.0% | 50.9% |
| 7fisA01 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.56 | 48.0 | 3.33e-01 | 100.0% | 35.9% |
| 3it5G00 | 2.70.70.10 | Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) | 0.56 | 42.0 | 3.23e-01 | 80.5% | 65.6% |
| 4qa8A00 | 2.50.20.20 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › | 0.56 | 47.0 | 3.58e-01 | 100.0% | 87.6% |
| 1f9cA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.56 | 38.0 | 3.36e-01 | 71.4% | 83.6% |
| 3ozqA01 | 2.30.39.10 | Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 | 0.55 | 44.0 | 3.50e-01 | 89.6% | 91.5% |
| 1iyxA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.55 | 37.0 | 3.25e-01 | 71.4% | 95.2% |
| 3fcyA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.54 | 38.0 | 2.60e-01 | 74.0% | 29.3% |
| 3oblA00 | 2.40.128.450 | Mainly Beta › Beta Barrel › Lipocalin › | 0.54 | 44.0 | 3.76e-01 | 98.7% | 54.5% |
| 2yh9B00 | 3.30.1450.10 | Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › | 0.53 | 32.0 | 3.42e-01 | 100.0% | 69.1% |
| 7vd7A01 | 3.10.450.530 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Ribonuclease toxin, BrnT, of type II toxin-antitoxin system | 0.52 | 43.0 | 4.06e-01 | 90.9% | 89.1% |
| 3otlA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.52 | 44.0 | 3.62e-01 | 100.0% | 64.1% |
| 1ni9A01 | 3.30.540.10 | Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 | 0.51 | 44.0 | 3.62e-01 | 100.0% | 69.5% |
| 2z4hA01 | 2.40.128.300 | Mainly Beta › Beta Barrel › Lipocalin › NlpE, N-terminal domain | 0.51 | 39.0 | 3.88e-01 | 94.8% | 81.0% |
| 2kgyA00 | 3.30.505.20 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › | 0.51 | 43.0 | 4.13e-01 | 96.1% | 95.7% |
| 3lhnA00 | 2.40.128.640 | Mainly Beta › Beta Barrel › Lipocalin › | 0.50 | 41.0 | 3.80e-01 | 94.8% | 77.6% |
| 3gekA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.50 | 45.0 | 3.76e-01 | 98.7% | 62.6% |
ECOD (55)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3947188 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.73 | 65.0 | 5.90e-01 | 100.0% | 78.1% |
| 3923273 | 206.1.1.44 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › DUF1679 | 0.71 | 62.0 | 3.90e-01 | 98.7% | 37.0% |
| 3930684 | 206.1.1.44 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › DUF1679 | 0.69 | 59.0 | 3.70e-01 | 96.1% | 34.2% |
| 4348187 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.68 | 59.0 | 5.76e-01 | 100.0% | 89.4% |
| 3934844 | 206.1.1.44 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › DUF1679 | 0.66 | 58.0 | 3.70e-01 | 100.0% | 34.8% |
| 5045854 | 243.5.1.0 ↗ | a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region | 0.66 | 57.0 | 5.68e-01 | 98.7% | 95.0% |
| 4927943 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.65 | 54.0 | 5.58e-01 | 94.8% | 100.0% |
| 4927378 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.64 | 55.0 | 4.83e-01 | 98.7% | 98.4% |
| 4031480 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.64 | 54.0 | 5.20e-01 | 96.1% | 81.1% |
| 3492699 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.63 | 53.0 | 5.04e-01 | 97.4% | 88.4% |
| 3519971 | 220.1.1.32 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Sec3-PIP2_bind | 0.62 | 53.0 | 4.09e-01 | 100.0% | 41.7% |
| 5081827 | 206.1.1.9 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › RIO1 | 0.61 | 52.0 | 3.65e-01 | 98.7% | 49.8% |
| 4985490 | 331.10.2.1 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase › AdoMet_dc | 0.61 | 49.0 | 4.28e-01 | 94.8% | 56.1% |
| 135704 | 218.1.1.1 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N | 0.61 | 42.0 | 3.67e-01 | 71.4% | 84.6% |
| 3970883 | 222.1.1.25 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › ChapFlgA_N | 0.60 | 45.0 | 4.27e-01 | 79.2% | 88.9% |
| 3244845 | 5.1.4.137 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nbas_N | 0.60 | 53.0 | 3.16e-01 | 100.0% | 15.6% |
| 4994410 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.60 | 42.0 | 4.13e-01 | 74.0% | 85.9% |
| None | — | 0.59 | 52.0 | 3.28e-01 | 100.0% | 23.0% | |
| 4142096 | 5.1.4.321 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF30361 | 0.59 | 52.0 | 3.22e-01 | 100.0% | 21.1% |
| None | — | 0.59 | 52.0 | 3.23e-01 | 100.0% | 20.2% | |
| 2140345 | 218.1.1.1 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N | 0.59 | 40.0 | 3.63e-01 | 71.4% | 88.2% |
| 5002402 | 3153.1.1.0 ↗ | a+b two layers › PipX › PipX › PipX | 0.59 | 38.0 | 3.87e-01 | 80.5% | 66.7% |
| 3784777 | 220.1.1.32 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Sec3-PIP2_bind | 0.59 | 52.0 | 4.09e-01 | 100.0% | 57.6% |
| 3703649 | 292.2.1.0 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain | 0.59 | 41.0 | 4.14e-01 | 100.0% | 71.2% |
| 3783000 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.59 | 50.0 | 4.68e-01 | 94.8% | 77.9% |
| 4293623 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.59 | 51.0 | 3.16e-01 | 100.0% | 22.5% |
| 3707862 | 79.1.1.0 ↗ | beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain | 0.59 | 41.0 | 4.11e-01 | 100.0% | 71.2% |
| 5044451 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.58 | 51.0 | 5.06e-01 | 97.4% | 95.0% |
| 3185727 | 5.1.4.298 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_ELP1_1st, Beta-prop_ELP1_2nd | 0.58 | 51.0 | 3.40e-01 | 100.0% | 29.6% |
| 3401376 | 5.1.4.8 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH | 0.58 | 52.0 | 3.38e-01 | 100.0% | 25.1% |
| 5018327 | 325.1.6.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 | 0.58 | 46.0 | 3.55e-01 | 85.7% | 56.6% |
| 4968133 | 4312.1.1.1 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like › BrnT_toxin | 0.58 | 49.0 | 4.62e-01 | 93.5% | 89.2% |
| 3629857 | 5.1.4.4 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,DUF1899,WD40_4 | 0.58 | 51.0 | 3.20e-01 | 100.0% | 21.9% |
| 163477 | 218.1.1.1 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N | 0.57 | 39.0 | 3.50e-01 | 71.4% | 85.1% |
| 4014154 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.57 | 49.0 | 4.10e-01 | 100.0% | 77.2% |
| 3517016 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.57 | 49.0 | 3.30e-01 | 100.0% | 28.5% |
| 3714509 | 220.1.1.303 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PF26278 | 0.57 | 47.0 | 3.85e-01 | 97.4% | 47.7% |
| 3198929 | 331.4.1.3 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › AdenylateSensor | 0.57 | 44.0 | 3.73e-01 | 100.0% | 48.6% |
| 5034238 | 325.1.6.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 | 0.56 | 43.0 | 3.27e-01 | 81.8% | 55.0% |
| 4182863 | 2002.1.1.87 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Melibiase | 0.56 | 49.0 | 3.20e-01 | 100.0% | 100.0% |
| 3419526 | 5.1.5.146 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_AT5G49610-like | 0.56 | 48.0 | 3.20e-01 | 100.0% | 28.2% |
| 4888761 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.56 | 48.0 | 3.68e-01 | 100.0% | 45.3% |
| 1878373 | 1001.1.1.0 ↗ | a+b two layers › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 | 0.55 | 39.0 | 3.77e-01 | 74.0% | 72.4% |
| 5003610 | 3153.1.1.0 ↗ | a+b two layers › PipX › PipX › PipX | 0.55 | 42.0 | 4.03e-01 | 87.0% | 81.1% |
| 3616389 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.55 | 43.0 | 4.28e-01 | 84.4% | 86.3% |
| 3797648 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.55 | 43.0 | 4.19e-01 | 84.4% | 81.2% |
| 3287567 | 4312.1.1.0 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like | 0.53 | 44.0 | 4.19e-01 | 90.9% | 84.4% |
| 5050807 | 298.1.1.24 ↗ | a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 | 0.52 | 42.0 | 3.37e-01 | 94.8% | 42.9% |
| 4658045 | 325.1.6.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif | 0.52 | 36.0 | 2.75e-01 | 75.3% | 66.2% |
| 5066585 | 881.2.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › TM1622-like › TM1622-like | 0.51 | 40.0 | 3.52e-01 | 90.9% | 84.6% |
| 3177333 | 59.1.2.0 ↗ | beta complex topology › triple barrel › triple barrel › RNase H2 subunits B and C | 0.51 | 40.0 | 4.24e-01 | 94.8% | 98.6% |
| 3286246 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.51 | 44.0 | 4.06e-01 | 100.0% | 76.0% |
| 3281552 | 881.4.1.3 ↗ | a+b three layers › Mog1p/PsbP-like › C-terminal domain in sigma-E factor regulatory protein rseB › C-terminal domain in sigma-E factor regulatory protein rseB › DUF4245 | 0.51 | 44.0 | 3.67e-01 | 97.4% | 85.2% |
| 138255 | 9.1.1.6 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › NlpE | 0.50 | 42.0 | 3.79e-01 | 94.8% | 76.9% |
| 3645444 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.50 | 36.0 | 3.15e-01 | 76.6% | 98.3% |