←Back to structures
rifoxyd1_full_scaffold_5_prodigal-single.1__X__X__00442
Bact-Virrifoxyd1_full_scaffold_5_prodigal-single.1__X__X__00442
Identity
- Kingdom:
- phage
Quality
61.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 32-85
Domain cluster:
representative
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1t3dA01 | 1.10.3130.10 | Mainly Alpha › Orthogonal Bundle › serine acetyltransferase, domain 1 › serine acetyltransferase, domain 1 | 0.66 | 46.0 | 3.48e-01 | 75.9% | 30.7% |
| 4o1gA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.65 | 53.0 | 3.28e-01 | 98.1% | 15.8% |
| 2va8A04 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.64 | 51.0 | 5.12e-01 | 96.3% | 85.7% |
| 3cl3A02 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.61 | 49.0 | 4.26e-01 | 94.4% | 79.5% |
| 6tmfT00 | 1.10.60.20 | Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Ribosomal protein S17 | 0.60 | 50.0 | 4.79e-01 | 96.3% | 81.2% |
| 2xzmV01 | 1.10.60.20 | Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Ribosomal protein S17 | 0.60 | 47.0 | 4.66e-01 | 100.0% | 83.6% |
| 3qqaA02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.60 | 52.0 | 3.89e-01 | 100.0% | 66.7% |
| 3osnA03 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.59 | 45.0 | 4.09e-01 | 94.4% | 61.0% |
| 2q0oC00 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.58 | 47.0 | 3.97e-01 | 87.0% | 57.0% |
| 3pe0A01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.58 | 45.0 | 3.68e-01 | 85.2% | 46.5% |
| 2pmrA00 | 1.20.1270.90 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like | 0.57 | 43.0 | 3.83e-01 | 81.5% | 59.2% |
| 4hwdD00 | 1.20.58.120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain | 0.57 | 50.0 | 4.24e-01 | 100.0% | 80.0% |
| 1a7vA00 | 1.20.120.10 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c/b562 | 0.56 | 43.0 | 3.25e-01 | 100.0% | 35.2% |
| 6umqA01 | 1.20.930.60 | Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › | 0.55 | 43.0 | 3.41e-01 | 88.9% | 40.0% |
| 7dniC02 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.51 | 39.0 | 3.48e-01 | 96.3% | 54.3% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3595345 | 148.1.1.0 ↗ | alpha arrays › Histone-like › Histone-related › Histone | 0.69 | 57.0 | 4.85e-01 | 92.6% | 61.1% |
| 5069614 | 101.1.17.0 ↗ | alpha arrays › HTH › HTH › FF domain | 0.62 | 51.0 | 5.10e-01 | 100.0% | 92.7% |
| 5068083 | 101.1.17.0 ↗ | alpha arrays › HTH › HTH › FF domain | 0.62 | 51.0 | 5.16e-01 | 100.0% | 92.7% |
| 2141248 | 531.3.1.1 ↗ | alpha arrays › Domains of FliG › N-terminal domain of FliG › N-terminal domain of FliG › FliG_N | 0.61 | 40.0 | 3.32e-01 | 70.4% | 35.2% |
| 1007485 | 604.3.1.1 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › BAG | 0.57 | 50.0 | 4.24e-01 | 100.0% | 80.0% |
| 4026202 | 192.15.1.0 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains | 0.56 | 44.0 | 3.93e-01 | 100.0% | 87.8% |
| 3531423 | 5106.1.1.14 ↗ | extended segments › PetG subunit of the cytochrome b6f complex › PetG subunit of the cytochrome b6f complex › PetG subunit of the cytochrome b6f complex › TMEM174 | 0.55 | 42.0 | 4.24e-01 | 88.9% | 80.0% |
| 3751836 | 3134.1.1.1 ↗ | a+b two layers › N-terminal domain of DC-UbP › N-terminal domain of DC-UbP › N-terminal domain of DC-UbP › UBD | 0.52 | 40.0 | 3.51e-01 | 83.3% | 96.5% |