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rifoxyd1_full_scaffold_5_prodigal-single.1__X__X__00175
Bact-Virrifoxyd1_full_scaffold_5_prodigal-single.1__X__X__00175
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 9-45
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2pw4A00 | 1.10.3300.10 | Mainly Alpha › Orthogonal Bundle › Jann2411-like fold › Jann2411-like domain | 0.81 | 68.0 | 4.35e-01 | 100.0% | 21.3% |
| 5wtzA01 | 3.90.176.10 | Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 | 0.68 | 42.0 | 2.60e-01 | 94.6% | 10.8% |
| 1o5wC03 | 6.10.250.130 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.55 | 36.0 | 3.32e-01 | 97.3% | 51.0% |
| 4f9cB02 | 6.10.250.3410 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › DBF zinc finger | 0.51 | 36.0 | 3.64e-01 | 100.0% | 80.5% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3394478 | 377.1.1.16 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf-FCS | 0.83 | 70.0 | 6.56e-01 | 94.6% | 97.8% |
| 3541 | 4107.1.1.1 ↗ | alpha arrays › Jann2411-like › Jann2411-like › Jann2411-like › ABATE,zf-CGNR | 0.81 | 68.0 | 4.34e-01 | 100.0% | 21.2% |
| 4155531 | 377.1.1.15 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › YacG | 0.81 | 73.0 | 6.55e-01 | 100.0% | 74.0% |
| 4314985 | 377.1.1.15 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › YacG | 0.81 | 71.0 | 6.83e-01 | 100.0% | 86.0% |
| 3855126 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.77 | 62.0 | 6.39e-01 | 89.2% | 94.3% |
| 3897438 | 377.1.1.26 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf-FCS_1 | 0.74 | 54.0 | 5.78e-01 | 78.4% | 96.7% |
| 3605877 | 109.4.1.1164 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › zf-MYND | 0.73 | 66.0 | 3.74e-01 | 100.0% | 32.4% |
| 3258158 | 377.9.1.1 ↗ | few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › zf-MYND | 0.72 | 60.0 | 5.65e-01 | 91.9% | 81.8% |
| 3489858 | 377.9.1.9 ↗ | few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › MYND_ZMYND11_ZMYD8 | 0.71 | 60.0 | 5.44e-01 | 94.6% | 70.0% |
| 3418010 | 377.9.1.1 ↗ | few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › zf-MYND | 0.71 | 58.0 | 5.72e-01 | 91.9% | 92.5% |
| 3800970 | 377.9.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like | 0.69 | 58.0 | 5.69e-01 | 94.6% | 85.0% |
| 3409921 | 377.9.1.1 ↗ | few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › zf-MYND | 0.69 | 59.0 | 5.34e-01 | 94.6% | 70.0% |
| 3405764 | 377.9.1.9 ↗ | few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › MYND_ZMYND11_ZMYD8 | 0.68 | 56.0 | 5.48e-01 | 94.6% | 85.0% |
| 3475334 | 377.9.1.1 ↗ | few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › zf-MYND | 0.68 | 59.0 | 5.77e-01 | 97.3% | 100.0% |
| 3401887 | 377.9.1.6 ↗ | few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › YL1_C | 0.67 | 56.0 | 5.54e-01 | 97.3% | 90.0% |
| 3269829 | 377.9.1.1 ↗ | few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › zf-MYND | 0.64 | 56.0 | 5.31e-01 | 100.0% | 86.7% |
| 3482440 | 377.1.1.9 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › XPA_N | 0.64 | 44.0 | 4.77e-01 | 73.0% | 96.6% |
| 3935895 | 377.9.1.2 ↗ | few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › zf-HIT | 0.63 | 54.0 | 5.31e-01 | 100.0% | 92.5% |
| 8219 | 377.9.1.1 ↗ | few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › zf-MYND | 0.62 | 53.0 | 4.97e-01 | 100.0% | 78.7% |
| 3444825 | 377.9.1.1 ↗ | few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › zf-MYND | 0.62 | 51.0 | 4.67e-01 | 94.6% | 86.0% |
| 3873722 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.57 | 49.0 | 3.64e-01 | 100.0% | 58.9% |
| 3603155 | 3843.1.1.1 ↗ | alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › Oxidored_q2 | 0.55 | 45.0 | 3.22e-01 | 100.0% | 71.2% |
| 3724588 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.53 | 38.0 | 3.90e-01 | 81.1% | 93.9% |
| 5038834 | 2492.1.1.18 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB | 0.52 | 44.0 | 3.05e-01 | 100.0% | 34.1% |
| 4000903 | 386.1.1.9 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-U1 | 0.52 | 37.0 | 3.79e-01 | 100.0% | 100.0% |
D2
medium
residues 96-187
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2qgpA00 | 1.10.30.50 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › | 0.73 | 46.0 | 4.89e-01 | 76.1% | 71.1% |
| 3t7lA00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.70 | 34.0 | 3.85e-01 | 71.7% | 59.5% |
| 1e7lA01 | 3.40.1800.10 | Alpha Beta › 3-Layer(aba) Sandwich › His-Me finger endonuclease fold › His-Me finger endonucleases | 0.64 | 43.0 | 4.56e-01 | 76.1% | 78.8% |
| 1x4uA01 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.63 | 36.0 | 4.16e-01 | 73.9% | 76.8% |
| 1z2qA00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.62 | 35.0 | 3.66e-01 | 75.0% | 60.7% |
| 3m7kA00 | 3.30.40.220 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › | 0.60 | 43.0 | 3.67e-01 | 73.9% | 47.9% |
| 2co8A00 | 2.10.110.10 | Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein | 0.60 | 34.0 | 3.65e-01 | 80.4% | 63.4% |
| 1g2rA00 | 3.30.1230.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › YlxR-like | 0.53 | 38.0 | 3.84e-01 | 75.0% | 81.9% |
| 2ejeA00 | 3.90.1460.10 | Alpha Beta › Alpha-Beta Complex › GTF2I-like repeat › GTF2I-like | 0.52 | 35.0 | 3.36e-01 | 70.7% | 64.0% |
| 2dn4A00 | 3.90.1460.10 | Alpha Beta › Alpha-Beta Complex › GTF2I-like repeat › GTF2I-like | 0.51 | 35.0 | 3.44e-01 | 70.7% | 74.7% |
ECOD (20)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4938133 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.80 | 55.0 | 5.78e-01 | 73.9% | 77.6% |
| 5070853 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.79 | 47.0 | 4.96e-01 | 73.9% | 65.9% |
| 3587782 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.77 | 50.0 | 4.67e-01 | 78.3% | 54.5% |
| 4959591 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.77 | 48.0 | 5.69e-01 | 75.0% | 90.8% |
| 4966035 | 376.1.3.98 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › DUF7562 | 0.74 | 40.0 | 4.77e-01 | 71.7% | 80.0% |
| 3472338 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.72 | 36.0 | 4.44e-01 | 77.2% | 75.0% |
| 4951302 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.72 | 46.0 | 5.31e-01 | 75.0% | 90.8% |
| 3928471 | 376.1.3.32 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › RH_dom | 0.69 | 36.0 | 3.66e-01 | 73.9% | 51.1% |
| 4027754 | 376.1.1.3 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › ZZ | 0.69 | 30.0 | 4.01e-01 | 71.7% | 76.0% |
| 3211768 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.68 | 36.0 | 3.49e-01 | 78.3% | 44.8% |
| 3939139 | 376.1.3.32 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › RH_dom | 0.66 | 34.0 | 3.45e-01 | 73.9% | 47.4% |
| 4974548 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.62 | 43.0 | 4.73e-01 | 75.0% | 86.8% |
| 119462 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.60 | 43.0 | 3.66e-01 | 73.9% | 47.9% |
| 3269193 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.59 | 41.0 | 3.57e-01 | 73.9% | 48.9% |
| 3739776 | 376.1.1.61 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › Rtf2 | 0.59 | 29.0 | 3.15e-01 | 70.7% | 52.0% |
| 3748350 | 4305.1.1.1 ↗ | a+b two layers › GTF2I-like repeat › GTF2I-like repeat › GTF2I-like repeat › GTF2I | 0.51 | 35.0 | 3.43e-01 | 70.7% | 70.2% |
| 3498119 | 376.1.3.35 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › LIM | 0.51 | 35.0 | 4.16e-01 | 76.1% | 100.0% |
| 3572463 | 4305.1.1.1 ↗ | a+b two layers › GTF2I-like repeat › GTF2I-like repeat › GTF2I-like repeat › GTF2I | 0.51 | 35.0 | 3.40e-01 | 70.7% | 69.5% |
| 3561562 | 4305.1.1.1 ↗ | a+b two layers › GTF2I-like repeat › GTF2I-like repeat › GTF2I-like repeat › GTF2I | 0.50 | 35.0 | 3.36e-01 | 72.8% | 66.4% |
| 3418503 | 376.1.3.3 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE | 0.50 | 34.0 | 3.79e-01 | 75.0% | 86.7% |