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rifoxyd1_full_scaffold_5_prodigal-single.1__X__X__00477
Bact-Virrifoxyd1_full_scaffold_5_prodigal-single.1__X__X__00477
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-84
Domain cluster:
representative
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3j7yD02 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.70 | 53.0 | 5.33e-01 | 81.0% | 81.5% |
| 1vwxA02 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.66 | 50.0 | 5.02e-01 | 81.0% | 85.0% |
| 1txqA00 | 2.30.30.190 | Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain | 0.64 | 47.0 | 4.83e-01 | 77.2% | 100.0% |
| 7razA01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.63 | 44.0 | 4.32e-01 | 74.7% | 68.2% |
| 2dk3A00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.61 | 45.0 | 4.42e-01 | 78.5% | 82.6% |
| 2hx0A01 | 3.30.1330.80 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 | 0.59 | 44.0 | 3.69e-01 | 78.5% | 66.7% |
| 2k57A00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.58 | 38.0 | 4.34e-01 | 70.9% | 96.4% |
| 3uoxB01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.56 | 38.0 | 2.64e-01 | 70.9% | 45.1% |
| 3pnnA00 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.55 | 42.0 | 2.92e-01 | 84.8% | 32.6% |
| 2vjwA00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.52 | 39.0 | 3.37e-01 | 83.5% | 88.4% |
| 1dzkA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.52 | 39.0 | 3.27e-01 | 82.3% | 98.6% |
| 3h27A00 | 3.50.50.100 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › | 0.52 | 36.0 | 2.30e-01 | 73.4% | 55.7% |
| 4jcwA02 | 2.60.40.760 | Mainly Beta › Sandwich › Immunoglobulin-like › Expansin, cellulose-binding-like domain | 0.51 | 35.0 | 3.40e-01 | 72.2% | 88.9% |
| 3d30A02 | 2.60.40.760 | Mainly Beta › Sandwich › Immunoglobulin-like › Expansin, cellulose-binding-like domain | 0.51 | 35.0 | 3.37e-01 | 72.2% | 94.7% |
| 5umsA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.51 | 39.0 | 3.62e-01 | 83.5% | 90.2% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4027422 | 4.1.1.33 ↗ | beta barrels › SH3 › SH3 › SH3 › Myosin_N | 0.72 | 48.0 | 5.54e-01 | 74.7% | 98.2% |
| 5036592 | 4.17.1.1 ↗ | beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N | 0.68 | 50.0 | 5.15e-01 | 78.5% | 93.3% |
| 4327595 | 4.1.1.402 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF2761 | 0.67 | 48.0 | 4.58e-01 | 75.9% | 71.6% |
| 3481770 | 4.1.1.220 ↗ | beta barrels › SH3 › SH3 › SH3 › BAHCC1-like_Tudor | 0.67 | 55.0 | 5.55e-01 | 89.9% | 92.5% |
| 3577864 | 4.1.1.33 ↗ | beta barrels › SH3 › SH3 › SH3 › Myosin_N | 0.66 | 41.0 | 4.07e-01 | 72.2% | 58.8% |
| 4931472 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.62 | 47.0 | 3.51e-01 | 81.0% | 51.5% |
| 4968172 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.62 | 47.0 | 3.41e-01 | 81.0% | 48.2% |
| 5004339 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.61 | 46.0 | 3.62e-01 | 81.0% | 62.5% |
| 5025916 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.61 | 46.0 | 3.78e-01 | 81.0% | 73.1% |
| 4275696 | 4.1.1.38 ↗ | beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C | 0.60 | 55.0 | 4.62e-01 | 100.0% | 96.2% |
| 3993968 | 4.1.1.38 ↗ | beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C | 0.60 | 55.0 | 4.46e-01 | 100.0% | 69.0% |
| 3770448 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.59 | 41.0 | 3.24e-01 | 72.2% | 74.1% |
| 4213135 | 4.1.1.38 ↗ | beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C | 0.59 | 53.0 | 4.56e-01 | 100.0% | 74.2% |
| 3794445 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.58 | 44.0 | 4.44e-01 | 81.0% | 92.5% |
| 5027607 | 330.7.1.2 ↗ | a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain › HicA_toxin | 0.56 | 33.0 | 3.38e-01 | 70.9% | 60.0% |
| 4573193 | 2005.1.1.17 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1f | 0.55 | 40.0 | 2.67e-01 | 77.2% | 25.1% |
| 4313114 | 378.1.1.30 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › PF30178 | 0.54 | 37.0 | 3.26e-01 | 70.9% | 62.5% |
| 4944335 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.51 | 37.0 | 3.50e-01 | 75.9% | 95.7% |
| 4981525 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.50 | 36.0 | 3.65e-01 | 75.9% | 82.3% |