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rifoxyd1_full_scaffold_5_prodigal-single.1__X__X__00174

Bact-Vir

rifoxyd1_full_scaffold_5_prodigal-single.1__X__X__00174

Identity

Kingdom:
phage

Quality

86.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-67
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2qlzA02 6.10.250.2960 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.68 46.0 4.25e-01 70.1% 68.6%
4p5aC00 3.30.1360.170 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.68 46.0 3.19e-01 70.1% 61.0%
4bzaA01 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.58 41.0 4.13e-01 79.1% 73.5%
2pnqA00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.55 48.0 3.02e-01 100.0% 70.4%
2kzyA00 1.20.5.4770 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.54 34.0 3.56e-01 77.6% 69.4%
3s1tA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.52 35.0 3.31e-01 70.1% 88.7%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
None — 0.56 46.0 2.88e-01 100.0% 62.0%
3412803 207.1.1.114 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_TMOD-LMOD 0.56 51.0 3.48e-01 100.0% 52.2%
3687615 109.24.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Helical domain in dedicator of cytokinesis protein 9 › Helical domain in dedicator of cytokinesis protein 9 0.53 49.0 4.32e-01 100.0% 90.5%