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rifoxyd1_full_scaffold_5_prodigal-single.1__X__X__00228
Bact-Virrifoxyd1_full_scaffold_5_prodigal-single.1__X__X__00228
Identity
- Kingdom:
- phage
Quality
64.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 118-262
Domain cluster:
rep: MT074142.1__QIG64493.1__DAC23_219__00215__D39-244
CATH (45)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2wzpP01 | 2.40.30.210 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.79 | 44.0 | 5.03e-01 | 98.6% | 73.4% |
| 4divV01 | 2.40.30.200 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.77 | 56.0 | 5.75e-01 | 100.0% | 78.8% |
| 4dn9B00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.73 | 32.0 | 3.96e-01 | 78.6% | 62.9% |
| 3kg0A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.73 | 34.0 | 4.13e-01 | 79.3% | 66.0% |
| 2bbeA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.71 | 35.0 | 4.08e-01 | 97.2% | 65.0% |
| 3bm7A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.70 | 35.0 | 4.06e-01 | 97.9% | 65.1% |
| 2fb0A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.68 | 34.0 | 4.06e-01 | 96.6% | 71.3% |
| 3mgjA00 | 3.30.70.2690 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › LOR/SDH bifunctional enzyme, conserved domain | 0.68 | 30.0 | 3.57e-01 | 90.3% | 59.4% |
| 5fiiB00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.68 | 29.0 | 3.86e-01 | 78.6% | 73.1% |
| 7k0xA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.67 | 31.0 | 4.06e-01 | 100.0% | 78.2% |
| 6vh5C03 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.67 | 31.0 | 3.89e-01 | 80.7% | 70.8% |
| 2dt9A02 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.66 | 29.0 | 3.83e-01 | 78.6% | 73.4% |
| 1q8bA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.66 | 31.0 | 3.79e-01 | 77.9% | 67.7% |
| 2joqA01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.66 | 28.0 | 3.84e-01 | 79.3% | 76.0% |
| 2q9kA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.66 | 34.0 | 3.46e-01 | 100.0% | 49.0% |
| 4dpoB00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.65 | 33.0 | 3.90e-01 | 95.2% | 68.3% |
| 3luyA03 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.64 | 30.0 | 3.77e-01 | 80.7% | 71.9% |
| 3s1tA02 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.63 | 28.0 | 3.69e-01 | 78.6% | 73.8% |
| 3gz7B00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.63 | 32.0 | 3.82e-01 | 81.4% | 71.4% |
| 2gjvA00 | 3.30.2000.10 | Alpha Beta › 2-Layer Sandwich › STM4215-like › Phage tail protein-like | 0.63 | 38.0 | 3.95e-01 | 98.6% | 63.2% |
| 3e3pA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.62 | 32.0 | 4.22e-01 | 97.9% | 91.0% |
| 2y3uA02 | 3.30.980.50 | Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › | 0.61 | 36.0 | 4.06e-01 | 99.3% | 74.3% |
| 3n5fA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.61 | 36.0 | 4.03e-01 | 79.3% | 73.7% |
| 3io1A02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 36.0 | 3.95e-01 | 80.7% | 73.3% |
| 7d58G01 | 3.30.1490.120 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RNA polymerase Rpb7-like, N-terminal domain | 0.59 | 32.0 | 4.19e-01 | 80.7% | 100.0% |
| 3d85D02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.59 | 32.0 | 3.65e-01 | 100.0% | 70.8% |
| 2cc6A00 | 3.30.1660.10 | Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin | 0.59 | 28.0 | 3.91e-01 | 80.7% | 100.0% |
| 6wubf01 | 3.30.70.60 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B | 0.59 | 30.0 | 3.66e-01 | 77.9% | 75.5% |
| 4f0qD01 | 2.30.280.20 | Mainly Beta › Roll › PUA domain-like › | 0.58 | 45.0 | 3.69e-01 | 100.0% | 45.9% |
| 4ci2B02 | 2.30.130.40 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like | 0.58 | 33.0 | 3.59e-01 | 100.0% | 64.8% |
| 3onrJ00 | 3.30.1660.10 | Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin | 0.56 | 28.0 | 3.71e-01 | 80.7% | 94.1% |
| 2f7vA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 33.0 | 3.79e-01 | 79.3% | 77.8% |
| 1wi8A01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.56 | 25.0 | 3.29e-01 | 96.6% | 74.4% |
| 3fppA01 | 2.40.30.170 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain | 0.56 | 30.0 | 3.44e-01 | 100.0% | 69.2% |
| 2vxaA00 | 3.30.1660.10 | Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin | 0.56 | 27.0 | 3.68e-01 | 80.7% | 97.0% |
| 1vr4E00 | 3.30.110.70 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Hypothetical protein apc22750. Chain B | 0.55 | 31.0 | 3.78e-01 | 77.9% | 84.9% |
| 1go3E02 | 3.30.1490.120 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RNA polymerase Rpb7-like, N-terminal domain | 0.55 | 30.0 | 3.88e-01 | 80.7% | 93.8% |
| 3fz2A00 | 3.30.70.1700 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Phage minor tail protein U | 0.55 | 34.0 | 3.59e-01 | 98.6% | 67.2% |
| 4j37A02 | 3.30.70.660 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Pseudouridine synthase I, catalytic domain, C-terminal subdomain | 0.54 | 36.0 | 3.30e-01 | 77.9% | 50.0% |
| 1vs3A02 | 3.30.70.660 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Pseudouridine synthase I, catalytic domain, C-terminal subdomain | 0.52 | 33.0 | 3.35e-01 | 80.7% | 63.2% |
| 4nasB01 | 3.30.70.150 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RuBisCO large subunit, N-terminal domain | 0.52 | 30.0 | 3.39e-01 | 80.7% | 73.5% |
| 3pg1A01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.52 | 37.0 | 3.94e-01 | 96.6% | 82.9% |
| 1vm0A00 | 3.30.110.20 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain | 0.51 | 32.0 | 3.90e-01 | 99.3% | 97.8% |
| 6blkC00 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.50 | 31.0 | 3.08e-01 | 100.0% | 55.7% |
| 4hudA01 | 3.30.2000.40 | Alpha Beta › 2-Layer Sandwich › STM4215-like › Myoviridae tail sheath stabiliser | 0.50 | 35.0 | 3.12e-01 | 100.0% | 49.0% |
ECOD (36)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3164699 | 1.1.13.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DNA_circ_N | 0.82 | 56.0 | 6.27e-01 | 97.9% | 87.0% |
| 3587074 | 1.1.13.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Dit_N | 0.77 | 46.0 | 5.22e-01 | 100.0% | 78.2% |
| 4157825 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.76 | 56.0 | 5.91e-01 | 100.0% | 84.6% |
| 5004559 | 1.1.13.75 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › CIS_tube | 0.75 | 57.0 | 5.90e-01 | 96.6% | 84.4% |
| 4059301 | 1.1.13.47 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Dit_like | 0.74 | 46.0 | 5.27e-01 | 97.9% | 82.7% |
| 5062396 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.73 | 62.0 | 6.38e-01 | 97.9% | 91.4% |
| 2674670 | 1.1.13.6 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tail_2 | 0.73 | 53.0 | 4.99e-01 | 100.0% | 62.8% |
| 4957562 | 1.1.13.76 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DUF6046 | 0.73 | 46.0 | 5.30e-01 | 97.9% | 84.5% |
| 4929634 | 1.1.5.47 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_tube_2 | 0.73 | 50.0 | 3.99e-01 | 100.0% | 37.4% |
| 3726353 | 206.1.1.11 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH | 0.72 | 35.0 | 2.78e-01 | 100.0% | 23.1% |
| 3187986 | 1.1.8.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain | 0.70 | 33.0 | 3.87e-01 | 97.9% | 61.9% |
| 2101633 | 1.1.13.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tube | 0.70 | 52.0 | 4.94e-01 | 100.0% | 66.5% |
| 3218711 | 304.8.1.2 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT | 0.70 | 35.0 | 4.05e-01 | 100.0% | 65.7% |
| 2642579 | 1.1.13.6 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tail_2 | 0.70 | 50.0 | 5.27e-01 | 100.0% | 82.3% |
| 5007131 | 1.1.7.28 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel | 0.69 | 34.0 | 4.11e-01 | 100.0% | 70.5% |
| 3386856 | 304.8.1.2 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT | 0.68 | 31.0 | 3.92e-01 | 96.6% | 70.6% |
| 3976188 | 1.1.13.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tube | 0.68 | 52.0 | 4.95e-01 | 100.0% | 69.1% |
| 5011413 | 304.8.1.2 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT | 0.68 | 32.0 | 3.98e-01 | 98.6% | 71.1% |
| 3731186 | 872.1.1.0 ↗ | a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like | 0.67 | 33.0 | 4.74e-01 | 78.6% | 100.0% |
| 4234397 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.66 | 31.0 | 3.71e-01 | 82.1% | 64.0% |
| 3551257 | 304.8.1.2 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT | 0.66 | 31.0 | 3.68e-01 | 82.1% | 64.0% |
| 3909822 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.64 | 40.0 | 4.54e-01 | 98.6% | 81.8% |
| 2771056 | 304.8.1.2 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT | 0.64 | 32.0 | 3.84e-01 | 97.9% | 70.8% |
| 2575510 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.64 | 31.0 | 3.86e-01 | 96.6% | 72.3% |
| 5040945 | 304.124.1.0 ↗ | a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like | 0.63 | 40.0 | 3.99e-01 | 98.6% | 60.7% |
| 5454 | 304.124.1.2 ↗ | a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › Gp37 | 0.63 | 38.0 | 3.97e-01 | 98.6% | 64.2% |
| 5040331 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.60 | 44.0 | 4.40e-01 | 100.0% | 75.2% |
| 3602546 | 872.3.1.1 ↗ | a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like › YbjQ_1 | 0.59 | 34.0 | 3.97e-01 | 80.0% | 78.6% |
| 4650190 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.58 | 37.0 | 3.06e-01 | 100.0% | 35.8% |
| 4118093 | 1.1.5.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N | 0.55 | 38.0 | 3.75e-01 | 100.0% | 66.5% |
| 3710599 | 304.102.1.5 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,DKCLD,TruB_C_2 | 0.53 | 36.0 | 2.95e-01 | 98.6% | 36.3% |
| 3944238 | 2485.3.1.7 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Major_capside | 0.52 | 45.0 | 3.72e-01 | 97.2% | 89.4% |
| 4988254 | 1.1.5.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N | 0.52 | 37.0 | 3.48e-01 | 100.0% | 60.0% |
| 3896678 | 304.47.1.1 ↗ | a+b two layers › Alpha-beta plaits › SEA domain › SEA domain › SEA | 0.52 | 30.0 | 3.28e-01 | 82.1% | 67.5% |
| 4014778 | 1.1.5.10 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct | 0.51 | 42.0 | 3.57e-01 | 100.0% | 54.0% |
| 4996950 | 304.8.1.2 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT | 0.50 | 33.0 | 3.57e-01 | 100.0% | 76.6% |