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rifoxyd1_full_scaffold_5_prodigal-single.1__X__X__00112
Bact-Virrifoxyd1_full_scaffold_5_prodigal-single.1__X__X__00112
Identity
- Kingdom:
- phage
Quality
86.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-92
Domain cluster:
representative
CATH (34)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2xk0A00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.76 | 47.0 | 5.37e-01 | 90.1% | 82.6% |
| 3lx7A01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.76 | 37.0 | 5.04e-01 | 80.2% | 93.5% |
| 2cudA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.73 | 46.0 | 4.98e-01 | 82.4% | 74.7% |
| 2dmoA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.71 | 45.0 | 5.13e-01 | 82.4% | 85.3% |
| 2ekhA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.71 | 45.0 | 4.86e-01 | 83.5% | 73.8% |
| 2gfaB01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.71 | 45.0 | 5.30e-01 | 87.9% | 93.5% |
| 1udlA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.71 | 45.0 | 4.36e-01 | 82.4% | 59.2% |
| 2epdA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.69 | 46.0 | 5.04e-01 | 86.8% | 82.9% |
| 2jxbA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.68 | 42.0 | 4.33e-01 | 81.3% | 66.3% |
| 6o5cA02 | 2.30.30.90 | Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) | 0.67 | 50.0 | 5.44e-01 | 87.9% | 93.4% |
| 3m9qA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.67 | 49.0 | 5.43e-01 | 87.9% | 95.8% |
| 3udcA02 | 2.30.30.60 | Mainly Beta › Roll › SH3 type barrels. › | 0.67 | 36.0 | 4.66e-01 | 85.7% | 96.0% |
| 2l89A00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.66 | 48.0 | 4.51e-01 | 89.0% | 63.0% |
| 4o5vA03 | 2.30.30.90 | Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) | 0.66 | 48.0 | 5.20e-01 | 86.8% | 90.8% |
| 3vygD00 | 2.30.30.50 | Mainly Beta › Roll › SH3 type barrels. › | 0.66 | 55.0 | 4.97e-01 | 87.9% | 79.0% |
| 2k5fA01 | 2.30.30.90 | Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) | 0.66 | 48.0 | 5.02e-01 | 85.7% | 84.3% |
| 2k5iA01 | 2.30.30.90 | Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) | 0.65 | 49.0 | 5.07e-01 | 86.8% | 84.5% |
| 2k4yA00 | 2.30.30.90 | Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) | 0.65 | 48.0 | 4.99e-01 | 86.8% | 82.6% |
| 3hrsA02 | 2.30.30.90 | Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) | 0.65 | 48.0 | 5.19e-01 | 87.9% | 93.4% |
| 2kxcA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.64 | 42.0 | 4.82e-01 | 81.3% | 91.0% |
| 1v29B02 | 2.30.30.50 | Mainly Beta › Roll › SH3 type barrels. › | 0.63 | 53.0 | 5.20e-01 | 89.0% | 93.8% |
| 5zr6A02 | 2.30.30.90 | Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) | 0.63 | 47.0 | 5.12e-01 | 85.7% | 96.1% |
| 3e19B01 | 2.30.30.90 | Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) | 0.62 | 42.0 | 4.79e-01 | 81.3% | 98.4% |
| 1u1sA00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.60 | 42.0 | 4.74e-01 | 92.3% | 100.0% |
| 1zq1A01 | 2.30.30.520 | Mainly Beta › Roll › SH3 type barrels. › | 0.60 | 42.0 | 4.55e-01 | 89.0% | 88.3% |
| 4f7uG00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.59 | 41.0 | 4.65e-01 | 87.9% | 97.1% |
| 3npfA02 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.58 | 39.0 | 4.39e-01 | 80.2% | 90.0% |
| 3upuA03 | 2.30.30.780 | Mainly Beta › Roll › SH3 type barrels. › | 0.58 | 46.0 | 4.07e-01 | 84.6% | 98.5% |
| 6bioA01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.58 | 36.0 | 4.37e-01 | 76.9% | 100.0% |
| 1wfwA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.58 | 39.0 | 4.23e-01 | 83.5% | 85.1% |
| 2evrA01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.57 | 40.0 | 4.38e-01 | 83.5% | 89.2% |
| 2vgeA00 | 1.25.40.20 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain | 0.57 | 47.0 | 3.53e-01 | 86.8% | 43.5% |
| 1i1jB00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.54 | 46.0 | 4.46e-01 | 94.5% | 83.7% |
| 1pnjA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.52 | 40.0 | 4.18e-01 | 82.4% | 87.2% |
ECOD (59)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5074039 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.75 | 52.0 | 5.70e-01 | 86.8% | 86.7% |
| 5067227 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.74 | 52.0 | 5.46e-01 | 87.9% | 79.5% |
| 5064571 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.73 | 50.0 | 5.07e-01 | 85.7% | 71.1% |
| 3217113 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.73 | 43.0 | 5.10e-01 | 79.1% | 84.6% |
| 3490689 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.70 | 49.0 | 5.56e-01 | 89.0% | 94.3% |
| 3542245 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.70 | 44.0 | 5.01e-01 | 83.5% | 84.3% |
| 5042313 | 4.1.1.40 ↗ | beta barrels › SH3 › SH3 › SH3 › FeoA | 0.69 | 50.0 | 5.45e-01 | 86.8% | 92.0% |
| 4930563 | 4.1.1.40 ↗ | beta barrels › SH3 › SH3 › SH3 › FeoA | 0.69 | 48.0 | 5.39e-01 | 85.7% | 94.3% |
| 4939495 | 4.1.1.40 ↗ | beta barrels › SH3 › SH3 › SH3 › FeoA | 0.68 | 50.0 | 5.53e-01 | 84.6% | 95.9% |
| 4030943 | 4.1.1.40 ↗ | beta barrels › SH3 › SH3 › SH3 › FeoA | 0.68 | 50.0 | 5.32e-01 | 85.7% | 88.6% |
| 1793524 | 4.1.1.14 ↗ | beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e | 0.67 | 50.0 | 4.84e-01 | 87.9% | 70.7% |
| 5008645 | 4.1.1.40 ↗ | beta barrels › SH3 › SH3 › SH3 › FeoA | 0.67 | 49.0 | 5.32e-01 | 86.8% | 92.0% |
| 4012002 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.67 | 48.0 | 5.37e-01 | 86.8% | 95.7% |
| 3251170 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.67 | 44.0 | 5.05e-01 | 82.4% | 88.6% |
| 5001589 | 4.1.1.14 ↗ | beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e | 0.67 | 54.0 | 5.21e-01 | 89.0% | 77.0% |
| 1144815 | 4.1.1.103 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_12 | 0.67 | 51.0 | 5.39e-01 | 87.9% | 91.3% |
| 3386779 | 4.1.1.40 ↗ | beta barrels › SH3 › SH3 › SH3 › FeoA | 0.67 | 49.0 | 5.41e-01 | 86.8% | 95.9% |
| 145843 | 4.1.1.12 ↗ | beta barrels › SH3 › SH3 › SH3 › PWWP | 0.66 | 48.0 | 4.51e-01 | 89.0% | 63.0% |
| 313834 | 4.1.1.27 ↗ | beta barrels › SH3 › SH3 › SH3 › NHase_beta_C | 0.66 | 55.0 | 4.95e-01 | 87.9% | 78.3% |
| 1174965 | 4.1.1.40 ↗ | beta barrels › SH3 › SH3 › SH3 › FeoA | 0.65 | 49.0 | 5.24e-01 | 86.8% | 92.2% |
| 4952478 | 4.1.1.40 ↗ | beta barrels › SH3 › SH3 › SH3 › FeoA | 0.65 | 47.0 | 5.14e-01 | 85.7% | 92.0% |
| 1678740 | 4.1.1.40 ↗ | beta barrels › SH3 › SH3 › SH3 › FeoA | 0.65 | 49.0 | 5.21e-01 | 87.9% | 91.0% |
| 4019215 | 4.1.1.303 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus | 0.64 | 46.0 | 5.12e-01 | 89.0% | 95.7% |
| 4549698 | 4.8.1.10 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like | 0.64 | 47.0 | 4.64e-01 | 89.0% | 72.6% |
| 3253768 | 4.1.1.308 ↗ | beta barrels › SH3 › SH3 › SH3 › PF31073 | 0.63 | 44.0 | 4.99e-01 | 86.8% | 94.3% |
| 4550532 | 4.1.1.58 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_3 | 0.62 | 43.0 | 4.36e-01 | 81.3% | 72.2% |
| 3598651 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.62 | 51.0 | 3.47e-01 | 90.1% | 37.6% |
| 3461921 | 4.1.1.118 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_15 | 0.61 | 51.0 | 4.98e-01 | 89.0% | 94.0% |
| 3586662 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.61 | 51.0 | 4.66e-01 | 90.1% | 90.8% |
| 3268923 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.61 | 43.0 | 4.09e-01 | 86.8% | 62.9% |
| 3253267 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.61 | 44.0 | 4.61e-01 | 87.9% | 81.2% |
| 3253266 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.61 | 46.0 | 4.40e-01 | 87.9% | 68.6% |
| 4658938 | 4.1.1.96 ↗ | beta barrels › SH3 › SH3 › SH3 › Hfq | 0.60 | 43.0 | 4.34e-01 | 92.3% | 74.4% |
| 4123180 | 4.1.1.96 ↗ | beta barrels › SH3 › SH3 › SH3 › Hfq | 0.60 | 43.0 | 4.69e-01 | 92.3% | 90.7% |
| 3700747 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.60 | 46.0 | 4.71e-01 | 83.5% | 96.7% |
| 3991065 | 4.1.1.334 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1, SH3_2 | 0.60 | 46.0 | 4.93e-01 | 82.4% | 92.5% |
| 3492018 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.59 | 44.0 | 4.16e-01 | 89.0% | 66.7% |
| 3879216 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.59 | 43.0 | 4.73e-01 | 79.1% | 92.0% |
| 4021478 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.59 | 45.0 | 4.71e-01 | 91.2% | 87.1% |
| 3869065 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.58 | 42.0 | 4.14e-01 | 82.4% | 69.0% |
| 3631165 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.58 | 45.0 | 4.63e-01 | 89.0% | 87.1% |
| 3170649 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.58 | 48.0 | 4.98e-01 | 87.9% | 98.8% |
| 3866907 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.57 | 46.0 | 4.78e-01 | 86.8% | 92.9% |
| 3667393 | 4.11.1.2 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 | 0.57 | 47.0 | 3.78e-01 | 86.8% | 61.8% |
| 3473981 | 4.1.1.12 ↗ | beta barrels › SH3 › SH3 › SH3 › PWWP | 0.57 | 47.0 | 4.25e-01 | 89.0% | 73.6% |
| 3612977 | 219.1.1.4 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C2 | 0.57 | 47.0 | 3.12e-01 | 89.0% | 32.5% |
| 3273925 | 4.1.1.85 ↗ | beta barrels › SH3 › SH3 › SH3 › MTR4_beta-barrel | 0.57 | 46.0 | 4.16e-01 | 86.8% | 75.2% |
| 3770804 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.57 | 46.0 | 4.71e-01 | 86.8% | 92.9% |
| 3612063 | 219.1.1.4 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C2 | 0.57 | 46.0 | 3.18e-01 | 89.0% | 30.3% |
| 3496126 | 4.25.1.0 ↗ | beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain | 0.57 | 47.0 | 4.79e-01 | 89.0% | 95.5% |
| 3422852 | 4.1.1.85 ↗ | beta barrels › SH3 › SH3 › SH3 › MTR4_beta-barrel | 0.57 | 45.0 | 4.01e-01 | 83.5% | 75.2% |
| 4020992 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.55 | 45.0 | 3.05e-01 | 90.1% | 31.3% |
| 3371134 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.55 | 46.0 | 4.17e-01 | 90.1% | 91.7% |
| 3830656 | 4.1.1.158 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF3444 | 0.54 | 44.0 | 4.00e-01 | 86.8% | 71.7% |
| 5002116 | 4.1.1.403 ↗ | beta barrels › SH3 › SH3 › SH3 › UPF0179 | 0.53 | 37.0 | 4.16e-01 | 71.4% | 94.2% |
| 3842362 | 1.1.5.76 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › CABIT | 0.53 | 43.0 | 4.25e-01 | 87.9% | 88.4% |
| 3995388 | 4.1.1.34 ↗ | beta barrels › SH3 › SH3 › SH3 › MBT | 0.52 | 41.0 | 3.75e-01 | 87.9% | 63.3% |
| 3252837 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.52 | 36.0 | 3.73e-01 | 70.3% | 97.6% |
| 5071546 | 4.11.1.0 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase | 0.51 | 38.0 | 3.37e-01 | 89.0% | 53.3% |
D2
high
residues 103-165
Domain cluster:
rep: LacPavin_0818_WC55_scaffold_0-10091_curated_closed_complete_start-adj_prodigal-single.1__X__X__00655__D96-147
CATH (60)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3kbgA03 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.77 | 57.0 | 5.97e-01 | 92.1% | 87.5% |
| 2xk0A00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.77 | 55.0 | 5.36e-01 | 88.9% | 68.1% |
| 1dj7B00 | 2.30.30.50 | Mainly Beta › Roll › SH3 type barrels. › | 0.77 | 62.0 | 5.86e-01 | 85.7% | 94.5% |
| 2v1rA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.76 | 60.0 | 5.95e-01 | 85.7% | 92.5% |
| 1jb0E00 | 2.30.30.50 | Mainly Beta › Roll › SH3 type barrels. › | 0.75 | 62.0 | 5.98e-01 | 87.3% | 94.2% |
| 2ct4A00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.75 | 62.0 | 6.01e-01 | 88.9% | 84.3% |
| 5kcoA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.75 | 53.0 | 5.48e-01 | 82.5% | 79.7% |
| 1jegA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.74 | 61.0 | 6.28e-01 | 88.9% | 96.7% |
| 6az1E03 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.74 | 57.0 | 5.53e-01 | 90.5% | 73.6% |
| 2digA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.74 | 55.0 | 5.40e-01 | 88.9% | 73.5% |
| 2eqjA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.74 | 54.0 | 5.37e-01 | 88.9% | 74.2% |
| 7z0kB01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.73 | 62.0 | 6.21e-01 | 92.1% | 98.4% |
| 3mp6A05 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.72 | 55.0 | 5.52e-01 | 88.9% | 81.0% |
| 2vknA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.72 | 62.0 | 6.10e-01 | 93.7% | 93.9% |
| 2ldmA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.72 | 50.0 | 5.30e-01 | 85.7% | 86.8% |
| 2gfaB01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.71 | 57.0 | 5.77e-01 | 88.9% | 87.1% |
| 5ygbA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.71 | 57.0 | 5.29e-01 | 87.3% | 68.8% |
| 3npfB01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.71 | 60.0 | 5.90e-01 | 90.5% | 97.0% |
| 1s1nA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.71 | 58.0 | 5.97e-01 | 88.9% | 96.7% |
| 3oymA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.71 | 55.0 | 5.31e-01 | 85.7% | 74.3% |
| 3pmiA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.71 | 53.0 | 5.27e-01 | 85.7% | 76.9% |
| 1rvjH02 | 3.90.50.10 | Alpha Beta › Alpha-Beta Complex › Photosynthetic Reaction Center; Chain H, domain 2 › Photosynthetic Reaction Center, subunit H, domain 2 | 0.71 | 54.0 | 4.23e-01 | 88.9% | 39.4% |
| 7oc3A01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.70 | 57.0 | 4.98e-01 | 87.3% | 65.2% |
| 1m4zA01 | 2.30.30.490 | Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain | 0.70 | 58.0 | 4.14e-01 | 93.7% | 73.5% |
| 2fhdA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.70 | 55.0 | 5.63e-01 | 87.3% | 87.1% |
| 4iupA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.70 | 57.0 | 5.48e-01 | 88.9% | 83.3% |
| 2lccA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.70 | 56.0 | 5.28e-01 | 87.3% | 73.7% |
| 2budA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.69 | 54.0 | 4.78e-01 | 85.7% | 59.8% |
| 2akkA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.68 | 54.0 | 5.20e-01 | 88.9% | 78.4% |
| 3npfA02 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.67 | 52.0 | 5.05e-01 | 85.7% | 88.6% |
| 5z8lA01 | 2.30.30.490 | Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain | 0.67 | 54.0 | 4.39e-01 | 88.9% | 61.3% |
| 1whlA00 | 2.30.30.190 | Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain | 0.67 | 55.0 | 4.74e-01 | 88.9% | 83.2% |
| 4p5nA00 | 2.30.30.1060 | Mainly Beta › Roll › SH3 type barrels. › | 0.66 | 54.0 | 5.16e-01 | 88.9% | 79.7% |
| 7cceA01 | 2.30.30.490 | Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain | 0.66 | 55.0 | 4.18e-01 | 92.1% | 87.4% |
| 7xpkA01 | 2.30.30.490 | Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain | 0.66 | 54.0 | 4.14e-01 | 90.5% | 54.5% |
| 3urgA02 | 2.30.30.530 | Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain | 0.65 | 56.0 | 5.66e-01 | 96.8% | 95.2% |
| 1w4sA00 | 2.30.30.490 | Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain | 0.65 | 55.0 | 4.26e-01 | 96.8% | 84.2% |
| 2ra2B00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.63 | 45.0 | 4.70e-01 | 92.1% | 86.2% |
| 1ssfA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.63 | 45.0 | 4.79e-01 | 88.9% | 89.1% |
| 1x6oA02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.63 | 48.0 | 4.47e-01 | 82.5% | 98.7% |
| 2k57A00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.62 | 45.0 | 4.69e-01 | 90.5% | 89.1% |
| 1zq1A01 | 2.30.30.520 | Mainly Beta › Roll › SH3 type barrels. › | 0.61 | 48.0 | 4.64e-01 | 98.4% | 76.6% |
| 1nr4C00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.60 | 45.0 | 4.48e-01 | 81.0% | 83.3% |
| 3q9tA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.58 | 49.0 | 3.36e-01 | 100.0% | 71.0% |
| 3vmaA03 | 3.30.2060.10 | Alpha Beta › 2-Layer Sandwich › Penicillin-binding protein 1b fold › Penicillin-binding protein 1b domain | 0.56 | 38.0 | 3.48e-01 | 85.7% | 51.1% |
| 3c6kA02 | 2.30.140.10 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain | 0.56 | 40.0 | 4.19e-01 | 81.0% | 87.5% |
| 1mzpA01 | 3.30.190.20 | Alpha Beta › 2-Layer Sandwich › Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase › Ribosomal protein L1/L10, rRNA-binding domain | 0.56 | 39.0 | 3.12e-01 | 73.0% | 97.6% |
| 1upqA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.55 | 46.0 | 3.92e-01 | 95.2% | 79.4% |
| 1b25A02 | 1.10.569.10 | Mainly Alpha › Orthogonal Bundle › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A; domain 2 › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A, domain 2 | 0.55 | 40.0 | 2.94e-01 | 77.8% | 39.3% |
| 5c0pA00 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.54 | 46.0 | 3.06e-01 | 100.0% | 86.3% |
| 3o4fC01 | 2.30.140.10 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain | 0.54 | 38.0 | 4.10e-01 | 81.0% | 94.1% |
| 1ugiD00 | 3.10.450.20 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Bacteriophage PBS2, uracil-glycosylase inhibitor | 0.54 | 38.0 | 3.63e-01 | 79.4% | 72.0% |
| 4mi7A00 | 3.90.70.170 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.53 | 46.0 | 3.79e-01 | 100.0% | 53.2% |
| 1tsjA00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.53 | 33.0 | 2.73e-01 | 71.4% | 33.3% |
| 1inlC02 | 2.30.140.10 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain | 0.52 | 38.0 | 3.82e-01 | 81.0% | 78.1% |
| 2cmgA01 | 2.30.140.10 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain | 0.52 | 37.0 | 3.91e-01 | 77.8% | 92.2% |
| 5j60B02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.52 | 45.0 | 3.67e-01 | 96.8% | 71.7% |
| 2e5wA01 | 2.30.140.10 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain | 0.52 | 37.0 | 3.88e-01 | 81.0% | 87.5% |
| 1iy9A02 | 2.30.140.10 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain | 0.52 | 36.0 | 3.84e-01 | 81.0% | 94.2% |
| 2ciuA00 | 3.10.450.320 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Mitochondrial import inner membrane translocase subunit Tim21 | 0.50 | 34.0 | 2.86e-01 | 71.4% | 84.6% |
ECOD (72)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4995901 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.83 | 60.0 | 6.35e-01 | 96.8% | 85.5% |
| 3370389 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.79 | 64.0 | 6.37e-01 | 87.3% | 90.8% |
| 4093354 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.78 | 64.0 | 6.16e-01 | 88.9% | 92.9% |
| 3898952 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.77 | 64.0 | 5.98e-01 | 88.9% | 78.7% |
| 3390253 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.77 | 62.0 | 5.84e-01 | 87.3% | 78.7% |
| 3586469 | 4.1.1.287 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF5641 | 0.76 | 63.0 | 5.64e-01 | 90.5% | 65.9% |
| 5073368 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.75 | 60.0 | 5.85e-01 | 90.5% | 78.6% |
| 3487936 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.74 | 60.0 | 5.83e-01 | 87.3% | 81.4% |
| 3485745 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.74 | 61.0 | 6.24e-01 | 88.9% | 98.3% |
| 3237640 | 4.1.1.287 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF5641 | 0.73 | 64.0 | 5.25e-01 | 96.8% | 54.5% |
| 3730229 | 4.1.1.102 ↗ | beta barrels › SH3 › SH3 › SH3 › Tudor_3 | 0.73 | 58.0 | 5.43e-01 | 87.3% | 70.7% |
| 5043533 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.73 | 60.0 | 6.05e-01 | 88.9% | 90.6% |
| 3541996 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.73 | 60.0 | 4.18e-01 | 88.9% | 30.0% |
| 5052257 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.73 | 53.0 | 5.41e-01 | 87.3% | 80.0% |
| 3494765 | 214.1.1.0 ↗ | a+b two layers › SH2 › SH2 › SH2 | 0.72 | 59.0 | 3.99e-01 | 88.9% | 26.4% |
| 3165077 | 4.1.1.58 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_3 | 0.72 | 57.0 | 5.49e-01 | 84.1% | 88.6% |
| 3767452 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.72 | 55.0 | 4.58e-01 | 82.5% | 84.5% |
| 3936225 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.72 | 59.0 | 5.68e-01 | 88.9% | 85.7% |
| 3475510 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.71 | 58.0 | 5.15e-01 | 88.9% | 87.8% |
| 3675120 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.71 | 58.0 | 5.20e-01 | 87.3% | 77.6% |
| 3739064 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.71 | 58.0 | 5.77e-01 | 88.9% | 89.2% |
| 3559960 | 2006.1.6.66 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › DUF4537 | 0.70 | 58.0 | 5.60e-01 | 88.9% | 81.4% |
| 3415831 | 4.25.1.2 ↗ | beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain › BRWD_AD | 0.70 | 57.0 | 4.60e-01 | 88.9% | 78.3% |
| 3587555 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.70 | 58.0 | 5.66e-01 | 90.5% | 91.4% |
| 3926120 | 4.1.1.169 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF4819 | 0.70 | 57.0 | 4.28e-01 | 87.3% | 37.9% |
| 3742938 | 4.1.1.102 ↗ | beta barrels › SH3 › SH3 › SH3 › Tudor_3 | 0.70 | 54.0 | 5.36e-01 | 84.1% | 80.0% |
| 3625963 | 4.8.1.6 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot | 0.70 | 57.0 | 4.96e-01 | 88.9% | 60.0% |
| 147797 | 4.8.1.6 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot | 0.70 | 56.0 | 5.51e-01 | 87.3% | 82.4% |
| 3501337 | 4.1.1.169 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF4819 | 0.69 | 56.0 | 5.18e-01 | 87.3% | 85.0% |
| 3781383 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.69 | 58.0 | 5.13e-01 | 93.7% | 64.4% |
| 3025579 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.69 | 55.0 | 5.61e-01 | 87.3% | 100.0% |
| 3500084 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.68 | 59.0 | 5.77e-01 | 96.8% | 95.7% |
| None | — | 0.68 | 55.0 | 4.05e-01 | 88.9% | 57.6% | |
| 3510024 | 4.1.1.20 ↗ | beta barrels › SH3 › SH3 › SH3 › BAH | 0.68 | 55.0 | 4.60e-01 | 88.9% | 78.2% |
| 3926672 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.68 | 56.0 | 5.54e-01 | 88.9% | 89.2% |
| 4427477 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.67 | 54.0 | 4.70e-01 | 87.3% | 57.9% |
| 4377781 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.67 | 55.0 | 5.11e-01 | 92.1% | 77.5% |
| 4132516 | 4.1.1.253 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF4537 | 0.66 | 54.0 | 4.99e-01 | 88.9% | 73.8% |
| 3831409 | 4.1.1.158 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF3444 | 0.66 | 55.0 | 4.70e-01 | 90.5% | 75.0% |
| 4975018 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.65 | 53.0 | 3.82e-01 | 92.1% | 93.3% |
| 3563220 | 4.1.1.220 ↗ | beta barrels › SH3 › SH3 › SH3 › BAHCC1-like_Tudor | 0.64 | 53.0 | 4.91e-01 | 90.5% | 71.2% |
| 3433053 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.64 | 52.0 | 4.81e-01 | 88.9% | 70.0% |
| 4332591 | 2.1.1.7 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 | 0.63 | 47.0 | 4.33e-01 | 81.0% | 68.2% |
| 3687350 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.62 | 46.0 | 4.84e-01 | 85.7% | 90.9% |
| 3611557 | 2003.1.2.29 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › NAD_binding_8 | 0.62 | 55.0 | 3.17e-01 | 100.0% | 83.2% |
| 4964869 | 2003.1.2.22 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › GMC_oxred_C | 0.61 | 54.0 | 3.17e-01 | 100.0% | 87.1% |
| 4024737 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.61 | 44.0 | 4.84e-01 | 93.7% | 98.0% |
| 4034246 | 2003.1.2.30 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_3 | 0.60 | 52.0 | 4.10e-01 | 96.8% | 91.9% |
| 3285647 | 2003.1.2.120 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_oxidored, NAD_binding_8 | 0.60 | 52.0 | 3.11e-01 | 100.0% | 62.2% |
| 4990487 | 4.6.1.0 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain | 0.59 | 45.0 | 4.43e-01 | 90.5% | 77.1% |
| 3595668 | 2003.1.2.7 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_2 | 0.59 | 47.0 | 3.31e-01 | 92.1% | 47.6% |
| 3694881 | 244.1.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C | 0.59 | 50.0 | 3.23e-01 | 100.0% | 47.4% |
| 5062756 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.58 | 42.0 | 4.66e-01 | 77.8% | 98.0% |
| 3281250 | 2003.1.2.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.57 | 48.0 | 3.14e-01 | 100.0% | 49.8% |
| 4929001 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.56 | 46.0 | 4.56e-01 | 90.5% | 90.8% |
| 3959903 | 243.18.1.1 ↗ | a+b two layers › Cystatin-like › Maltokinase N-terminal domain › Maltokinase N-terminal domain › Mak_N_cap | 0.55 | 40.0 | 2.97e-01 | 82.5% | 36.6% |
| 3243980 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.54 | 39.0 | 2.58e-01 | 84.1% | 24.0% |
| 4243071 | 3699.1.1.0 ↗ | beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain | 0.53 | 38.0 | 4.02e-01 | 81.0% | 89.1% |
| 3987332 | 3699.1.1.1 ↗ | beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N | 0.53 | 37.0 | 3.93e-01 | 79.4% | 89.1% |
| 5041849 | 3699.1.1.1 ↗ | beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N | 0.53 | 37.0 | 3.94e-01 | 81.0% | 89.1% |
| 1030876 | 3699.1.1.1 ↗ | beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N | 0.52 | 38.0 | 3.71e-01 | 81.0% | 71.4% |
| 4039507 | 3699.1.1.1 ↗ | beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N | 0.52 | 38.0 | 3.96e-01 | 81.0% | 90.9% |
| 2897014 | 3699.1.1.1 ↗ | beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N | 0.52 | 37.0 | 3.82e-01 | 81.0% | 81.7% |
| 3959005 | 2003.1.2.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.52 | 45.0 | 2.90e-01 | 100.0% | 95.5% |
| 5013328 | 3699.1.1.1 ↗ | beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N | 0.52 | 38.0 | 3.93e-01 | 81.0% | 86.7% |
| 4163458 | 3699.1.1.1 ↗ | beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N | 0.52 | 37.0 | 3.85e-01 | 81.0% | 89.1% |
| 1279189 | 3699.1.1.1 ↗ | beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N | 0.52 | 36.0 | 3.81e-01 | 77.8% | 87.3% |
| 4971071 | 3699.1.1.1 ↗ | beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N | 0.51 | 37.0 | 3.85e-01 | 81.0% | 89.1% |
| 4671845 | 3699.1.1.1 ↗ | beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N | 0.51 | 36.0 | 3.60e-01 | 81.0% | 75.4% |
| 4407054 | 3699.1.1.1 ↗ | beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N | 0.51 | 36.0 | 3.72e-01 | 81.0% | 83.3% |
| 4114201 | 3699.1.1.1 ↗ | beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N | 0.50 | 36.0 | 3.67e-01 | 81.0% | 76.9% |
| 1164000 | 11.1.1.335 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › GlgB_N | 0.50 | 37.0 | 3.11e-01 | 79.4% | 53.7% |
D3
high
residues 175-266
Domain cluster:
representative
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1y10B02 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.67 | 34.0 | 2.73e-01 | 97.8% | 24.6% |
| 1s12A00 | 3.30.70.1490 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp | 0.66 | 40.0 | 3.97e-01 | 98.9% | 58.5% |
| 1vx7H01 | 3.90.930.12 | Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 | 0.62 | 34.0 | 3.54e-01 | 100.0% | 56.5% |
| 1j4wA01 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.61 | 33.0 | 3.64e-01 | 94.6% | 64.9% |
| 1vi7A02 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 31.0 | 3.41e-01 | 94.6% | 63.4% |
| 1vdhA01 | 3.30.70.1030 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Apc35880; domain 1 | 0.58 | 36.0 | 3.31e-01 | 95.7% | 47.1% |
| 5suhB01 | 3.30.70.1710 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › BMC (bacterial microcompartment) domain | 0.57 | 35.0 | 3.46e-01 | 71.7% | 56.6% |
| 4pxdA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 39.0 | 3.63e-01 | 98.9% | 58.3% |
| 3n5fA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 37.0 | 3.45e-01 | 100.0% | 55.3% |
| 1cc8A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 28.0 | 3.11e-01 | 92.4% | 58.3% |
| 2cphA01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.55 | 33.0 | 3.49e-01 | 94.6% | 68.4% |
| 2lxiA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.55 | 32.0 | 3.27e-01 | 94.6% | 58.2% |
| 2wbmA03 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 29.0 | 3.23e-01 | 93.5% | 64.3% |
| 3e8oB00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 33.0 | 3.29e-01 | 98.9% | 55.0% |
| 1r53A00 | 3.60.150.10 | Alpha Beta › 4-Layer Sandwich › Chorismate synthase, AroC fold › Chorismate synthase AroC | 0.54 | 44.0 | 3.17e-01 | 91.3% | 61.3% |
| 2uvaG03 | 3.30.70.3320 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 32.0 | 3.11e-01 | 100.0% | 51.9% |
| 5yppA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.52 | 30.0 | 3.04e-01 | 94.6% | 55.6% |
| 1hskA01 | 3.30.465.10 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › | 0.52 | 40.0 | 3.69e-01 | 84.8% | 96.1% |
| 1y5oA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.52 | 46.0 | 4.30e-01 | 100.0% | 98.3% |
| 2ldyA01 | 3.30.70.1820 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › L1 transposable element, RRM domain | 0.51 | 33.0 | 3.24e-01 | 98.9% | 60.2% |
| 2gffA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 31.0 | 3.11e-01 | 97.8% | 56.2% |
| 1q1lA00 | 3.60.150.10 | Alpha Beta › 4-Layer Sandwich › Chorismate synthase, AroC fold › Chorismate synthase AroC | 0.50 | 42.0 | 2.90e-01 | 92.4% | 56.5% |
| 1q67A01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.50 | 42.0 | 3.68e-01 | 92.4% | 90.7% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5027042 | 304.19.1.1 ↗ | a+b two layers › Alpha-beta plaits › eIF-2-alpha, C-terminal domain › eIF-2-alpha, C-terminal domain › EIF_2_alpha | 0.68 | 37.0 | 3.84e-01 | 98.9% | 56.8% |
| 5038693 | 213.1.1.17 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › DUF1122 | 0.63 | 52.0 | 4.06e-01 | 90.2% | 65.0% |
| 3816355 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.62 | 38.0 | 3.83e-01 | 100.0% | 60.2% |
| 3798239 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.60 | 34.0 | 3.54e-01 | 94.6% | 60.0% |
| 3536548 | 327.11.2.25 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1+FXMRP1_C_core | 0.58 | 40.0 | 3.89e-01 | 98.9% | 65.0% |
| 3828057 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.58 | 34.0 | 3.50e-01 | 97.8% | 60.0% |
| 4151399 | 304.8.1.5 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NIL | 0.56 | 32.0 | 3.40e-01 | 91.3% | 62.5% |
| 3211626 | 304.162.1.2 ↗ | a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain › FLAD1_M | 0.55 | 32.0 | 3.37e-01 | 95.7% | 61.2% |
| 4931230 | 304.114.1.0 ↗ | a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain | 0.55 | 32.0 | 3.27e-01 | 94.6% | 56.7% |
| 4618631 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.55 | 32.0 | 3.32e-01 | 94.6% | 60.0% |
| 3398626 | 304.8.1.54 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_13 | 0.55 | 30.0 | 3.04e-01 | 94.6% | 51.1% |
| 3564603 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.53 | 35.0 | 3.53e-01 | 94.6% | 65.3% |
| 3924303 | 327.11.2.22 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_BICC1_1st | 0.53 | 31.0 | 3.02e-01 | 94.6% | 51.0% |
| 5027029 | 325.1.1.7 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › CO dehydrogenase molybdoprotein N-domain-like › PurT_C | 0.52 | 29.0 | 3.24e-01 | 93.5% | 68.0% |
| 5051958 | 2003.1.5.79 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_23 | 0.52 | 36.0 | 3.01e-01 | 73.9% | 100.0% |
| 3176550 | 304.9.1.74 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › Nab6_mRNP_bdg | 0.52 | 42.0 | 3.39e-01 | 89.1% | 94.4% |
| 3692944 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.51 | 39.0 | 3.45e-01 | 82.6% | 86.4% |
| 4929350 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.51 | 31.0 | 3.28e-01 | 92.4% | 67.5% |
| 3603222 | 304.5.1.0 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like | 0.51 | 31.0 | 3.19e-01 | 95.7% | 61.1% |
| 4020541 | 601.23.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_III | 0.50 | 45.0 | 3.06e-01 | 97.8% | 85.0% |
| 4932126 | 300.1.1.6 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › Regulator_TrmB | 0.50 | 40.0 | 3.49e-01 | 88.0% | 98.6% |