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rifoxyd1_full_scaffold_5_prodigal-single.1__X__X__00317
Bact-Virrifoxyd1_full_scaffold_5_prodigal-single.1__X__X__00317
Identity
- Kingdom:
- phage
Quality
70.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-88
Domain cluster:
representative
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2lqkA00 | 2.40.10.170 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.73 | 45.0 | 4.88e-01 | 90.4% | 74.3% |
| 4kbmB01 | 2.40.10.170 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.67 | 39.0 | 4.62e-01 | 90.4% | 87.3% |
| 2l0cA00 | 2.40.50.660 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.60 | 42.0 | 3.99e-01 | 83.1% | 61.9% |
| 3u1wA02 | 3.10.450.360 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.60 | 40.0 | 4.33e-01 | 89.2% | 86.4% |
| 2qkdA01 | 2.20.25.420 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain | 0.59 | 35.0 | 4.35e-01 | 91.6% | 100.0% |
| 2lt1A00 | 2.40.10.170 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.58 | 41.0 | 4.29e-01 | 92.8% | 81.3% |
| 3kxtA00 | 2.30.30.610 | Mainly Beta › Roll › SH3 type barrels. › Chromatin protein Cren7 | 0.58 | 38.0 | 4.30e-01 | 96.4% | 100.0% |
| 2xn1A01 | 2.70.98.60 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › alpha-galactosidase from lactobacil brevis | 0.58 | 47.0 | 3.22e-01 | 90.4% | 57.1% |
| 2cqaA01 | 2.40.50.360 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RuvBL1 DNA/RNA binding domain | 0.56 | 35.0 | 3.67e-01 | 86.7% | 70.3% |
| 6phxA01 | 2.70.98.60 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › alpha-galactosidase from lactobacil brevis | 0.56 | 46.0 | 3.19e-01 | 92.8% | 55.9% |
| 2l89A00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.55 | 39.0 | 3.59e-01 | 92.8% | 56.5% |
| 3mi6A01 | 2.70.98.60 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › alpha-galactosidase from lactobacil brevis | 0.55 | 46.0 | 3.11e-01 | 91.6% | 57.0% |
| 1tu5A01 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.55 | 44.0 | 4.11e-01 | 90.4% | 78.7% |
| 2h1eA02 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.55 | 35.0 | 4.13e-01 | 85.5% | 100.0% |
| 2i5hA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.54 | 33.0 | 3.51e-01 | 78.3% | 69.4% |
| 4e2xA01 | 6.20.50.110 | Special › Other non-globular › N-terminal domain of TfIIb › Methyltransferase, zinc-binding domain | 0.54 | 34.0 | 4.03e-01 | 73.5% | 100.0% |
| 2rajA02 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.54 | 39.0 | 3.41e-01 | 77.1% | 62.7% |
| 2oktA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.52 | 37.0 | 3.25e-01 | 74.7% | 53.1% |
| 2chrA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.52 | 38.0 | 3.30e-01 | 75.9% | 49.6% |
| 6grrA02 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 42.0 | 3.95e-01 | 91.6% | 73.3% |
| 4oxwA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.52 | 36.0 | 3.38e-01 | 73.5% | 75.5% |
| 1ksiA01 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 42.0 | 4.05e-01 | 91.6% | 78.1% |
| 3htxA01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.51 | 37.0 | 3.81e-01 | 86.7% | 84.2% |
| 3cpfA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.51 | 33.0 | 3.68e-01 | 83.1% | 87.7% |
ECOD (41)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5044742 | 375.1.1.95 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zinc_ribbon_13 | 0.69 | 45.0 | 5.04e-01 | 77.1% | 86.2% |
| 4927397 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.63 | 53.0 | 4.22e-01 | 91.6% | 69.1% |
| 3202298 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.63 | 47.0 | 3.99e-01 | 80.7% | 61.4% |
| 3694872 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.60 | 43.0 | 2.78e-01 | 77.1% | 21.5% |
| 140409 | 2.24.1.1 ↗ | beta barrels › OB-fold › probable receptor YhhM › probable receptor YhhM › DUF2500 | 0.60 | 42.0 | 4.11e-01 | 83.1% | 67.4% |
| 5006030 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.58 | 44.0 | 4.57e-01 | 83.1% | 88.0% |
| 3179728 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.58 | 47.0 | 3.14e-01 | 91.6% | 26.8% |
| 1148155 | 12.3.1.25 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_36N | 0.58 | 48.0 | 3.24e-01 | 91.6% | 54.7% |
| None | — | 0.58 | 47.0 | 3.25e-01 | 90.4% | 60.0% | |
| 4029528 | 4010.1.1.3 ↗ | a+b complex topology › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_3 | 0.57 | 46.0 | 3.40e-01 | 91.6% | 45.8% |
| 4644245 | 4.11.1.2 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 | 0.57 | 40.0 | 2.94e-01 | 74.7% | 31.3% |
| 4567929 | 5.1.4.169 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd | 0.56 | 46.0 | 3.02e-01 | 90.4% | 26.8% |
| 5001969 | 375.1.1.338 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF7479 | 0.56 | 36.0 | 3.72e-01 | 94.0% | 67.5% |
| 3484052 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.56 | 46.0 | 3.02e-01 | 91.6% | 34.7% |
| 3801858 | 252.1.1.0 ↗ | a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD | 0.56 | 31.0 | 3.46e-01 | 91.6% | 71.7% |
| 3913071 | 220.1.1.52 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › SNX17_FERM_C | 0.55 | 45.0 | 3.87e-01 | 91.6% | 74.3% |
| 5051439 | 2.1.1.42 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rep_fac-A_C | 0.55 | 41.0 | 3.49e-01 | 79.5% | 56.4% |
| 139039 | 12.3.1.25 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_36N | 0.55 | 46.0 | 3.08e-01 | 91.6% | 55.2% |
| 4422555 | 213.1.1.85 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1, Acetyltransf_13 | 0.55 | 38.0 | 2.91e-01 | 73.5% | 44.9% |
| 3184633 | 243.1.1.42 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › MMU163 | 0.54 | 41.0 | 3.41e-01 | 97.6% | 42.4% |
| 4043017 | 2.1.1.173 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RADX | 0.54 | 40.0 | 3.33e-01 | 80.7% | 49.4% |
| 3281554 | 375.1.1.41 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Methyltransf_13 | 0.54 | 37.0 | 4.09e-01 | 77.1% | 100.0% |
| 4967533 | 375.1.1.41 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Methyltransf_13 | 0.54 | 37.0 | 4.11e-01 | 73.5% | 100.0% |
| 3925078 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.54 | 43.0 | 2.91e-01 | 90.4% | 35.9% |
| 3251651 | 2003.1.2.18 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.53 | 45.0 | 2.75e-01 | 94.0% | 83.1% |
| 3989984 | 2484.1.1.66 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_3 | 0.53 | 37.0 | 3.27e-01 | 73.5% | 70.4% |
| 5074619 | 218.1.1.1 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N | 0.53 | 38.0 | 3.36e-01 | 74.7% | 57.5% |
| 4278171 | 375.1.1.41 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Methyltransf_13 | 0.53 | 36.0 | 3.94e-01 | 73.5% | 98.3% |
| 3792203 | 2.1.1.140 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SURF1 | 0.53 | 37.0 | 3.01e-01 | 72.3% | 41.2% |
| 3826141 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.53 | 41.0 | 4.05e-01 | 91.6% | 77.8% |
| 4314610 | 4272.1.1.1 ↗ | a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa | 0.53 | 43.0 | 3.37e-01 | 90.4% | 55.4% |
| 3928044 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 38.0 | 2.95e-01 | 77.1% | 94.7% |
| 3789364 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.52 | 39.0 | 2.58e-01 | 88.0% | 17.4% |
| 1886377 | 375.1.1.41 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Methyltransf_13 | 0.52 | 35.0 | 3.98e-01 | 72.3% | 98.3% |
| 3540088 | 220.1.1.184 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_S11IP | 0.52 | 43.0 | 3.80e-01 | 95.2% | 82.3% |
| 3420926 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.51 | 45.0 | 2.98e-01 | 98.8% | 81.1% |
| 3893274 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.51 | 35.0 | 2.98e-01 | 72.3% | 78.7% |
| 6427 | 243.5.1.1 ↗ | a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region › Cu_amine_oxidN2 | 0.50 | 39.0 | 3.81e-01 | 90.4% | 75.8% |
| 3472673 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.50 | 41.0 | 3.58e-01 | 94.0% | 55.7% |
| 3932593 | 2.1.1.179 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REV3_N | 0.50 | 35.0 | 3.28e-01 | 80.7% | 57.1% |
| 4029599 | 10.12.1.53 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy_3 | 0.50 | 38.0 | 2.61e-01 | 89.2% | 21.6% |