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rifoxyd1_full_scaffold_5_prodigal-single.1__X__X__00420
Bact-Virrifoxyd1_full_scaffold_5_prodigal-single.1__X__X__00420
Identity
- Kingdom:
- phage
Quality
75.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-159
Domain cluster:
rep: BML_coassembly_scaffold_50_prodigal-single.1__X__X__00038__D347-509
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1iuhA00 | 3.90.1140.10 | Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase | 0.80 | 75.0 | 7.11e-01 | 99.4% | 97.3% |
| 1vdxA00 | 3.90.1140.10 | Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase | 0.80 | 75.0 | 7.05e-01 | 99.4% | 98.4% |
| 2d4gA00 | 3.90.1140.10 | Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase | 0.80 | 75.0 | 7.31e-01 | 98.7% | 98.8% |
| 4h7wA00 | 3.90.1140.10 | Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase | 0.79 | 74.0 | 6.94e-01 | 100.0% | 98.4% |
| 4qakA00 | 3.90.1140.10 | Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase | 0.78 | 74.0 | 7.13e-01 | 100.0% | 98.2% |
| 4cgyA03 | 2.70.20.10 | Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Topoisomerase I, domain 3 | 0.55 | 41.0 | 4.48e-01 | 95.5% | 96.1% |
| 3k59A01 | 2.40.50.590 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › DNA polymerase B, N domain, beta-barrel | 0.54 | 25.0 | 3.25e-01 | 91.7% | 76.5% |
ECOD (51)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5011802 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.83 | 78.0 | 6.98e-01 | 98.7% | 84.9% |
| 3397353 | 264.1.1.6 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › HVSL | 0.83 | 79.0 | 7.40e-01 | 100.0% | 98.4% |
| 3479830 | 264.1.1.0 ↗ | beta barrels › LigT-like › LigT-related › LigT-related | 0.83 | 78.0 | 7.20e-01 | 100.0% | 95.9% |
| 4949121 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.81 | 77.0 | 7.33e-01 | 100.0% | 99.4% |
| 4453123 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.81 | 75.0 | 7.16e-01 | 98.1% | 98.3% |
| 2322578 | 264.1.1.6 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › HVSL | 0.81 | 77.0 | 7.19e-01 | 100.0% | 97.8% |
| 4447743 | 264.1.1.6 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › HVSL | 0.81 | 76.0 | 6.51e-01 | 100.0% | 96.2% |
| 5039548 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.81 | 77.0 | 7.29e-01 | 100.0% | 98.9% |
| 3464521 | 264.1.1.7 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS | 0.81 | 75.0 | 6.60e-01 | 98.7% | 95.0% |
| 5042461 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.81 | 76.0 | 7.12e-01 | 100.0% | 98.4% |
| 5051264 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.81 | 75.0 | 7.22e-01 | 98.7% | 98.3% |
| 3179394 | 264.1.1.6 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › HVSL | 0.81 | 75.0 | 6.39e-01 | 98.7% | 97.9% |
| 3181856 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.81 | 76.0 | 6.64e-01 | 100.0% | 97.8% |
| 5061864 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.81 | 74.0 | 6.97e-01 | 96.8% | 94.6% |
| None | — | 0.81 | 75.0 | 7.17e-01 | 99.4% | 98.9% | |
| 3205096 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.81 | 76.0 | 7.15e-01 | 100.0% | 98.4% |
| 5067404 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.80 | 76.0 | 7.15e-01 | 100.0% | 97.8% |
| 4946449 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.80 | 76.0 | 7.14e-01 | 100.0% | 98.9% |
| 277 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.80 | 75.0 | 7.12e-01 | 99.4% | 97.3% |
| 5019632 | 264.1.1.0 ↗ | beta barrels › LigT-like › LigT-related › LigT-related | 0.80 | 75.0 | 6.66e-01 | 100.0% | 95.9% |
| 3412490 | 264.1.1.7 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS | 0.80 | 76.0 | 6.84e-01 | 100.0% | 98.5% |
| 4956981 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.80 | 76.0 | 7.13e-01 | 100.0% | 98.4% |
| 4025967 | 264.1.1.6 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › HVSL | 0.80 | 75.0 | 6.32e-01 | 100.0% | 98.4% |
| 3216833 | 264.1.1.7 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS | 0.80 | 75.0 | 6.61e-01 | 99.4% | 99.1% |
| 4994515 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.80 | 75.0 | 7.08e-01 | 98.7% | 98.9% |
| 4930187 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.80 | 75.0 | 7.01e-01 | 100.0% | 97.9% |
| None | — | 0.80 | 75.0 | 7.05e-01 | 99.4% | 98.4% | |
| 3674751 | 264.1.1.6 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › HVSL | 0.80 | 75.0 | 6.56e-01 | 99.4% | 98.2% |
| 4965540 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.79 | 74.0 | 7.00e-01 | 99.4% | 99.5% |
| 4026533 | 264.1.1.7 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS | 0.79 | 75.0 | 6.81e-01 | 100.0% | 97.5% |
| 4942504 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.79 | 74.0 | 7.02e-01 | 99.4% | 98.9% |
| 3731250 | 264.1.1.6 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › HVSL | 0.79 | 74.0 | 6.78e-01 | 100.0% | 97.5% |
| 3233020 | 264.1.1.7 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS | 0.79 | 74.0 | 6.86e-01 | 99.4% | 98.4% |
| 3698720 | 264.1.1.7 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS | 0.79 | 73.0 | 6.44e-01 | 99.4% | 87.9% |
| 3270425 | 264.1.1.6 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › HVSL | 0.79 | 74.0 | 6.80e-01 | 99.4% | 99.0% |
| 4982807 | 264.1.1.7 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS | 0.79 | 74.0 | 6.97e-01 | 100.0% | 99.5% |
| 3739681 | 264.1.1.6 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › HVSL | 0.79 | 73.0 | 6.70e-01 | 99.4% | 98.5% |
| 3894760 | 264.1.1.7 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS | 0.79 | 74.0 | 6.78e-01 | 100.0% | 97.4% |
| None | — | 0.78 | 74.0 | 6.95e-01 | 100.0% | 98.9% | |
| 5029239 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.78 | 74.0 | 7.03e-01 | 99.4% | 98.9% |
| 4952280 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.78 | 73.0 | 6.89e-01 | 98.1% | 99.4% |
| 3339513 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.78 | 73.0 | 6.99e-01 | 98.7% | 99.4% |
| None | — | 0.78 | 73.0 | 7.02e-01 | 99.4% | 100.0% | |
| 2773887 | 264.1.1.6 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › HVSL | 0.77 | 72.0 | 6.40e-01 | 100.0% | 96.8% |
| None | — | 0.77 | 69.0 | 6.67e-01 | 93.6% | 99.4% | |
| 5036038 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.77 | 72.0 | 6.85e-01 | 99.4% | 100.0% |
| 4972958 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.77 | 72.0 | 6.81e-01 | 100.0% | 99.5% |
| 4929565 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.76 | 71.0 | 6.72e-01 | 99.4% | 98.9% |
| 3250014 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.75 | 63.0 | 6.62e-01 | 98.7% | 97.1% |
| 5062926 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.75 | 70.0 | 6.90e-01 | 99.4% | 97.6% |
| 3388201 | 264.2.1.1 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain › Topoisom_bac | 0.52 | 41.0 | 4.40e-01 | 95.5% | 99.2% |
D2
high
residues 166-233