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rifoxyd1_full_scaffold_5_prodigal-single.1__X__X__00137
Bact-Virrifoxyd1_full_scaffold_5_prodigal-single.1__X__X__00137
Identity
- Kingdom:
- phage
Quality
74.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 26-96
Domain cluster:
representative
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3iujA02 | 2.130.10.120 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain | 0.64 | 56.0 | 3.65e-01 | 100.0% | 35.2% |
| 6b9tF01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.63 | 46.0 | 3.85e-01 | 77.5% | 96.0% |
| 4nehA01 | 2.130.10.130 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Integrin alpha, N-terminal | 0.62 | 55.0 | 3.46e-01 | 100.0% | 39.2% |
| 2zadA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.62 | 44.0 | 3.74e-01 | 73.2% | 55.3% |
| 3fgbA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.62 | 54.0 | 3.45e-01 | 98.6% | 33.5% |
| 3u97A00 | 3.10.450.530 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Ribonuclease toxin, BrnT, of type II toxin-antitoxin system | 0.61 | 41.0 | 4.02e-01 | 78.9% | 63.6% |
| 3zqsA01 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.61 | 44.0 | 4.16e-01 | 80.3% | 62.5% |
| 1f9cA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.61 | 44.0 | 3.81e-01 | 80.3% | 88.5% |
| 4htgA03 | 3.30.160.40 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain | 0.58 | 42.0 | 4.13e-01 | 78.9% | 89.9% |
| 3gxwC00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.58 | 41.0 | 3.75e-01 | 76.1% | 74.0% |
| 4dxkA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.57 | 42.0 | 3.61e-01 | 81.7% | 80.8% |
| 4gqaB02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.56 | 39.0 | 2.76e-01 | 73.2% | 74.7% |
| 5g5gB02 | 3.30.390.50 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain | 0.56 | 44.0 | 4.13e-01 | 90.1% | 81.9% |
| 3s27B01 | 3.10.450.330 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.55 | 48.0 | 3.98e-01 | 100.0% | 57.1% |
| 4hz9B00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.55 | 44.0 | 3.72e-01 | 90.1% | 95.1% |
| 5aykA07 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.54 | 45.0 | 3.86e-01 | 93.0% | 92.2% |
| 2qkdA03 | 2.20.25.420 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain | 0.54 | 37.0 | 4.11e-01 | 71.8% | 98.0% |
| 3lhnA00 | 2.40.128.640 | Mainly Beta › Beta Barrel › Lipocalin › | 0.54 | 41.0 | 3.65e-01 | 84.5% | 71.0% |
| 1vkdA00 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.52 | 43.0 | 2.91e-01 | 100.0% | 50.9% |
| 2xp1A01 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.52 | 45.0 | 4.13e-01 | 100.0% | 75.8% |
| 3n4rA00 | 3.90.1150.80 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › | 0.52 | 44.0 | 4.10e-01 | 100.0% | 76.3% |
| 3p8bB02 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.51 | 34.0 | 3.63e-01 | 78.9% | 82.3% |
ECOD (35)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1169854 | 218.1.1.1 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N | 0.66 | 43.0 | 3.90e-01 | 71.8% | 48.5% |
| 3291529 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.65 | 54.0 | 4.73e-01 | 97.2% | 60.2% |
| 3781393 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.65 | 56.0 | 5.33e-01 | 100.0% | 86.9% |
| 3511414 | 2.9.1.1 ↗ | beta barrels › OB-fold › RNB domain-like › RNB domain-like › RNB | 0.63 | 53.0 | 3.32e-01 | 95.8% | 72.9% |
| 3524156 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.62 | 54.0 | 3.50e-01 | 98.6% | 35.9% |
| 3259407 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.62 | 44.0 | 4.19e-01 | 74.6% | 63.5% |
| 3917376 | 4.1.1.239 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O | 0.62 | 46.0 | 4.69e-01 | 80.3% | 85.7% |
| 3204911 | 216.1.1.20 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › UBC_like | 0.62 | 48.0 | 4.09e-01 | 85.9% | 83.3% |
| 3498091 | 216.1.1.20 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › UBC_like | 0.61 | 46.0 | 3.83e-01 | 83.1% | 44.6% |
| 3913519 | 216.1.1.9 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › FANCL_d2 | 0.61 | 45.0 | 3.97e-01 | 83.1% | 53.3% |
| 3276021 | 5.1.4.37 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nup160 | 0.61 | 53.0 | 3.18e-01 | 100.0% | 28.0% |
| 3255549 | 216.1.1.9 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › FANCL_d2 | 0.60 | 44.0 | 3.73e-01 | 80.3% | 47.8% |
| 3934802 | 216.1.1.20 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › UBC_like | 0.60 | 44.0 | 4.03e-01 | 83.1% | 58.9% |
| 3917054 | 241.15.1.3 ↗ | a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › SPC25 | 0.60 | 51.0 | 4.33e-01 | 100.0% | 75.2% |
| 4090939 | 330.4.1.1 ↗ | a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC | 0.60 | 46.0 | 4.46e-01 | 84.5% | 91.3% |
| 3513281 | 708.1.1.4 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH | 0.59 | 44.0 | 4.14e-01 | 81.7% | 65.9% |
| 3599577 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.58 | 49.0 | 3.22e-01 | 98.6% | 39.7% |
| 3505384 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.57 | 50.0 | 3.28e-01 | 98.6% | 33.8% |
| 5036384 | 4187.1.1.0 ↗ | a+b two layers › NosL/MerB-like › NosL/MerB-like › NosL/MerB-like | 0.57 | 41.0 | 4.05e-01 | 78.9% | 72.5% |
| 3321190 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.57 | 50.0 | 3.27e-01 | 100.0% | 37.0% |
| 3520092 | 708.1.1.4 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH | 0.57 | 41.0 | 3.99e-01 | 77.5% | 72.5% |
| 5059099 | 241.2.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like | 0.57 | 45.0 | 4.25e-01 | 100.0% | 71.6% |
| 3962288 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.57 | 42.0 | 3.53e-01 | 81.7% | 59.2% |
| 5016731 | 5.1.4.559 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta_propel | 0.56 | 48.0 | 2.97e-01 | 100.0% | 40.4% |
| 4974435 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.56 | 45.0 | 4.15e-01 | 91.5% | 86.3% |
| 3584298 | 7579.1.1.0 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases | 0.55 | 41.0 | 3.10e-01 | 81.7% | 35.8% |
| None | — | 0.55 | 46.0 | 3.01e-01 | 98.6% | 65.5% | |
| 3204007 | 216.1.1.4 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › RWD | 0.55 | 45.0 | 3.89e-01 | 100.0% | 72.3% |
| 3626003 | 216.1.1.17 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › Med15_C | 0.54 | 44.0 | 3.94e-01 | 100.0% | 73.0% |
| 4170699 | 5.1.3.4 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › WD40 | 0.54 | 46.0 | 3.03e-01 | 100.0% | 40.6% |
| 184884 | 375.1.1.21 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 | 0.53 | 37.0 | 3.96e-01 | 74.6% | 86.7% |
| 5047667 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.53 | 45.0 | 4.08e-01 | 98.6% | 87.0% |
| 3973387 | 5.1.5.74 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DUF3686 | 0.52 | 42.0 | 2.85e-01 | 94.4% | 39.4% |
| 3199598 | 206.1.1.71 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, Kdo | 0.52 | 41.0 | 2.83e-01 | 88.7% | 37.8% |
| 3247097 | 216.1.1.17 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › Med15_C | 0.51 | 42.0 | 3.77e-01 | 100.0% | 75.7% |