←Back to structures
rifoxyd1_full_scaffold_5_prodigal-single.1__X__X__00271
Bact-Virrifoxyd1_full_scaffold_5_prodigal-single.1__X__X__00271
Identity
- Kingdom:
- phage
Quality
87.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-96_174-215
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3bxoA02 | 2.20.130.10 | Mainly Beta › Single Sheet › S-adenosyl-L-methionine-dependent methyltransferases › CAC2371-like domains | 0.64 | 26.0 | 3.91e-01 | 82.6% | 88.1% |
| 1wznA02 | 2.20.25.110 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases | 0.60 | 25.0 | 3.60e-01 | 81.9% | 89.3% |
| 2ea9A01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.57 | 27.0 | 3.16e-01 | 72.5% | 61.7% |
| 4r8oA00 | 2.40.128.720 | Mainly Beta › Beta Barrel › Lipocalin › | 0.55 | 33.0 | 3.87e-01 | 90.6% | 84.7% |
| 7ct3A01 | 3.30.450.30 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic | 0.54 | 28.0 | 2.98e-01 | 88.4% | 53.8% |
| 1ah5A03 | 3.30.160.40 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain | 0.52 | 27.0 | 3.41e-01 | 84.1% | 81.4% |
| 3dsbA01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.52 | 27.0 | 3.15e-01 | 91.3% | 68.3% |
| 3i9sA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.51 | 35.0 | 3.40e-01 | 98.6% | 59.6% |
| 4ua3A00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.50 | 30.0 | 2.79e-01 | 94.2% | 43.0% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5051985 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.59 | 34.0 | 4.11e-01 | 82.6% | 86.7% |
| 3494701 | 213.1.1.25 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_3 | 0.57 | 40.0 | 3.31e-01 | 70.3% | 98.0% |
| 3615406 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.51 | 26.0 | 2.93e-01 | 88.4% | 60.0% |
| 4983783 | 873.1.1.20 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › DUF6125 | 0.51 | 43.0 | 4.16e-01 | 92.8% | 83.7% |
| 4597953 | 4337.1.1.0 ↗ | a+b two layers › DNA mismatch repair protein MutL dimerization subdomain › DNA mismatch repair protein MutL dimerization subdomain › DNA mismatch repair protein MutL dimerization subdomain | 0.51 | 33.0 | 3.51e-01 | 86.2% | 75.7% |
| 4291224 | 4337.1.1.1 ↗ | a+b two layers › DNA mismatch repair protein MutL dimerization subdomain › DNA mismatch repair protein MutL dimerization subdomain › DNA mismatch repair protein MutL dimerization subdomain › MutL_C | 0.50 | 33.0 | 3.39e-01 | 86.2% | 68.5% |
D2
medium
residues 97-173
Domain cluster:
representative
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7vb8A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.69 | 61.0 | 5.39e-01 | 98.7% | 77.9% |
| 3rsnA00 | 3.90.980.20 | Alpha Beta › Alpha-Beta Complex › DNA primase DNAg catalytic core, N-terminal domain › | 0.64 | 56.0 | 4.41e-01 | 98.7% | 63.0% |
| 4f52C02 | 3.30.230.130 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › Cullin; Chain C, Domain 2 | 0.63 | 52.0 | 4.07e-01 | 93.5% | 43.4% |
| 5c17A00 | 3.30.450.410 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.63 | 57.0 | 4.13e-01 | 100.0% | 92.2% |
| 2q7bA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.59 | 47.0 | 3.73e-01 | 89.6% | 40.9% |
| 1d3yB02 | 3.40.1360.10 | Alpha Beta › 3-Layer(aba) Sandwich › Dna Topoisomerase Vi A Subunit; Chain: A, domain 2 › | 0.59 | 45.0 | 3.29e-01 | 81.8% | 59.0% |
| 1jlcB04 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.57 | 36.0 | 3.90e-01 | 83.1% | 76.6% |
| 4lg1B00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.56 | 45.0 | 3.42e-01 | 93.5% | 45.1% |
| 1d2gA02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.55 | 45.0 | 3.48e-01 | 92.2% | 39.4% |
| 1lk5A02 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.55 | 41.0 | 4.10e-01 | 85.7% | 78.5% |
| 4ywrA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.55 | 42.0 | 3.12e-01 | 87.0% | 33.8% |
| 3g0tA01 | 3.90.1150.100 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › | 0.55 | 38.0 | 3.02e-01 | 72.7% | 84.4% |
| 5vanA02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.55 | 42.0 | 2.73e-01 | 87.0% | 29.3% |
| 3up9A01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.54 | 41.0 | 3.43e-01 | 93.5% | 45.7% |
| 3g6sA00 | 3.60.10.10 | Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase | 0.54 | 43.0 | 3.04e-01 | 89.6% | 32.6% |
| 2z67A00 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.53 | 41.0 | 2.62e-01 | 87.0% | 18.0% |
| 1xtzA02 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.52 | 40.0 | 3.92e-01 | 85.7% | 79.8% |
| 2xwxA02 | 3.30.70.2150 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 38.0 | 3.49e-01 | 80.5% | 86.1% |
| 2f7lA01 | 3.40.120.10 | Alpha Beta › 3-Layer(aba) Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 › Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 | 0.51 | 41.0 | 3.41e-01 | 92.2% | 80.7% |
| 3mkcA02 | 3.20.20.120 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain | 0.50 | 38.0 | 2.83e-01 | 85.7% | 39.8% |
ECOD (34)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4055578 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.69 | 62.0 | 5.09e-01 | 100.0% | 88.6% |
| 3704811 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.68 | 58.0 | 4.90e-01 | 93.5% | 71.2% |
| 3598369 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.64 | 54.0 | 4.74e-01 | 93.5% | 63.5% |
| 4008897 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.64 | 55.0 | 4.79e-01 | 97.4% | 68.3% |
| 5074554 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.62 | 56.0 | 4.17e-01 | 100.0% | 76.9% |
| 3585425 | 101.1.2.98 ↗ | alpha arrays › HTH › HTH › winged helix domain › CDT1 | 0.62 | 52.0 | 4.92e-01 | 93.5% | 92.6% |
| 2754385 | 101.1.2.9 ↗ | alpha arrays › HTH › HTH › winged helix domain › DNA_topoisoIV | 0.61 | 54.0 | 4.29e-01 | 100.0% | 61.3% |
| 5057564 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.61 | 48.0 | 3.86e-01 | 96.1% | 41.9% |
| 3736628 | 101.1.2.251 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF6581 | 0.61 | 52.0 | 4.97e-01 | 94.8% | 96.7% |
| 3629452 | 101.1.2.98 ↗ | alpha arrays › HTH › HTH › winged helix domain › CDT1 | 0.61 | 53.0 | 4.07e-01 | 98.7% | 51.9% |
| 3341373 | 101.1.2.90 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_9 | 0.61 | 53.0 | 4.94e-01 | 96.1% | 78.9% |
| 3597631 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.61 | 53.0 | 3.73e-01 | 98.7% | 42.0% |
| 3785576 | 101.1.2.24 ↗ | alpha arrays › HTH › HTH › winged helix domain › MAGE | 0.60 | 51.0 | 4.41e-01 | 93.5% | 74.2% |
| 3240959 | 7558.1.1.0 ↗ | a/b three-layered sandwiches › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase | 0.60 | 53.0 | 4.72e-01 | 100.0% | 96.4% |
| 3519677 | 101.1.2.4 ↗ | alpha arrays › HTH › HTH › winged helix domain › Forkhead | 0.60 | 52.0 | 4.35e-01 | 100.0% | 92.1% |
| 3781188 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.59 | 49.0 | 4.65e-01 | 89.6% | 96.7% |
| 4942049 | 152.1.1.1 ↗ | alpha arrays › RPB6/omega subunit-like › RPB6/omega subunit-like › RPB6 › RNA_pol_Rpb6 | 0.59 | 26.0 | 2.68e-01 | 90.9% | 41.3% |
| 3518638 | 101.1.2.132 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF3591 | 0.59 | 52.0 | 4.92e-01 | 100.0% | 84.2% |
| 3256135 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.58 | 48.0 | 4.67e-01 | 93.5% | 95.3% |
| 3657500 | 328.4.1.1 ↗ | a+b two layers › IF3-like › YhbY-like › YhbY-like › CRS1_YhbY | 0.58 | 46.0 | 4.35e-01 | 97.4% | 70.4% |
| 4950302 | 7592.1.1.3 ↗ | a/b three-layered sandwiches › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › DUF6293_N | 0.57 | 46.0 | 3.66e-01 | 88.3% | 52.3% |
| 3926567 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 48.0 | 4.33e-01 | 96.1% | 85.5% |
| 3737243 | 109.4.1.223 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Aquarius_N_1st | 0.56 | 43.0 | 2.82e-01 | 85.7% | 39.7% |
| 3276767 | 224.1.1.1 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF | 0.54 | 37.0 | 3.12e-01 | 71.4% | 72.1% |
| 3971434 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 46.0 | 4.19e-01 | 94.8% | 73.3% |
| 3614842 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.54 | 42.0 | 2.99e-01 | 88.3% | 39.3% |
| 4885759 | 2003.1.7.10 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like › Rib_5-P_isom_A | 0.54 | 39.0 | 3.92e-01 | 81.8% | 75.0% |
| 3579183 | 206.1.3.14 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › GSH_synth_ATP | 0.53 | 39.0 | 2.55e-01 | 80.5% | 42.3% |
| 4388283 | 304.162.1.1 ↗ | a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain › CinA_KH | 0.53 | 33.0 | 3.47e-01 | 85.7% | 68.6% |
| 3514006 | 314.1.1.2 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b | 0.53 | 42.0 | 2.97e-01 | 94.8% | 67.9% |
| 3937944 | 206.1.3.14 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › GSH_synth_ATP | 0.53 | 39.0 | 2.55e-01 | 80.5% | 47.4% |
| 3739334 | 2003.1.5.73 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_16 | 0.52 | 41.0 | 2.94e-01 | 92.2% | 25.4% |
| 3328100 | 109.4.1.883 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 | 0.52 | 39.0 | 2.60e-01 | 84.4% | 21.9% |
| 4001749 | 206.1.3.14 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › GSH_synth_ATP | 0.51 | 39.0 | 3.11e-01 | 84.4% | 55.5% |