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rifoxyd1_full_scaffold_5_prodigal-single.1__X__X__00151

Bact-Vir

rifoxyd1_full_scaffold_5_prodigal-single.1__X__X__00151

Identity

Kingdom:
phage

Quality

74.8 mean pLDDT

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 51-138
PDB
Domain cluster: representative
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1vx7N01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.67 44.0 4.49e-01 85.2% 69.4%
2kdsA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.65 43.0 4.34e-01 83.0% 68.6%
4dq2A03 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.64 36.0 4.38e-01 77.3% 100.0%
7oiyA01 3.90.70.130 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.61 49.0 3.59e-01 87.5% 42.0%
6ei1A01 3.90.70.130 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.60 49.0 3.51e-01 87.5% 42.7%
2diqA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 38.0 3.73e-01 89.8% 60.0%
6uzjA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 39.0 4.55e-01 79.5% 100.0%
1fgyA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 39.0 3.49e-01 73.9% 79.4%
1tg0A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 40.0 4.57e-01 79.5% 100.0%
2vrwB02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 38.0 3.48e-01 73.9% 64.5%
3op1A02 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.54 38.0 3.54e-01 100.0% 58.6%
5ycqA00 2.30.30.390 Mainly Beta › Roll › SH3 type barrels. › Hemimethylated DNA-binding domain 0.54 41.0 4.43e-01 98.9% 93.5%
1v5pA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 37.0 3.55e-01 72.7% 89.3%
1eazA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 37.0 3.55e-01 73.9% 79.6%
1fhoA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 37.0 3.40e-01 75.0% 71.4%
3bb7A01 3.90.70.50 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Streptopain (SpeB) 0.52 46.0 3.72e-01 98.9% 57.5%
2coaA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 36.0 3.31e-01 73.9% 71.2%
2rgnB02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 36.0 3.27e-01 73.9% 65.9%
2dhkA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 36.0 3.53e-01 76.1% 82.0%
2dfkC02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 37.0 3.18e-01 77.3% 63.8%
1wgqA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 37.0 3.53e-01 79.5% 78.9%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3537417 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 40.0 5.49e-01 78.4% 100.0%
4516378 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.68 46.0 5.09e-01 93.2% 87.1%
3964422 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.68 46.0 3.68e-01 87.5% 38.1%
2803945 4.1.1.24 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L14e 0.66 44.0 3.72e-01 88.6% 42.6%
4559992 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.66 44.0 4.18e-01 88.6% 58.3%
4943151 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 44.0 4.45e-01 90.9% 67.8%
2675860 4.1.1.15 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L6e 0.64 45.0 4.06e-01 93.2% 55.3%
3734395 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 42.0 4.79e-01 94.3% 98.4%
3176049 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.60 43.0 4.82e-01 97.7% 95.7%
3665226 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 40.0 2.74e-01 71.6% 38.8%
4266110 4.1.1.237 ↗ beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.58 40.0 4.44e-01 98.9% 91.4%
3317929 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.57 40.0 3.86e-01 72.7% 65.0%
3210799 375.1.1.52 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zinc_ribbon_6 0.57 34.0 3.82e-01 73.9% 79.7%
3926623 4184.1.1.0 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat 0.56 41.0 4.41e-01 87.5% 91.8%
3461749 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 38.0 2.67e-01 71.6% 37.3%
3789579 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 38.0 3.52e-01 73.9% 82.6%
3940063 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.54 38.0 3.76e-01 73.9% 80.0%
3270411 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.54 38.0 3.50e-01 73.9% 68.7%
3507594 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 37.0 3.20e-01 73.9% 75.2%
3937468 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 36.0 3.43e-01 72.7% 75.5%
3625264 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 40.0 3.91e-01 81.8% 89.5%
3243986 220.1.1.79 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › TBC1D23_C 0.51 35.0 3.39e-01 72.7% 83.8%
4029401 219.1.1.14 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Josephin 0.51 39.0 3.13e-01 87.5% 40.0%
3576940 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.50 45.0 3.31e-01 96.6% 45.3%
4507316 220.1.1.20 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_TFIIH 0.50 35.0 3.22e-01 72.7% 76.5%