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rifoxyd1_full_scaffold_5_prodigal-single.1__X__X__00148
Bact-Virrifoxyd1_full_scaffold_5_prodigal-single.1__X__X__00148
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-76
Domain cluster:
representative
CATH (40)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4gf3A00 | 3.30.1460.10 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.73 | 63.0 | 5.40e-01 | 97.4% | 91.1% |
| 3nctA00 | 3.40.50.11880 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Plasmid SOS inhibition protein | 0.70 | 62.0 | 5.14e-01 | 100.0% | 75.9% |
| 1d4tA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.70 | 58.0 | 5.30e-01 | 93.4% | 93.3% |
| 3i9v700 | 3.30.920.80 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › NADH-quinone oxidoreductase, subunit 15 | 0.69 | 60.0 | 5.18e-01 | 100.0% | 92.1% |
| 1i3zA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.69 | 58.0 | 5.29e-01 | 93.4% | 93.2% |
| 1ul7A00 | 3.30.310.80 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 | 0.69 | 58.0 | 5.24e-01 | 90.8% | 78.4% |
| 2jozA01 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.68 | 50.0 | 4.65e-01 | 77.6% | 99.0% |
| 7mhwA01 | 2.40.128.10 | Mainly Beta › Beta Barrel › Lipocalin › | 0.67 | 49.0 | 4.73e-01 | 78.9% | 100.0% |
| 4fr9A00 | 3.10.450.360 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.67 | 51.0 | 4.15e-01 | 81.6% | 63.8% |
| 4hbrA00 | 3.10.450.360 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.67 | 51.0 | 4.28e-01 | 84.2% | 84.3% |
| 2ffgA00 | 3.30.720.20 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Protein of unknown function DUF1797 | 0.67 | 54.0 | 5.36e-01 | 88.2% | 90.0% |
| 2v8qA01 | 3.30.310.80 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 | 0.66 | 58.0 | 5.49e-01 | 94.7% | 86.5% |
| 4u3qB00 | 2.40.128.640 | Mainly Beta › Beta Barrel › Lipocalin › | 0.65 | 51.0 | 4.71e-01 | 85.5% | 94.9% |
| 4k3yC00 | 2.120.10.10 | Mainly Beta › 6 Propeller › Neuraminidase › | 0.65 | 47.0 | 3.01e-01 | 76.3% | 28.2% |
| 2ffsA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.65 | 53.0 | 4.34e-01 | 90.8% | 75.9% |
| 2oq1A03 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.63 | 53.0 | 4.83e-01 | 92.1% | 93.0% |
| 3m2tA02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.63 | 48.0 | 3.87e-01 | 82.9% | 100.0% |
| 2c9wA01 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.63 | 54.0 | 4.83e-01 | 100.0% | 92.9% |
| 5vc2A02 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.62 | 56.0 | 4.54e-01 | 100.0% | 73.8% |
| 3bc8A03 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.61 | 53.0 | 4.42e-01 | 100.0% | 86.2% |
| 1iugA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.60 | 54.0 | 4.76e-01 | 100.0% | 83.8% |
| 1wyuB02 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.60 | 53.0 | 4.49e-01 | 100.0% | 77.3% |
| 1p49A03 | 3.30.1120.10 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.59 | 41.0 | 3.68e-01 | 72.4% | 77.8% |
| 6fh1B01 | 3.30.590.10 | Alpha Beta › 2-Layer Sandwich › Creatine Kinase; Chain A, domain 2 › Glutamine synthetase/guanido kinase, catalytic domain | 0.59 | 47.0 | 3.41e-01 | 89.5% | 43.3% |
| 2v43A01 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.59 | 43.0 | 3.37e-01 | 80.3% | 86.3% |
| 1jg8A02 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.58 | 51.0 | 4.76e-01 | 100.0% | 92.7% |
| 4tpsA00 | 3.30.310.250 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Sporulation inhibitor of replication protein SirA | 0.57 | 44.0 | 3.71e-01 | 89.5% | 46.4% |
| 1yarH00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.57 | 48.0 | 3.60e-01 | 96.1% | 60.1% |
| 8gzhC01 | 3.90.1110.10 | Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 | 0.57 | 42.0 | 3.24e-01 | 78.9% | 62.4% |
| 3r90A00 | 3.10.400.20 | Alpha Beta › Roll › Sulfate adenylyltransferase › | 0.57 | 40.0 | 3.12e-01 | 76.3% | 93.0% |
| 3jv1A00 | 3.10.280.10 | Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein | 0.56 | 45.0 | 3.55e-01 | 92.1% | 68.1% |
| 1wthA02 | 3.10.450.190 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 39.0 | 3.57e-01 | 76.3% | 96.1% |
| 4n9jA02 | 3.30.1120.130 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.54 | 40.0 | 3.60e-01 | 78.9% | 56.1% |
| 1hlcA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.54 | 40.0 | 3.45e-01 | 81.6% | 70.5% |
| 2wkkA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.53 | 41.0 | 3.28e-01 | 81.6% | 62.7% |
| 1w0pA01 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.52 | 42.0 | 3.27e-01 | 89.5% | 52.5% |
| 4ns4A00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.52 | 45.0 | 3.14e-01 | 100.0% | 81.9% |
| 5c3vA01 | 3.30.800.10 | Alpha Beta › 2-Layer Sandwich › Phosphatidylinositol Phosphate Kinase II Beta › Phosphatidylinositol Phosphate Kinase II Beta | 0.51 | 36.0 | 2.86e-01 | 75.0% | 90.4% |
| 2r0hA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.51 | 37.0 | 3.05e-01 | 81.6% | 67.5% |
| 2codA01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.51 | 40.0 | 3.72e-01 | 85.5% | 74.0% |
ECOD (53)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3625247 | 241.15.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain | 0.81 | 73.0 | 6.41e-01 | 98.7% | 88.2% |
| 5061240 | 241.1.1.30 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › PF26556 | 0.81 | 73.0 | 5.88e-01 | 98.7% | 91.4% |
| 5000990 | 241.1.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone | 0.79 | 71.0 | 5.61e-01 | 100.0% | 77.4% |
| 5045407 | 241.1.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone | 0.78 | 71.0 | 5.87e-01 | 100.0% | 90.0% |
| 4991282 | 241.1.1.5 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › DUF2299 | 0.78 | 70.0 | 5.65e-01 | 100.0% | 93.1% |
| 5047554 | 241.1.1.5 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › DUF2299 | 0.77 | 70.0 | 5.55e-01 | 100.0% | 88.7% |
| 5059660 | 241.1.1.30 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › PF26556 | 0.76 | 68.0 | 5.57e-01 | 100.0% | 91.4% |
| 4225063 | 3840.1.1.2 ↗ | a+b two layers › Bacterial conjugation factor PsiB › Bacterial conjugation factor PsiB › Bacterial conjugation factor PsiB › PerB | 0.74 | 65.0 | 5.83e-01 | 100.0% | 82.7% |
| 3738183 | 4099.1.1.10 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Med1 | 0.73 | 64.0 | 5.43e-01 | 97.4% | 76.8% |
| 3606615 | 241.10.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › GAS2 domain › GAS2 domain | 0.73 | 65.0 | 6.16e-01 | 98.7% | 96.7% |
| 5052825 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.73 | 65.0 | 5.85e-01 | 100.0% | 92.4% |
| 3602709 | 241.15.1.6 ↗ | a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › PF27355 | 0.73 | 64.0 | 5.09e-01 | 100.0% | 91.9% |
| 5004346 | 331.19.1.0 ↗ | a+b two layers › TBP-like › Toxin RnlA N-terminal domains › Toxin RnlA N-terminal domains | 0.71 | 59.0 | 5.74e-01 | 89.5% | 87.1% |
| 3168452 | 331.10.2.3 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase › Med1 | 0.71 | 62.0 | 5.56e-01 | 97.4% | 97.1% |
| 4122018 | 4099.1.1.10 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Med1 | 0.71 | 61.0 | 5.62e-01 | 97.4% | 97.0% |
| 5014688 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.68 | 47.0 | 5.35e-01 | 71.1% | 100.0% |
| 3579622 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.68 | 57.0 | 5.05e-01 | 92.1% | 70.0% |
| 847 | 9.1.1.20 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF3255 | 0.67 | 53.0 | 4.50e-01 | 85.5% | 81.7% |
| 5007357 | 3435.1.1.10 ↗ | a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC › PF27341 | 0.67 | 60.0 | 4.18e-01 | 96.1% | 45.3% |
| 6667 | 4221.1.1.1 ↗ | a+b two layers › YkuJ-like › YkuJ-like › YkuJ-like › DUF1797 | 0.67 | 54.0 | 5.41e-01 | 88.2% | 92.3% |
| 2491409 | 219.1.1.117 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › PF30660 | 0.66 | 54.0 | 4.04e-01 | 88.2% | 36.9% |
| 3749834 | 64.1.1.0 ↗ | beta meanders › WW domain-like › WW domain › WW domain | 0.66 | 45.0 | 5.01e-01 | 81.6% | 96.4% |
| 4978135 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.66 | 49.0 | 4.03e-01 | 80.3% | 50.3% |
| 5048260 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.66 | 49.0 | 3.93e-01 | 80.3% | 49.7% |
| 1147818 | 216.1.1.8 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › Knl1_RWD_C | 0.66 | 50.0 | 4.39e-01 | 82.9% | 87.2% |
| 4958522 | 512.1.1.1 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st | 0.66 | 49.0 | 5.25e-01 | 98.7% | 92.3% |
| 4393929 | 12.3.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich | 0.65 | 50.0 | 3.28e-01 | 84.2% | 84.1% |
| 3360656 | 331.4.1.2 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › NAF | 0.64 | 55.0 | 4.60e-01 | 93.4% | 57.8% |
| 3465761 | 708.1.1.7 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › DBD_Tnp_Mut | 0.64 | 49.0 | 4.15e-01 | 100.0% | 48.5% |
| 5083613 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.64 | 58.0 | 5.40e-01 | 100.0% | 94.7% |
| 3975056 | 241.13.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › N-terminal domain of secreted effector protein sifA › N-terminal domain of secreted effector protein sifA | 0.63 | 47.0 | 3.99e-01 | 80.3% | 51.5% |
| 3239831 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.63 | 45.0 | 3.69e-01 | 75.0% | 45.7% |
| 4404709 | 71.1.1.3 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB | 0.62 | 54.0 | 4.14e-01 | 96.1% | 44.6% |
| 4949939 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.62 | 46.0 | 3.81e-01 | 80.3% | 50.3% |
| 3742222 | 3016.1.1.10 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › GDC-P | 0.62 | 53.0 | 4.88e-01 | 93.4% | 81.6% |
| 3243732 | 12.3.1.19 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Gal_mutarotas_2 | 0.62 | 54.0 | 3.57e-01 | 100.0% | 86.0% |
| 3235525 | 207.1.1.81 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH | 0.60 | 42.0 | 3.13e-01 | 80.3% | 27.5% |
| 224157 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.60 | 54.0 | 4.95e-01 | 100.0% | 93.9% |
| 4003932 | 292.2.1.0 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain | 0.60 | 52.0 | 4.47e-01 | 96.1% | 94.2% |
| 3994170 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.60 | 42.0 | 3.09e-01 | 73.7% | 39.7% |
| 3585414 | 292.2.1.0 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain | 0.60 | 52.0 | 4.67e-01 | 100.0% | 93.6% |
| 4928595 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.60 | 42.0 | 3.81e-01 | 82.9% | 53.3% |
| 3211804 | 207.1.1.81 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH | 0.59 | 41.0 | 2.79e-01 | 75.0% | 20.5% |
| 3688114 | 5.1.4.100 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Med16_N | 0.56 | 49.0 | 3.01e-01 | 100.0% | 34.7% |
| 3912697 | 292.2.1.3 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › Plk4_PB2 | 0.55 | 41.0 | 3.65e-01 | 78.9% | 54.5% |
| 3576415 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.55 | 45.0 | 2.98e-01 | 90.8% | 84.2% |
| 4390515 | 71.1.1.3 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB | 0.54 | 47.0 | 3.68e-01 | 96.1% | 48.1% |
| 5016556 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.54 | 46.0 | 4.36e-01 | 97.4% | 80.0% |
| 4948381 | 331.10.2.0 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase | 0.52 | 41.0 | 3.98e-01 | 89.5% | 82.2% |
| 5049779 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.52 | 39.0 | 3.03e-01 | 80.3% | 50.3% |
| 3281893 | 71.2.1.1 ↗ | beta meanders › Lipoprotein localization factors LolAB › PA1994-like › PA1994-like › Glycolipid_bind | 0.52 | 44.0 | 3.44e-01 | 98.7% | 64.9% |
| 5003246 | 2.7.1.1 ↗ | beta barrels › OB-fold › Tail-associated lysozyme gp5-N › Tail-associated lysozyme gp5-N › Phage_base_V | 0.51 | 37.0 | 2.99e-01 | 77.6% | 41.3% |
| 3684031 | 7512.1.1.1 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDPGT | 0.50 | 43.0 | 3.02e-01 | 100.0% | 52.8% |