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rifoxyd1_full_scaffold_5_prodigal-single.1__X__X__00479
Bact-Virrifoxyd1_full_scaffold_5_prodigal-single.1__X__X__00479
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 15-139
Domain cluster:
rep: OY978796.1__X__K45PH128C2_LOCUS67__00067__D2-110
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF26675.1 best | DUF8224 | 109.2 | 2.70e-31 | 94.4% | 95.3% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4998143 | 2004.1.3.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR | 0.56 | 42.0 | 3.55e-01 | 79.2% | 87.4% |
| 3806764 | 150.1.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin | 0.53 | 39.0 | 3.46e-01 | 79.2% | 84.0% |
D2
high
residues 153-266
Domain cluster:
representative
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1w2yA00 | 1.10.4010.10 | Mainly Alpha › Orthogonal Bundle › all-alpha NTP pyrophosphatase fold › Type II deoxyuridine triphosphatase | 0.67 | 58.0 | 4.67e-01 | 96.5% | 90.3% |
| 3zciA00 | 1.20.58.1660 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.61 | 42.0 | 3.59e-01 | 71.9% | 74.3% |
| 1u5kA02 | 1.20.1440.120 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Recombination protein O, C-terminal domain | 0.60 | 37.0 | 3.62e-01 | 85.1% | 55.2% |
| 3am6A00 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.59 | 47.0 | 3.77e-01 | 85.1% | 92.4% |
| 5figA00 | 1.20.1270.360 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.59 | 41.0 | 4.35e-01 | 71.1% | 85.0% |
| 3qybA02 | 1.10.8.270 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › putative rabgap domain of human tbc1 domain family member 14 like domains | 0.59 | 35.0 | 3.77e-01 | 88.6% | 69.9% |
| 4fjvA02 | 1.20.1300.20 | Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Peptidase C65 Otubain, subdomain 2 | 0.58 | 51.0 | 4.75e-01 | 96.5% | 83.3% |
| 2rldA00 | 1.20.1440.60 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence | 0.58 | 40.0 | 4.03e-01 | 71.1% | 78.9% |
| 3mpxA01 | 1.20.900.10 | Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain | 0.57 | 44.0 | 3.63e-01 | 82.5% | 59.7% |
| 4fm3A00 | 1.20.1270.390 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.56 | 35.0 | 3.83e-01 | 84.2% | 74.7% |
| 2fiyA00 | 3.90.1670.10 | Alpha Beta › Alpha-Beta Complex › FdhE-like fold › FdhE-like domain | 0.56 | 44.0 | 3.33e-01 | 83.3% | 91.6% |
| 2yguC00 | 1.10.238.190 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › | 0.56 | 41.0 | 4.07e-01 | 76.3% | 76.3% |
| 1y4cA03 | 1.20.120.660 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › IL-4 antagonist (De novo design) like domain | 0.55 | 43.0 | 4.36e-01 | 85.1% | 83.2% |
| 3f4mA00 | 1.20.1440.160 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Tumor necrosis factor alpha-induced protein 8-like | 0.55 | 38.0 | 3.46e-01 | 70.2% | 91.6% |
| 1aepA00 | 1.20.120.20 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein | 0.54 | 41.0 | 3.74e-01 | 79.8% | 83.7% |
| 4akgA04 | 1.20.58.1120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Dynein motor heavy chain, linker domain, subdomain 4 | 0.54 | 46.0 | 4.12e-01 | 90.4% | 71.8% |
| 1li5A02 | 1.20.120.640 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | 0.54 | 34.0 | 3.74e-01 | 87.7% | 81.6% |
| 5dkoA02 | 1.10.3900.10 | Mainly Alpha › Orthogonal Bundle › YacF-like › YacF-like | 0.53 | 41.0 | 3.64e-01 | 83.3% | 80.8% |
| 4od4A01 | 1.10.357.140 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › UbiA prenyltransferase | 0.52 | 37.0 | 3.36e-01 | 72.8% | 89.1% |
| 1kxpD02 | 1.10.246.10 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.51 | 37.0 | 4.19e-01 | 86.0% | 97.7% |
| 3lzhA02 | 3.90.1200.10 | Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe | 0.51 | 40.0 | 3.37e-01 | 83.3% | 77.7% |
| 4irlB02 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.50 | 32.0 | 3.47e-01 | 76.3% | 77.4% |
| 8d3mA02 | 1.20.120.920 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain | 0.50 | 42.0 | 3.28e-01 | 100.0% | 42.5% |
| 4jkvB02 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.50 | 43.0 | 3.08e-01 | 93.9% | 84.5% |
| 1dqeA00 | 1.10.238.20 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain | 0.50 | 35.0 | 3.36e-01 | 71.9% | 67.2% |
ECOD (27)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3590383 | 5082.1.1.1 ↗ | alpha bundles › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation_efflux | 0.67 | 45.0 | 3.74e-01 | 70.2% | 52.5% |
| 3976109 | 632.7.1.61 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › BREX_BrxC_helical | 0.63 | 45.0 | 4.67e-01 | 74.6% | 89.5% |
| 2464246 | 5000.3.1.1 ↗ | alpha arrays › Toxins' membrane translocation domains › Bcl-2 inhibitors of programmed cell death › Bcl-2 inhibitors of programmed cell death › Bcl-2 | 0.62 | 48.0 | 4.39e-01 | 80.7% | 98.6% |
| 3776006 | 4193.1.1.1 ↗ | alpha arrays › RUN domain › RUN domain › RUN domain › RUN | 0.62 | 50.0 | 4.31e-01 | 87.7% | 69.2% |
| 3793073 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.62 | 42.0 | 4.29e-01 | 84.2% | 70.9% |
| 3261105 | 632.11.1.2 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like › DOCK_N | 0.59 | 39.0 | 4.25e-01 | 71.1% | 80.0% |
| 5053993 | 632.7.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain | 0.58 | 39.0 | 4.22e-01 | 88.6% | 81.1% |
| 3955772 | 632.15.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) | 0.58 | 38.0 | 4.23e-01 | 86.0% | 85.6% |
| 3514777 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.58 | 44.0 | 4.09e-01 | 81.6% | 64.3% |
| 3808289 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.58 | 42.0 | 4.49e-01 | 84.2% | 90.5% |
| 2723199 | 3455.1.1.0 ↗ | alpha arrays › WY-domain in RXLR effectors › WY-domain in RXLR effectors › WY-domain in RXLR effectors | 0.57 | 44.0 | 4.37e-01 | 83.3% | 79.3% |
| 3183029 | 601.19.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein | 0.56 | 45.0 | 3.99e-01 | 84.2% | 75.6% |
| 3695305 | 192.29.1.148 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › DUF3433 | 0.55 | 45.0 | 4.14e-01 | 87.7% | 88.7% |
| 3513623 | 106.1.1.1 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like › Globin | 0.55 | 41.0 | 3.67e-01 | 77.2% | 77.0% |
| 4981709 | 150.1.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin | 0.55 | 39.0 | 3.66e-01 | 71.9% | 64.3% |
| 5079439 | 601.1.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin | 0.55 | 41.0 | 4.27e-01 | 90.4% | 85.7% |
| 4196088 | 150.1.1.175 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › BREX_BrxC_helical | 0.55 | 43.0 | 4.51e-01 | 91.2% | 92.4% |
| 3212799 | 632.1.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain | 0.55 | 37.0 | 4.19e-01 | 86.8% | 92.9% |
| 3189966 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.55 | 38.0 | 2.92e-01 | 71.9% | 68.7% |
| 3391989 | 7015.1.1.2 ↗ | alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › XK-related | 0.55 | 44.0 | 3.15e-01 | 86.8% | 76.9% |
| 5057879 | 5054.1.1.8 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 | 0.54 | 28.0 | 2.78e-01 | 87.7% | 45.0% |
| 3756 | 601.20.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Apolipophorin-III › Apolipophorin-III | 0.54 | 41.0 | 3.74e-01 | 79.8% | 83.7% |
| 3974363 | 5059.1.1.1 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA | 0.54 | 41.0 | 3.06e-01 | 79.8% | 71.9% |
| 3289622 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.53 | 38.0 | 3.77e-01 | 72.8% | 77.5% |
| 4937297 | 632.7.1.1 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › HSP70 | 0.53 | 38.0 | 4.06e-01 | 89.5% | 85.0% |
| 3272866 | 611.8.1.0 ↗ | alpha bundles › N-cbl like › C-terminal domain of E3 ubiquitin-protein ligase ARIH1 › C-terminal domain of E3 ubiquitin-protein ligase ARIH1 | 0.53 | 43.0 | 3.78e-01 | 86.8% | 58.8% |
| 3426522 | 3562.1.1.11 ↗ | alpha bundles › Calcium release-activated calcium channel protein 1 › Calcium release-activated calcium channel protein 1 › Calcium release-activated calcium channel protein 1 › PGG | 0.53 | 43.0 | 4.08e-01 | 87.7% | 95.6% |
D3
medium
residues 301-314_375-501
Domain cluster:
representative
D4
medium
residues 337-374_502-529
Domain cluster:
rep: NC_049430.1__YP_009879953.1__HYP57_gp074__00074__D338-366_634-659
CATH (53)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2xglA00 | 3.10.450.300 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › YebF/Colicin-M immunity protein | 0.64 | 46.0 | 4.18e-01 | 77.3% | 76.9% |
| 1y8xB00 | 3.10.290.20 | Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › Ubiquitin-like 2 activating enzyme e1b. Chain: B, domain 3 | 0.63 | 48.0 | 4.33e-01 | 83.3% | 100.0% |
| 1v4nA00 | 3.40.50.1580 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain | 0.63 | 49.0 | 3.29e-01 | 95.5% | 21.4% |
| 4p04A01 | 2.60.40.3100 | Mainly Beta › Sandwich › Immunoglobulin-like › Arylsulphate sulphotransferase monomer, N-terminal domain | 0.62 | 46.0 | 4.01e-01 | 80.3% | 85.8% |
| 1v43A03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.62 | 44.0 | 4.49e-01 | 81.8% | 76.6% |
| 1tsjA00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.61 | 49.0 | 4.06e-01 | 89.4% | 94.0% |
| 3oa4A01 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.60 | 45.0 | 3.70e-01 | 90.9% | 42.1% |
| 7qprA02 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.59 | 50.0 | 4.06e-01 | 97.0% | 51.1% |
| 8gn6A01 | 2.120.10.10 | Mainly Beta › 6 Propeller › Neuraminidase › | 0.59 | 43.0 | 2.73e-01 | 77.3% | 18.6% |
| 1xeaA02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.59 | 43.0 | 3.13e-01 | 78.8% | 75.5% |
| 1r9cA00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.59 | 50.0 | 4.07e-01 | 95.5% | 82.4% |
| 1tcvA00 | 3.40.50.1580 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain | 0.58 | 47.0 | 3.14e-01 | 93.9% | 21.8% |
| 3b77A01 | 2.30.29.50 | Mainly Beta › Roll › PH-domain like › Bacterial Pleckstrin homology domain | 0.58 | 43.0 | 3.75e-01 | 78.8% | 100.0% |
| 1kyfA01 | 2.60.40.1230 | Mainly Beta › Sandwich › Immunoglobulin-like › Gamma-adaptin ear (GAE) domain | 0.58 | 43.0 | 3.52e-01 | 81.8% | 89.6% |
| 4aq1A05 | 2.60.40.3460 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.58 | 49.0 | 4.18e-01 | 95.5% | 94.5% |
| 2dd8S01 | 3.30.70.1840 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Spike protein, C-terminal core receptor binding subdomain | 0.58 | 47.0 | 3.73e-01 | 92.4% | 89.4% |
| 3o4oB01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 49.0 | 4.17e-01 | 98.5% | 99.1% |
| 3e82E02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.57 | 45.0 | 3.30e-01 | 90.9% | 36.0% |
| 3rmuA00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.56 | 42.0 | 3.44e-01 | 89.4% | 41.0% |
| 1h3gA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 41.0 | 3.78e-01 | 80.3% | 94.4% |
| 2xotA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 40.0 | 3.72e-01 | 77.3% | 91.9% |
| 4hadB02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.55 | 46.0 | 3.34e-01 | 93.9% | 48.2% |
| 3uuwB02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.55 | 44.0 | 3.30e-01 | 90.9% | 41.3% |
| 8gsxA01 | 2.60.40.740 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 41.0 | 3.20e-01 | 80.3% | 98.7% |
| 2fcbA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 41.0 | 3.75e-01 | 80.3% | 92.0% |
| 4bfeC01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 41.0 | 3.60e-01 | 83.3% | 96.2% |
| 3gdoA02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.55 | 44.0 | 3.19e-01 | 90.9% | 37.2% |
| 2dl9A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 39.0 | 3.63e-01 | 78.8% | 92.1% |
| 1vk0A00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.54 | 46.0 | 3.37e-01 | 98.5% | 39.5% |
| 2kkqA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 39.0 | 3.34e-01 | 78.8% | 73.3% |
| 2jtdA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 40.0 | 3.33e-01 | 80.3% | 74.6% |
| 3rbsA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 39.0 | 3.61e-01 | 78.8% | 92.0% |
| 3c8mA02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.54 | 37.0 | 2.93e-01 | 74.2% | 99.4% |
| 4hbqA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 38.0 | 3.51e-01 | 77.3% | 92.2% |
| 3t2lA02 | 2.60.40.2630 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.53 | 39.0 | 3.05e-01 | 77.3% | 84.2% |
| 5kvsA02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.53 | 43.0 | 3.34e-01 | 92.4% | 46.3% |
| 5wy8B02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 41.0 | 3.73e-01 | 87.9% | 93.9% |
| 7y6oA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 39.0 | 3.58e-01 | 80.3% | 93.3% |
| 2a38A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 38.0 | 3.42e-01 | 78.8% | 86.5% |
| 1cwvA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 38.0 | 3.45e-01 | 78.8% | 93.5% |
| 6w5yC01 | 3.90.310.10 | Alpha Beta › Alpha-Beta Complex › Viral Glycoprotein Gp70 › ENV polyprotein, receptor-binding domain | 0.52 | 38.0 | 3.11e-01 | 81.8% | 100.0% |
| 2if7A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 38.0 | 3.41e-01 | 81.8% | 96.2% |
| 2x1wL02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 39.0 | 3.40e-01 | 81.8% | 89.5% |
| 4u7mA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 37.0 | 3.40e-01 | 78.8% | 86.2% |
| 2j8hA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 45.0 | 3.96e-01 | 98.5% | 99.0% |
| 3bhcA01 | 3.30.460.20 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › CorA soluble domain-like | 0.52 | 43.0 | 3.58e-01 | 95.5% | 71.5% |
| 1ksiA02 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 37.0 | 3.35e-01 | 78.8% | 76.0% |
| 7ok5A05 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 42.0 | 3.87e-01 | 92.4% | 100.0% |
| 2ednA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 36.0 | 3.12e-01 | 80.3% | 81.4% |
| 7ok5A06 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 36.0 | 3.38e-01 | 78.8% | 94.3% |
| 5oj2B06 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 41.0 | 3.79e-01 | 95.5% | 98.9% |
| 2avgA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 40.0 | 3.49e-01 | 92.4% | 94.5% |
| 3fm8D03 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.50 | 39.0 | 3.37e-01 | 86.4% | 70.4% |
ECOD (42)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5018120 | 211.1.1.1 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase | 0.64 | 50.0 | 5.08e-01 | 92.4% | 86.2% |
| 5677 | 211.1.1.0 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.64 | 50.0 | 5.14e-01 | 92.4% | 91.8% |
| 3988804 | 3414.1.1.0 ↗ | beta sandwiches › A putative surface protein › A putative surface protein › A putative surface protein | 0.63 | 47.0 | 4.60e-01 | 83.3% | 96.0% |
| 3434713 | 2004.1.1.73 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 | 0.62 | 53.0 | 4.27e-01 | 98.5% | 52.6% |
| 5008812 | 264.2.1.0 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain | 0.62 | 43.0 | 3.65e-01 | 72.7% | 71.4% |
| 5033073 | 3414.1.1.13 ↗ | beta sandwiches › A putative surface protein › A putative surface protein › A putative surface protein › PF29994 | 0.61 | 48.0 | 4.25e-01 | 84.8% | 92.6% |
| 2508626 | 211.1.1.1 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase | 0.61 | 51.0 | 5.00e-01 | 92.4% | 91.4% |
| 3946718 | 211.1.1.0 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.59 | 46.0 | 4.72e-01 | 90.9% | 89.2% |
| 4821392 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.59 | 50.0 | 4.14e-01 | 95.5% | 57.5% |
| 3935924 | 2007.2.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase | 0.59 | 46.0 | 2.97e-01 | 84.8% | 32.7% |
| 4405445 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.58 | 43.0 | 4.22e-01 | 77.3% | 81.4% |
| 4950462 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.58 | 40.0 | 4.18e-01 | 75.8% | 78.3% |
| 3868413 | 316.1.1.20 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › OAS1_C | 0.57 | 48.0 | 3.53e-01 | 92.4% | 46.1% |
| 3639153 | 2011.2.1.0 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like | 0.57 | 45.0 | 3.18e-01 | 93.9% | 25.0% |
| 3902810 | 220.1.1.58 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH-GRAM_MTMR6-like | 0.57 | 47.0 | 3.85e-01 | 92.4% | 64.8% |
| 3176281 | 896.1.1.3 ↗ | a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › SRP9-21 | 0.57 | 43.0 | 4.18e-01 | 83.3% | 84.0% |
| 3805898 | 220.1.1.80 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › RME-8_N | 0.57 | 43.0 | 3.76e-01 | 81.8% | 79.0% |
| 461696 | 298.1.1.24 ↗ | a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 | 0.57 | 45.0 | 3.51e-01 | 90.9% | 45.9% |
| 3793467 | 11.1.1.97 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set | 0.56 | 41.0 | 3.75e-01 | 78.8% | 90.0% |
| 3619212 | 2007.2.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase | 0.56 | 45.0 | 2.96e-01 | 92.4% | 25.8% |
| 3782336 | 1.1.1.18 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp_protease_2 | 0.56 | 41.0 | 3.24e-01 | 77.3% | 96.2% |
| 4216580 | 298.1.1.8 ↗ | a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C | 0.55 | 44.0 | 3.12e-01 | 90.9% | 36.5% |
| 3879303 | 330.1.1.5 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DND1_DSRM | 0.55 | 37.0 | 3.55e-01 | 71.2% | 85.0% |
| 3738581 | 2007.2.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase | 0.55 | 43.0 | 2.87e-01 | 87.9% | 38.9% |
| 3709315 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.55 | 44.0 | 3.62e-01 | 87.9% | 63.3% |
| 3697598 | 211.1.1.1 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase | 0.54 | 45.0 | 3.65e-01 | 97.0% | 49.6% |
| 5044267 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 41.0 | 3.47e-01 | 84.8% | 95.8% |
| 4991305 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 40.0 | 3.77e-01 | 81.8% | 71.8% |
| 4412687 | 11.1.1.97 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set | 0.54 | 43.0 | 3.43e-01 | 95.5% | 60.6% |
| 3816125 | 2005.1.1.3 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp | 0.53 | 38.0 | 2.85e-01 | 77.3% | 79.4% |
| 4878713 | 331.3.1.42 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Mtb12_C | 0.53 | 38.0 | 3.38e-01 | 77.3% | 90.1% |
| 3852952 | 330.1.1.5 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DND1_DSRM | 0.53 | 36.0 | 3.47e-01 | 71.2% | 85.0% |
| 3946821 | 211.1.1.2 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › YecM | 0.53 | 42.0 | 4.00e-01 | 93.9% | 83.3% |
| 4269457 | 330.6.1.1 ↗ | a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer | 0.52 | 41.0 | 3.32e-01 | 86.4% | 79.9% |
| 3860140 | 11.1.1.179 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 | 0.52 | 43.0 | 3.84e-01 | 95.5% | 97.0% |
| 4407594 | 2003.1.2.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 | 0.51 | 38.0 | 2.72e-01 | 83.3% | 89.3% |
| 3486509 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.51 | 40.0 | 3.45e-01 | 90.9% | 72.2% |
| 3580679 | 11.1.1.859 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set, Ig_3 | 0.50 | 43.0 | 2.73e-01 | 98.5% | 22.8% |
| 3199818 | 298.1.1.0 ↗ | a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain | 0.50 | 41.0 | 3.37e-01 | 90.9% | 59.2% |
| 3859745 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.50 | 41.0 | 3.57e-01 | 93.9% | 70.9% |
| 5044263 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.50 | 37.0 | 3.67e-01 | 87.9% | 74.3% |
| 3885335 | 11.1.1.179 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 | 0.50 | 43.0 | 3.76e-01 | 97.0% | 97.0% |