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rifoxyd1_full_scaffold_5_prodigal-single.1__X__X__00261
Bact-Virrifoxyd1_full_scaffold_5_prodigal-single.1__X__X__00261
Identity
- Kingdom:
- phage
Quality
78.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-68
D2
high
residues 85-184
Domain cluster:
rep: IMGVR_UViG_3300028840_006907-3300028840-Ga0309773_1000015529__D9-106
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1hczA02 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.76 | 31.0 | 4.01e-01 | 85.0% | 64.4% |
| 1yueA03 | 3.30.2320.40 | Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › | 0.72 | 66.0 | 6.17e-01 | 99.0% | 90.1% |
| 1ohgA02 | 3.30.2320.10 | Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › hypothetical protein PF0899 domain | 0.69 | 63.0 | 6.18e-01 | 96.0% | 92.4% |
| 2pk8A00 | 3.30.2320.10 | Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › hypothetical protein PF0899 domain | 0.68 | 56.0 | 5.75e-01 | 93.0% | 92.6% |
| 1y96D00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.64 | 29.0 | 3.16e-01 | 90.0% | 49.4% |
| 3cpfA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.63 | 33.0 | 4.00e-01 | 89.0% | 78.5% |
| 1khiA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.62 | 33.0 | 3.77e-01 | 90.0% | 68.0% |
| 1iz6A01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.60 | 34.0 | 3.99e-01 | 90.0% | 79.7% |
| 1uebA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.60 | 33.0 | 4.04e-01 | 89.0% | 85.7% |
| 3m2tA02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.59 | 50.0 | 4.39e-01 | 93.0% | 83.6% |
| 1j5pA02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.59 | 48.0 | 4.76e-01 | 85.0% | 100.0% |
| 6s8zA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.57 | 32.0 | 3.86e-01 | 89.0% | 87.1% |
| 4hu8A01 | 2.60.40.1080 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.57 | 38.0 | 4.29e-01 | 96.0% | 92.1% |
| 4huzA02 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.55 | 40.0 | 3.52e-01 | 77.0% | 83.4% |
| 2i1yA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.55 | 47.0 | 3.51e-01 | 100.0% | 80.5% |
| 2xmoA01 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.54 | 45.0 | 3.25e-01 | 94.0% | 77.7% |
| 3kxtA00 | 2.30.30.610 | Mainly Beta › Roll › SH3 type barrels. › Chromatin protein Cren7 | 0.54 | 29.0 | 3.68e-01 | 87.0% | 92.9% |
| 3oyyA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.54 | 31.0 | 3.69e-01 | 86.0% | 84.8% |
| 5oyjC01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 39.0 | 4.06e-01 | 97.0% | 81.1% |
| 1a5yA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.53 | 46.0 | 3.44e-01 | 100.0% | 64.4% |
| 5l37C00 | 2.40.50.220 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › EutN/Ccml | 0.53 | 25.0 | 2.69e-01 | 80.0% | 46.5% |
| 4ge6A00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.53 | 45.0 | 3.34e-01 | 100.0% | 78.5% |
| 4hsqA01 | 2.60.40.740 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 44.0 | 3.93e-01 | 96.0% | 93.1% |
| 3a32A02 | 3.40.50.800 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain | 0.50 | 37.0 | 3.37e-01 | 79.0% | 69.5% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4988094 | 2485.3.1.18 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid_4 | 0.74 | 67.0 | 4.84e-01 | 97.0% | 57.6% |
| 3796107 | 227.1.1.1 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N | 0.73 | 37.0 | 3.96e-01 | 93.0% | 54.4% |
| 5083777 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.72 | 65.0 | 4.53e-01 | 96.0% | 45.3% |
| 3898522 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.72 | 37.0 | 5.00e-01 | 95.0% | 100.0% |
| 3882464 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.72 | 39.0 | 4.43e-01 | 97.0% | 70.7% |
| 3221233 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.66 | 30.0 | 4.20e-01 | 83.0% | 93.3% |
| 4025256 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.65 | 28.0 | 3.17e-01 | 78.0% | 50.0% |
| 3221229 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.65 | 30.0 | 4.11e-01 | 83.0% | 93.3% |
| 3544618 | 4292.2.1.0 ↗ | a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain | 0.61 | 35.0 | 3.75e-01 | 92.0% | 65.9% |
| 5018717 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.60 | 33.0 | 4.42e-01 | 82.0% | 100.0% |
| 4436049 | 1190.1.1.1 ↗ | a+b two layers › Curli production assembly/transport component CsgF › Curli production assembly/transport component CsgF › Curli production assembly/transport component CsgF › CsgF | 0.59 | 29.0 | 2.97e-01 | 91.0% | 48.0% |
| 4028885 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.59 | 33.0 | 4.03e-01 | 90.0% | 84.6% |
| 4646632 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.59 | 33.0 | 3.93e-01 | 89.0% | 83.1% |
| 4213539 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.57 | 32.0 | 3.84e-01 | 90.0% | 84.6% |
| 3244208 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 38.0 | 4.22e-01 | 100.0% | 93.3% |
| 3590827 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.55 | 31.0 | 3.68e-01 | 89.0% | 83.1% |
| 4981012 | 298.1.1.4 ↗ | a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Asp_DH_C | 0.55 | 43.0 | 4.14e-01 | 86.0% | 100.0% |
| 1396617 | 246.2.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos | 0.54 | 45.0 | 3.32e-01 | 94.0% | 84.5% |
| 3879153 | 11.1.1.97 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set | 0.54 | 42.0 | 4.28e-01 | 97.0% | 86.3% |
| 1284145 | 11.1.1.275 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › IL3Ra_N | 0.53 | 34.0 | 3.84e-01 | 94.0% | 85.5% |
| 4135259 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.53 | 30.0 | 3.63e-01 | 89.0% | 86.2% |
| 3924126 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 37.0 | 3.86e-01 | 94.0% | 80.0% |
| 3707416 | 246.2.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos | 0.52 | 44.0 | 3.16e-01 | 93.0% | 73.8% |
| 3460800 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.50 | 43.0 | 3.83e-01 | 96.0% | 84.7% |