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rifoxyd1_full_scaffold_5_prodigal-single.1__X__X__00414
Bact-Virrifoxyd1_full_scaffold_5_prodigal-single.1__X__X__00414
Identity
- Kingdom:
- phage
Quality
59.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-104
Domain cluster:
representative
CATH (29)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3mwmA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.80 | 50.0 | 5.82e-01 | 81.4% | 86.7% |
| 1mzbA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.79 | 50.0 | 5.57e-01 | 82.4% | 80.5% |
| 3r0aA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.73 | 47.0 | 4.43e-01 | 82.4% | 55.0% |
| 2mh2A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.73 | 45.0 | 5.44e-01 | 79.4% | 100.0% |
| 1u5tB02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.72 | 45.0 | 5.29e-01 | 81.4% | 92.8% |
| 1xmkA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.72 | 45.0 | 4.96e-01 | 83.3% | 79.7% |
| 1p6rA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.71 | 43.0 | 4.72e-01 | 81.4% | 75.6% |
| 2co5A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.70 | 45.0 | 4.71e-01 | 82.4% | 71.7% |
| 5h20A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.69 | 47.0 | 4.74e-01 | 83.3% | 69.9% |
| 6qpqB00 | 1.10.10.580 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Structural maintenance of chromosome 1. Chain E | 0.69 | 47.0 | 5.24e-01 | 81.4% | 90.1% |
| 6abqB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.68 | 49.0 | 4.86e-01 | 86.3% | 71.7% |
| 3l9fA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 45.0 | 4.82e-01 | 83.3% | 80.9% |
| 1ub9A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.65 | 41.0 | 4.16e-01 | 80.4% | 64.0% |
| 4esbA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.64 | 45.0 | 4.57e-01 | 85.3% | 72.8% |
| 1ug8A00 | 3.30.1370.50 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain | 0.64 | 43.0 | 4.63e-01 | 83.3% | 81.6% |
| 1repC02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 45.0 | 4.68e-01 | 80.4% | 94.5% |
| 2bkyX00 | 3.30.110.20 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain | 0.58 | 44.0 | 4.77e-01 | 94.1% | 96.5% |
| 2v1xA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 43.0 | 4.25e-01 | 81.4% | 74.5% |
| 4ushA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 32.0 | 3.23e-01 | 92.2% | 56.3% |
| 5mmiU01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.55 | 32.0 | 3.52e-01 | 76.5% | 72.0% |
| 3e23A00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.53 | 45.0 | 3.66e-01 | 94.1% | 76.8% |
| 2l48A00 | 3.30.70.2030 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 28.0 | 3.07e-01 | 71.6% | 58.8% |
| 5qinA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.52 | 36.0 | 3.92e-01 | 94.1% | 85.9% |
| 3duwA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.52 | 44.0 | 3.49e-01 | 94.1% | 72.6% |
| 2gukA00 | 3.30.2190.10 | Alpha Beta › 2-Layer Sandwich › PG1857-like › PG1857-like | 0.52 | 42.0 | 4.15e-01 | 89.2% | 82.9% |
| 4bfeA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 28.0 | 3.07e-01 | 77.5% | 63.0% |
| 1dq3A04 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.51 | 39.0 | 3.80e-01 | 82.4% | 100.0% |
| 4v19R01 | 3.90.1030.10 | Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › Ribosomal protein L17 | 0.51 | 41.0 | 4.00e-01 | 86.3% | 96.4% |
| 2veaA02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.51 | 35.0 | 3.29e-01 | 72.5% | 90.0% |
ECOD (64)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3741636 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.76 | 48.0 | 5.03e-01 | 82.4% | 69.9% |
| 5019593 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.76 | 51.0 | 5.55e-01 | 85.3% | 83.5% |
| 5075915 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.74 | 49.0 | 5.33e-01 | 85.3% | 81.2% |
| 4932302 | 101.1.2.913 ↗ | alpha arrays › HTH › HTH › winged helix domain › WH_Lhr | 0.73 | 48.0 | 5.31e-01 | 84.3% | 85.0% |
| 4982868 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.73 | 49.0 | 5.25e-01 | 85.3% | 81.2% |
| 3613393 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.73 | 47.0 | 5.17e-01 | 83.3% | 82.5% |
| 5065027 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.73 | 50.0 | 4.41e-01 | 80.4% | 49.7% |
| 4996559 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.72 | 50.0 | 5.70e-01 | 82.4% | 97.3% |
| 5028531 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.72 | 47.0 | 4.94e-01 | 83.3% | 74.4% |
| 5051534 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.72 | 50.0 | 4.08e-01 | 80.4% | 39.5% |
| 5002609 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.72 | 55.0 | 5.75e-01 | 88.2% | 87.4% |
| 5042403 | 101.1.2.913 ↗ | alpha arrays › HTH › HTH › winged helix domain › WH_Lhr | 0.72 | 49.0 | 4.45e-01 | 85.3% | 52.6% |
| 4988334 | 101.1.2.913 ↗ | alpha arrays › HTH › HTH › winged helix domain › WH_Lhr | 0.71 | 47.0 | 4.95e-01 | 84.3% | 75.6% |
| 3597480 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.71 | 47.0 | 5.18e-01 | 82.4% | 85.0% |
| 3597985 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.71 | 46.0 | 5.08e-01 | 82.4% | 83.7% |
| 3787753 | 101.1.2.22 ↗ | alpha arrays › HTH › HTH › winged helix domain › PCI | 0.71 | 50.0 | 4.95e-01 | 85.3% | 70.5% |
| 5067344 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.70 | 45.0 | 4.57e-01 | 82.4% | 65.0% |
| 3743748 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.70 | 44.0 | 4.66e-01 | 83.3% | 71.1% |
| 3706397 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.70 | 44.0 | 5.29e-01 | 82.4% | 100.0% |
| 4028667 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.70 | 42.0 | 5.02e-01 | 83.3% | 93.8% |
| 4972208 | 101.1.2.57 ↗ | alpha arrays › HTH › HTH › winged helix domain › EAP30 | 0.69 | 49.0 | 5.23e-01 | 82.4% | 84.4% |
| 4978596 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.69 | 49.0 | 4.59e-01 | 83.3% | 60.0% |
| 4976218 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.69 | 49.0 | 4.62e-01 | 83.3% | 62.5% |
| 3716703 | 101.1.2.127 ↗ | alpha arrays › HTH › HTH › winged helix domain › Cullin_Nedd8 | 0.68 | 45.0 | 5.07e-01 | 82.4% | 92.0% |
| 5056655 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.68 | 41.0 | 4.56e-01 | 81.4% | 76.2% |
| 4959927 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.68 | 46.0 | 3.86e-01 | 81.4% | 41.8% |
| 5045983 | 101.1.2.136 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_20 | 0.68 | 48.0 | 4.90e-01 | 80.4% | 76.0% |
| 4990701 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.67 | 48.0 | 4.46e-01 | 85.3% | 58.5% |
| 3582030 | 2007.2.3.21 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase, PTP-SAK | 0.67 | 49.0 | 3.44e-01 | 75.5% | 70.0% |
| 3744213 | 101.1.2.57 ↗ | alpha arrays › HTH › HTH › winged helix domain › EAP30 | 0.67 | 48.0 | 4.31e-01 | 82.4% | 54.3% |
| 4946714 | 101.1.2.141 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_24 | 0.67 | 54.0 | 5.68e-01 | 85.3% | 97.8% |
| 4944171 | 101.1.2.57 ↗ | alpha arrays › HTH › HTH › winged helix domain › EAP30 | 0.65 | 54.0 | 4.82e-01 | 88.2% | 64.3% |
| 5061722 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.65 | 48.0 | 4.63e-01 | 84.3% | 69.0% |
| 5035395 | 101.1.2.31 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha | 0.64 | 41.0 | 3.47e-01 | 80.4% | 38.2% |
| 4943632 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.64 | 40.0 | 3.82e-01 | 80.4% | 53.3% |
| 2898918 | 101.1.2.90 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_9 | 0.63 | 41.0 | 4.03e-01 | 80.4% | 61.1% |
| 4979815 | 101.1.2.136 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_20 | 0.63 | 41.0 | 4.29e-01 | 80.4% | 73.3% |
| 4947850 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.62 | 47.0 | 4.67e-01 | 80.4% | 81.0% |
| 3443787 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.62 | 43.0 | 4.60e-01 | 81.4% | 84.7% |
| 4955504 | 101.1.2.955 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF30799 | 0.62 | 49.0 | 4.37e-01 | 83.3% | 72.1% |
| 3332006 | 101.1.2.245 ↗ | alpha arrays › HTH › HTH › winged helix domain › PORR | 0.61 | 41.0 | 3.98e-01 | 83.3% | 60.0% |
| 4961794 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.60 | 45.0 | 4.20e-01 | 81.4% | 64.8% |
| 3585256 | 304.28.1.9 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › Patched | 0.60 | 42.0 | 2.47e-01 | 72.5% | 56.2% |
| 4312327 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.59 | 50.0 | 4.42e-01 | 92.2% | 81.1% |
| 3648804 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.59 | 45.0 | 4.33e-01 | 81.4% | 73.0% |
| 3407922 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.59 | 48.0 | 4.44e-01 | 88.2% | 83.8% |
| 3579786 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.58 | 44.0 | 4.49e-01 | 82.4% | 84.7% |
| 3228509 | 101.1.4.12 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › MSC | 0.57 | 44.0 | 4.03e-01 | 83.3% | 62.2% |
| 5078768 | 101.1.2.819 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF27231 | 0.57 | 44.0 | 3.82e-01 | 82.4% | 61.9% |
| 1293857 | 108.1.1.4 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.57 | 32.0 | 3.72e-01 | 89.2% | 76.7% |
| 5064968 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 44.0 | 4.10e-01 | 82.4% | 66.9% |
| 3706721 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 39.0 | 4.39e-01 | 83.3% | 97.3% |
| 3622588 | 101.1.2.24 ↗ | alpha arrays › HTH › HTH › winged helix domain › MAGE | 0.56 | 44.0 | 3.41e-01 | 86.3% | 58.7% |
| 3609469 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 41.0 | 4.23e-01 | 88.2% | 84.2% |
| 3386835 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 47.0 | 4.06e-01 | 92.2% | 83.7% |
| 5071634 | 247.1.1.1 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B | 0.55 | 43.0 | 3.10e-01 | 85.3% | 73.4% |
| 3783757 | 278.1.1.1 ↗ | a+b complex topology › Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain › Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain › Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain › FAD_binding_2 | 0.54 | 46.0 | 3.84e-01 | 93.1% | 87.2% |
| 3739375 | 101.1.2.24 ↗ | alpha arrays › HTH › HTH › winged helix domain › MAGE | 0.54 | 42.0 | 3.95e-01 | 83.3% | 89.6% |
| 3620102 | 5067.1.1.3 ↗ | alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Patched | 0.53 | 40.0 | 2.36e-01 | 80.4% | 99.1% |
| 3476800 | 328.1.1.0 ↗ | a+b two layers › IF3-like › AlbA-like › AlbA-like | 0.51 | 44.0 | 4.20e-01 | 94.1% | 84.2% |
| 3971323 | 4052.1.1.0 ↗ | beta complex topology › Acyl-CoA dehydrogenase middle domain-like › Acyl-CoA dehydrogenase middle domain-like › Acyl-CoA dehydrogenase middle domain-like | 0.51 | 32.0 | 3.16e-01 | 98.0% | 57.3% |
| 4993483 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.51 | 38.0 | 3.86e-01 | 82.4% | 100.0% |
| 4607326 | 305.1.1.1 ↗ | a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L | 0.51 | 32.0 | 3.24e-01 | 94.1% | 62.9% |
| 3705453 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.50 | 41.0 | 3.19e-01 | 92.2% | 58.4% |
D2
high
residues 147-228