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rifoxyd1_full_scaffold_5_prodigal-single.1__X__X__00289
Bact-Virrifoxyd1_full_scaffold_5_prodigal-single.1__X__X__00289
Identity
- Kingdom:
- phage
Quality
86.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 12-162
Domain cluster:
rep: SR-VP_0-2_scaffold_141_2510002_prodigal-single.1__X__X__00086__D1-125
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00644.27 best | PARP | 43.0 | 5.30e-11 | 91.4% | 51.8% |
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4gv2A02 | 3.90.228.10 | Alpha Beta › Alpha-Beta Complex › Phosphoenolpyruvate Carboxykinase; domain 3 › | 0.88 | 85.0 | 7.38e-01 | 99.3% | 85.7% |
| 1gs0A02 | 3.90.228.10 | Alpha Beta › Alpha-Beta Complex › Phosphoenolpyruvate Carboxykinase; domain 3 › | 0.87 | 84.0 | 7.28e-01 | 100.0% | 83.7% |
| 2x5yA00 | 3.90.228.10 | Alpha Beta › Alpha-Beta Complex › Phosphoenolpyruvate Carboxykinase; domain 3 › | 0.85 | 77.0 | 7.32e-01 | 100.0% | 83.0% |
| 3hkvA00 | 3.90.228.10 | Alpha Beta › Alpha-Beta Complex › Phosphoenolpyruvate Carboxykinase; domain 3 › | 0.82 | 79.0 | 7.19e-01 | 100.0% | 82.8% |
| 2rf5A00 | 3.90.228.10 | Alpha Beta › Alpha-Beta Complex › Phosphoenolpyruvate Carboxykinase; domain 3 › | 0.81 | 77.0 | 6.80e-01 | 100.0% | 78.7% |
| 6tl1B01 | 3.90.228.10 | Alpha Beta › Alpha-Beta Complex › Phosphoenolpyruvate Carboxykinase; domain 3 › | 0.77 | 73.0 | 6.59e-01 | 100.0% | 84.9% |
| 2o0pA00 | 3.20.170.20 | Alpha Beta › Alpha-Beta Barrel › ADP-ribosylation fold › Protein of unknown function DUF952 | 0.68 | 45.0 | 5.10e-01 | 80.8% | 87.7% |
ECOD (60)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4014210 | 237.1.1.0 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation | 0.90 | 87.0 | 7.33e-01 | 100.0% | 83.8% |
| 3694624 | 237.1.1.1 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PARP | 0.90 | 87.0 | 7.04e-01 | 100.0% | 77.1% |
| 3242389 | 237.1.1.1 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PARP | 0.89 | 87.0 | 6.97e-01 | 100.0% | 70.0% |
| 3267977 | 237.1.1.1 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PARP | 0.89 | 86.0 | 6.86e-01 | 100.0% | 79.2% |
| 3258251 | 237.1.1.1 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PARP | 0.88 | 86.0 | 7.27e-01 | 100.0% | 78.7% |
| 3878517 | 237.1.1.1 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PARP | 0.88 | 85.0 | 7.21e-01 | 100.0% | 79.1% |
| 3798872 | 237.1.1.0 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation | 0.87 | 85.0 | 7.13e-01 | 100.0% | 77.4% |
| 3270835 | 237.1.1.1 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PARP | 0.87 | 85.0 | 7.20e-01 | 100.0% | 82.6% |
| 3727394 | 237.1.1.1 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PARP | 0.87 | 84.0 | 6.88e-01 | 100.0% | 81.6% |
| 3798868 | 237.1.1.1 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PARP | 0.87 | 85.0 | 7.06e-01 | 100.0% | 74.5% |
| 3470627 | 237.1.1.0 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation | 0.87 | 85.0 | 6.94e-01 | 100.0% | 73.5% |
| 3252897 | 237.1.1.1 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PARP | 0.87 | 85.0 | 7.36e-01 | 100.0% | 81.0% |
| 3536040 | 237.1.1.1 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PARP | 0.87 | 84.0 | 7.26e-01 | 100.0% | 73.5% |
| 3268811 | 237.1.1.1 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PARP | 0.86 | 84.0 | 7.23e-01 | 100.0% | 72.9% |
| 3250637 | 237.1.1.1 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PARP | 0.85 | 82.0 | 7.31e-01 | 100.0% | 78.5% |
| 3833168 | 237.1.1.1 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PARP | 0.84 | 81.0 | 6.30e-01 | 100.0% | 61.7% |
| 3269559 | 237.1.1.0 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation | 0.84 | 64.0 | 6.75e-01 | 100.0% | 86.7% |
| 3324343 | 237.1.1.1 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PARP | 0.84 | 80.0 | 7.27e-01 | 99.3% | 85.5% |
| 3862949 | 237.1.1.1 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PARP | 0.84 | 81.0 | 7.19e-01 | 100.0% | 79.0% |
| 3920549 | 237.1.1.1 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PARP | 0.83 | 69.0 | 6.56e-01 | 100.0% | 75.3% |
| 3905755 | 237.1.1.0 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation | 0.83 | 66.0 | 7.14e-01 | 81.5% | 100.0% |
| 3814112 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.83 | 80.0 | 7.15e-01 | 100.0% | 83.0% |
| 3501135 | 237.1.1.1 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PARP | 0.83 | 79.0 | 6.95e-01 | 100.0% | 86.2% |
| 3922705 | 237.1.1.1 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PARP | 0.83 | 80.0 | 7.04e-01 | 100.0% | 78.0% |
| 3916087 | 237.1.1.1 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PARP | 0.83 | 80.0 | 7.10e-01 | 100.0% | 78.5% |
| 3822306 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.82 | 79.0 | 7.02e-01 | 100.0% | 81.5% |
| 3258058 | 237.1.1.1 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PARP | 0.82 | 79.0 | 6.95e-01 | 100.0% | 73.7% |
| 3879371 | 237.1.1.1 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PARP | 0.82 | 77.0 | 7.17e-01 | 100.0% | 82.2% |
| 3423689 | 237.1.1.0 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation | 0.82 | 78.0 | 7.07e-01 | 100.0% | 82.1% |
| 3870487 | 237.1.1.1 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PARP | 0.82 | 77.0 | 6.71e-01 | 98.7% | 81.9% |
| 3241341 | 237.1.1.1 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PARP | 0.81 | 78.0 | 6.95e-01 | 100.0% | 82.8% |
| 3231438 | 237.1.1.0 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation | 0.81 | 77.0 | 6.73e-01 | 100.0% | 81.9% |
| 4876939 | 237.1.1.1 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PARP | 0.81 | 78.0 | 7.27e-01 | 100.0% | 84.1% |
| 3896918 | 237.1.1.0 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation | 0.81 | 77.0 | 6.33e-01 | 100.0% | 80.8% |
| 3239064 | 237.1.1.1 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PARP | 0.81 | 76.0 | 6.52e-01 | 98.7% | 81.8% |
| 3997265 | 237.1.1.0 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation | 0.81 | 77.0 | 6.78e-01 | 100.0% | 81.4% |
| 3683886 | 237.1.1.0 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation | 0.81 | 77.0 | 6.97e-01 | 100.0% | 85.1% |
| 3353724 | 237.1.1.0 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation | 0.80 | 78.0 | 7.06e-01 | 100.0% | 82.6% |
| 2075299 | 237.1.1.1 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PARP | 0.80 | 77.0 | 7.18e-01 | 100.0% | 88.2% |
| 3453008 | 237.1.1.1 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PARP | 0.80 | 77.0 | 6.76e-01 | 100.0% | 77.9% |
| 3711853 | 237.1.1.0 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation | 0.80 | 75.0 | 6.82e-01 | 100.0% | 77.9% |
| 3562744 | 237.1.1.18 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › DUF3715 | 0.80 | 76.0 | 6.55e-01 | 100.0% | 84.1% |
| 3543256 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.79 | 76.0 | 7.08e-01 | 100.0% | 88.3% |
| 3776068 | 237.1.1.0 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation | 0.79 | 75.0 | 6.88e-01 | 100.0% | 83.2% |
| 3618823 | 237.1.1.18 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › DUF3715 | 0.79 | 75.0 | 6.53e-01 | 100.0% | 80.9% |
| 3378730 | 237.1.1.0 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation | 0.78 | 75.0 | 6.55e-01 | 100.0% | 79.0% |
| 3262622 | 237.1.1.0 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation | 0.77 | 73.0 | 6.15e-01 | 100.0% | 83.3% |
| 3295358 | 237.1.1.0 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation | 0.77 | 74.0 | 6.14e-01 | 100.0% | 75.8% |
| 3829979 | 237.1.1.0 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation | 0.77 | 74.0 | 6.46e-01 | 100.0% | 78.5% |
| 3701032 | 237.1.1.0 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation | 0.76 | 61.0 | 6.09e-01 | 100.0% | 80.6% |
| 3196342 | 237.1.1.1 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PARP | 0.76 | 68.0 | 6.42e-01 | 99.3% | 79.9% |
| 3597511 | 237.1.1.0 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation | 0.76 | 72.0 | 6.56e-01 | 100.0% | 85.6% |
| 3908660 | 237.1.1.1 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PARP | 0.75 | 71.0 | 7.14e-01 | 100.0% | 98.7% |
| 3466858 | 237.1.1.0 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation | 0.74 | 69.0 | 6.27e-01 | 99.3% | 75.4% |
| 3724972 | 237.1.1.1 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PARP | 0.74 | 66.0 | 5.33e-01 | 98.0% | 52.8% |
| 3555152 | 237.1.1.1 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PARP | 0.73 | 70.0 | 6.45e-01 | 100.0% | 83.2% |
| 3250305 | 237.1.1.1 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PARP | 0.73 | 69.0 | 6.40e-01 | 100.0% | 83.2% |
| 3703519 | 237.1.1.0 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation | 0.70 | 67.0 | 5.98e-01 | 100.0% | 84.0% |
| 4029680 | 237.1.1.0 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation | 0.68 | 61.0 | 5.84e-01 | 100.0% | 84.0% |
| 3410782 | 237.1.1.0 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation | 0.67 | 54.0 | 5.32e-01 | 100.0% | 78.8% |
D2
high
residues 174-252
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1vq8U00 | 2.30.170.20 | Mainly Beta › Roll › Ribosomal Protein L24e; Chain: T; › Ribosomal protein L24 | 0.59 | 32.0 | 3.75e-01 | 79.7% | 77.4% |
| 7eu1A01 | 1.10.274.100 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › RNA polymerase Rpb1, domain 3 | 0.53 | 39.0 | 3.29e-01 | 81.0% | 59.2% |
| 4o1sA00 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.52 | 47.0 | 3.65e-01 | 100.0% | 77.6% |
| 2z0qA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.50 | 35.0 | 3.05e-01 | 73.4% | 91.4% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3259023 | 904.1.1.1 ↗ | few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › zf-B_box | 0.62 | 40.0 | 2.71e-01 | 100.0% | 18.5% |
| 3844612 | 376.1.1.3 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › ZZ | 0.58 | 33.0 | 3.63e-01 | 100.0% | 70.0% |
| 3895014 | 376.1.1.3 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › ZZ | 0.58 | 33.0 | 3.17e-01 | 100.0% | 46.7% |
| 3480497 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.54 | 31.0 | 3.41e-01 | 100.0% | 70.0% |