←Back to structures
rifoxyd1_full_scaffold_5_prodigal-single.1__X__X__00353
Bact-Virrifoxyd1_full_scaffold_5_prodigal-single.1__X__X__00353
Identity
- Kingdom:
- phage
Quality
72.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 49-151
Domain cluster:
representative
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1wrdA00 | 1.20.58.160 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.71 | 47.0 | 4.83e-01 | 88.3% | 70.4% |
| 7miqA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.69 | 45.0 | 4.47e-01 | 89.3% | 61.8% |
| 1avoB00 | 1.20.120.180 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Proteasome activator pa28, C-terminal domain | 0.67 | 46.0 | 4.17e-01 | 70.9% | 52.1% |
| 3mvuA00 | 1.20.910.10 | Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like | 0.62 | 49.0 | 3.84e-01 | 100.0% | 39.3% |
| 3r4iA02 | 6.10.140.960 | Special › Helix non-globular › Helix Hairpins › | 0.58 | 32.0 | 3.98e-01 | 89.3% | 91.7% |
| 8d7hD01 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.58 | 47.0 | 3.89e-01 | 100.0% | 50.9% |
| 2f22A00 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.57 | 45.0 | 4.03e-01 | 83.5% | 71.1% |
| 6lpfA01 | 1.10.730.20 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › | 0.56 | 44.0 | 3.74e-01 | 82.5% | 74.8% |
| 4ppuA00 | 1.10.590.10 | Mainly Alpha › Orthogonal Bundle › Chorismate Mutase, subunit A › Chorismate mutase, AroQ class superfamily, eukaryotic | 0.55 | 49.0 | 3.71e-01 | 98.1% | 77.6% |
| 1ni3A03 | 1.10.150.300 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Obg-related GTPase Ych/YyaF, coiled-coil domain | 0.53 | 37.0 | 3.90e-01 | 70.9% | 80.2% |
| 1c20A00 | 1.10.150.60 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › ARID DNA-binding domain | 0.52 | 32.0 | 3.01e-01 | 92.2% | 48.4% |
| 1rtwB00 | 1.20.910.10 | Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like | 0.52 | 42.0 | 3.37e-01 | 87.4% | 59.1% |
| 1yjgA00 | 1.20.120.240 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Lipoprotein, type 6 | 0.50 | 42.0 | 3.73e-01 | 95.1% | 77.1% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3180119 | 604.5.1.0 ↗ | alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) | 0.81 | 58.0 | 6.31e-01 | 88.3% | 88.2% |
| 3504347 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.71 | 53.0 | 5.55e-01 | 88.3% | 84.2% |
| 4098211 | 604.6.1.0 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain | 0.67 | 48.0 | 5.16e-01 | 87.4% | 85.6% |
| 4300205 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.66 | 48.0 | 4.87e-01 | 87.4% | 77.0% |
| 3998932 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.64 | 48.0 | 4.11e-01 | 80.6% | 66.5% |
| 3938199 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.64 | 52.0 | 4.39e-01 | 88.3% | 66.3% |
| 3171689 | 603.1.1.105 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF31021 | 0.63 | 51.0 | 4.88e-01 | 88.3% | 74.2% |
| 4019732 | 603.1.1.99 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF27021 | 0.63 | 46.0 | 4.29e-01 | 88.3% | 61.5% |
| 3605428 | 150.1.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin | 0.62 | 50.0 | 3.89e-01 | 86.4% | 45.3% |
| 3213470 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.62 | 45.0 | 4.58e-01 | 89.3% | 78.0% |
| 3593719 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.61 | 49.0 | 4.10e-01 | 88.3% | 49.2% |
| 3970997 | 1075.3.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC importer transmembrane domain fold › Type I ABC importer transmembrane domain fold › BPD_transp_1 | 0.59 | 43.0 | 3.31e-01 | 76.7% | 50.0% |
| 5051605 | 6155.1.1.0 ↗ | alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter | 0.58 | 48.0 | 3.95e-01 | 89.3% | 59.5% |
| 3264751 | 4044.1.1.0 ↗ | alpha bundles › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins | 0.57 | 46.0 | 4.11e-01 | 85.4% | 60.7% |
| 3592246 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.56 | 46.0 | 4.75e-01 | 95.1% | 93.7% |
| 3583937 | 3861.1.1.1 ↗ | alpha bundles › Mitochondrial translocator protein (TSPO) › Mitochondrial translocator protein (TSPO) › Mitochondrial translocator protein (TSPO) › TspO_MBR | 0.56 | 45.0 | 4.50e-01 | 99.0% | 87.6% |
| 3218028 | 180.1.1.1 ↗ | alpha bundles › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › PAP2 | 0.53 | 44.0 | 3.41e-01 | 92.2% | 66.0% |
| 4588680 | 5068.1.1.0 ↗ | alpha bundles › a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) › a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) › a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) | 0.50 | 40.0 | 3.50e-01 | 85.4% | 71.2% |