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rifoxyd1_full_scaffold_5_prodigal-single.1__X__X__00216
Bact-Virrifoxyd1_full_scaffold_5_prodigal-single.1__X__X__00216
Identity
- Kingdom:
- phage
Quality
83.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 28-83
Domain cluster:
representative
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ayaA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.61 | 44.0 | 3.74e-01 | 80.4% | 100.0% |
| 3c4rA00 | 1.10.3600.10 | Mainly Alpha › Orthogonal Bundle › uncharacterized protein encoded by cryptic prophage fold › Putative bacterial toxin ydaT | 0.57 | 44.0 | 3.45e-01 | 85.7% | 47.6% |
| 3id7A00 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.56 | 45.0 | 2.82e-01 | 94.6% | 91.0% |
| 3pntA01 | 1.10.10.1660 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Nicotine adenine dinucleotide glycohydrolase, helical linker domain | 0.55 | 48.0 | 4.43e-01 | 100.0% | 76.0% |
| 3solA00 | 1.20.58.1630 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Chaperone lipoprotein PulS/OutS | 0.55 | 42.0 | 3.63e-01 | 83.9% | 62.6% |
| 1z6oM00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.52 | 44.0 | 3.12e-01 | 100.0% | 38.7% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3717314 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.59 | 46.0 | 3.33e-01 | 85.7% | 79.4% |
| 4268079 | 149.1.1.1 ↗ | alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 | 0.58 | 47.0 | 2.77e-01 | 94.6% | 18.3% |
| 4491625 | 152.1.2.1 ↗ | alpha arrays › RPB6/omega subunit-like › RPB6/omega subunit-like › RNA polymerase omega subunit › RNA_pol_Rpb6 | 0.56 | 38.0 | 3.62e-01 | 76.8% | 57.1% |
| 3980302 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.56 | 45.0 | 3.42e-01 | 100.0% | 57.0% |
| 3969499 | 2006.1.3.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain | 0.54 | 41.0 | 3.08e-01 | 87.5% | 33.5% |
| 3262871 | 1128.1.1.1 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR | 0.52 | 41.0 | 3.80e-01 | 91.1% | 86.7% |
| 3671163 | 101.1.1.267 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › PF26138 | 0.51 | 43.0 | 3.55e-01 | 100.0% | 65.5% |