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rifoxyd1_full_scaffold_5_prodigal-single.1__X__X__00525
Bact-Virrifoxyd1_full_scaffold_5_prodigal-single.1__X__X__00525
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 13-85
Domain cluster:
rep: KF669656.1__AGY47979.1__Petty_7__00007__D11-82
CATH (44)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1kq1H00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.79 | 62.0 | 6.55e-01 | 91.8% | 92.4% |
| 3hfnA00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.77 | 59.0 | 6.49e-01 | 90.4% | 100.0% |
| 2ej9A02 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.76 | 50.0 | 5.96e-01 | 76.7% | 100.0% |
| 1u1sA00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.74 | 62.0 | 6.49e-01 | 98.6% | 98.5% |
| 4x9cD00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.73 | 53.0 | 5.78e-01 | 87.7% | 93.3% |
| 4a53A01 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.73 | 53.0 | 5.73e-01 | 80.8% | 90.3% |
| 1b34B00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.72 | 63.0 | 6.27e-01 | 93.2% | 94.6% |
| 1zq1A01 | 2.30.30.520 | Mainly Beta › Roll › SH3 type barrels. › | 0.71 | 60.0 | 5.91e-01 | 91.8% | 89.6% |
| 1y96A00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.68 | 58.0 | 5.45e-01 | 91.8% | 77.9% |
| 2k57A00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.67 | 48.0 | 5.33e-01 | 79.5% | 100.0% |
| 2ra2B00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.65 | 47.0 | 5.14e-01 | 76.7% | 96.6% |
| 2fb7A00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.64 | 45.0 | 4.41e-01 | 74.0% | 88.7% |
| 4mi7A00 | 3.90.70.170 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.64 | 53.0 | 4.48e-01 | 93.2% | 75.8% |
| 1y96D00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.62 | 53.0 | 5.12e-01 | 95.9% | 81.9% |
| 2xk0A00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.61 | 45.0 | 4.65e-01 | 100.0% | 84.1% |
| 1sg5A01 | 2.30.30.400 | Mainly Beta › Roll › SH3 type barrels. › Rof-like | 0.61 | 51.0 | 5.07e-01 | 97.3% | 93.5% |
| 4ybnB00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.59 | 41.0 | 2.94e-01 | 72.6% | 53.2% |
| 3h8zA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.58 | 41.0 | 4.28e-01 | 90.4% | 84.4% |
| 2mysA01 | 2.30.30.360 | Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal | 0.57 | 36.0 | 4.16e-01 | 78.1% | 97.9% |
| 3fzqA02 | 3.30.1240.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › | 0.56 | 50.0 | 4.31e-01 | 100.0% | 95.7% |
| 2x5cA01 | 3.30.70.3590 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 47.0 | 4.48e-01 | 98.6% | 80.2% |
| 2hqvA00 | 3.40.1570.10 | Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains | 0.55 | 46.0 | 3.66e-01 | 100.0% | 67.4% |
| 1ca1A02 | 2.60.60.20 | Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain | 0.55 | 47.0 | 3.91e-01 | 91.8% | 94.2% |
| 3mb5A01 | 3.10.330.20 | Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › | 0.55 | 41.0 | 4.46e-01 | 80.8% | 100.0% |
| 1u3eM02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 39.0 | 4.08e-01 | 76.7% | 80.9% |
| 7ctpA01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.55 | 42.0 | 3.67e-01 | 86.3% | 90.0% |
| 2o6cA00 | 2.60.40.2480 | Mainly Beta › Sandwich › Immunoglobulin-like › Periplasmic metal-binding protein Tp34-type | 0.54 | 48.0 | 3.75e-01 | 100.0% | 89.2% |
| 1yloE02 | 2.40.30.40 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 | 0.54 | 44.0 | 4.25e-01 | 90.4% | 98.8% |
| 2greF02 | 2.40.30.40 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 | 0.53 | 43.0 | 4.24e-01 | 89.0% | 98.7% |
| 5kcoA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.53 | 37.0 | 3.98e-01 | 82.2% | 91.5% |
| 1wdiA02 | 2.40.10.240 | Mainly Beta › Beta Barrel › Thrombin, subunit H › QueA-like | 0.52 | 35.0 | 3.57e-01 | 86.3% | 69.9% |
| 3a2yA00 | 3.90.1720.10 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) | 0.52 | 41.0 | 3.21e-01 | 91.8% | 47.6% |
| 1mrzB02 | 2.40.30.30 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like | 0.52 | 40.0 | 3.50e-01 | 91.8% | 54.5% |
| 3wdhA01 | 2.60.40.2320 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 45.0 | 4.18e-01 | 98.6% | 80.2% |
| 2i51B00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.52 | 40.0 | 2.97e-01 | 83.6% | 36.1% |
| 1ylnA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.52 | 42.0 | 3.64e-01 | 89.0% | 65.8% |
| 1cttA02 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.52 | 40.0 | 3.41e-01 | 82.2% | 71.3% |
| 4zciA02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.51 | 45.0 | 4.07e-01 | 100.0% | 98.0% |
| 6julA02 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.51 | 43.0 | 3.91e-01 | 91.8% | 83.3% |
| 6rtqA00 | 2.40.128.30 | Mainly Beta › Beta Barrel › Lipocalin › Avidin-like | 0.51 | 40.0 | 3.42e-01 | 90.4% | 94.7% |
| 3kl9A02 | 2.40.30.40 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 | 0.51 | 42.0 | 4.22e-01 | 90.4% | 100.0% |
| 1xf1A02 | 3.50.30.30 | Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › | 0.51 | 36.0 | 2.90e-01 | 75.3% | 82.4% |
| 3bh1A03 | 3.40.140.40 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Domain of unknown function (DUF1846), C-terminal subdomain | 0.51 | 38.0 | 3.07e-01 | 80.8% | 86.3% |
| 2yn5A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 44.0 | 4.31e-01 | 98.6% | 91.1% |
ECOD (69)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5047239 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.82 | 68.0 | 7.19e-01 | 90.4% | 100.0% |
| 4400642 | 4.1.1.257 ↗ | beta barrels › SH3 › SH3 › SH3 › Flag1_repress | 0.80 | 64.0 | 6.10e-01 | 90.4% | 72.9% |
| 3036710 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.79 | 64.0 | 6.89e-01 | 93.2% | 100.0% |
| 135648 | 4.1.1.142 ↗ | beta barrels › SH3 › SH3 › SH3 › Hfq_1 | 0.79 | 63.0 | 6.68e-01 | 90.4% | 95.4% |
| 1263519 | 4.1.1.96 ↗ | beta barrels › SH3 › SH3 › SH3 › Hfq | 0.78 | 62.0 | 6.63e-01 | 93.2% | 98.4% |
| 4280097 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.77 | 57.0 | 6.18e-01 | 90.4% | 93.3% |
| 4451993 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.77 | 59.0 | 6.44e-01 | 91.8% | 98.3% |
| 4359892 | 4.1.1.96 ↗ | beta barrels › SH3 › SH3 › SH3 › Hfq | 0.77 | 63.0 | 6.15e-01 | 97.3% | 80.0% |
| 5013683 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.77 | 56.0 | 6.15e-01 | 91.8% | 93.3% |
| 3942526 | 4.1.1.257 ↗ | beta barrels › SH3 › SH3 › SH3 › Flag1_repress | 0.77 | 63.0 | 5.98e-01 | 87.7% | 77.6% |
| 4380345 | 4.1.1.257 ↗ | beta barrels › SH3 › SH3 › SH3 › Flag1_repress | 0.77 | 65.0 | 6.13e-01 | 90.4% | 78.8% |
| 4123180 | 4.1.1.96 ↗ | beta barrels › SH3 › SH3 › SH3 › Hfq | 0.76 | 62.0 | 6.19e-01 | 95.9% | 84.0% |
| 167340 | 4.1.1.28 ↗ | beta barrels › SH3 › SH3 › SH3 › BPL_C | 0.76 | 50.0 | 5.96e-01 | 76.7% | 100.0% |
| 4478186 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.76 | 46.0 | 5.75e-01 | 75.3% | 100.0% |
| 5077969 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.76 | 64.0 | 6.18e-01 | 89.0% | 81.2% |
| 4658938 | 4.1.1.96 ↗ | beta barrels › SH3 › SH3 › SH3 › Hfq | 0.76 | 62.0 | 5.79e-01 | 97.3% | 71.1% |
| 4499953 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.75 | 57.0 | 6.25e-01 | 91.8% | 98.3% |
| 5004476 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.74 | 54.0 | 5.75e-01 | 89.0% | 86.2% |
| 5053906 | 4.17.1.1 ↗ | beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N | 0.74 | 55.0 | 6.05e-01 | 86.3% | 96.7% |
| 4058174 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.74 | 58.0 | 6.15e-01 | 91.8% | 95.4% |
| 4031509 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.72 | 55.0 | 5.97e-01 | 87.7% | 100.0% |
| 3967986 | 4.7.1.2 ↗ | beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › ROF | 0.72 | 64.0 | 6.27e-01 | 98.6% | 98.8% |
| 2557227 | 4.7.1.2 ↗ | beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › ROF | 0.71 | 64.0 | 6.27e-01 | 98.6% | 96.1% |
| 4340758 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.70 | 58.0 | 5.93e-01 | 87.7% | 100.0% |
| 4555816 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.70 | 59.0 | 5.64e-01 | 91.8% | 83.5% |
| 4293453 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.69 | 58.0 | 5.63e-01 | 91.8% | 83.7% |
| 3971321 | 4.1.1.28 ↗ | beta barrels › SH3 › SH3 › SH3 › BPL_C | 0.68 | 57.0 | 5.90e-01 | 91.8% | 100.0% |
| 3272363 | 4.1.1.219 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM12_LSM | 0.68 | 56.0 | 5.14e-01 | 89.0% | 72.6% |
| 157624 | 4.1.1.47 ↗ | beta barrels › SH3 › SH3 › SH3 › Gemin6 | 0.68 | 58.0 | 5.45e-01 | 91.8% | 77.9% |
| 4228570 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.67 | 56.0 | 5.51e-01 | 91.8% | 96.2% |
| 185635 | 4.1.1.391 ↗ | beta barrels › SH3 › SH3 › SH3 › FDF, PF30873 | 0.67 | 54.0 | 4.54e-01 | 86.3% | 58.7% |
| 3507639 | 4.1.1.219 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM12_LSM | 0.66 | 55.0 | 5.63e-01 | 91.8% | 94.3% |
| 3232582 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.65 | 55.0 | 5.02e-01 | 91.8% | 72.6% |
| 3936130 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.65 | 56.0 | 5.14e-01 | 94.5% | 73.7% |
| 25624 | 4.1.1.45 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF903 | 0.65 | 44.0 | 5.07e-01 | 74.0% | 100.0% |
| 5034351 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.65 | 46.0 | 5.13e-01 | 80.8% | 100.0% |
| 4287411 | 4.1.1.182 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF2097 | 0.64 | 57.0 | 5.58e-01 | 100.0% | 91.3% |
| 3934628 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.64 | 48.0 | 4.53e-01 | 93.2% | 66.7% |
| 3907190 | 4.1.1.219 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM12_LSM | 0.64 | 52.0 | 4.76e-01 | 87.7% | 71.6% |
| 3786412 | 4.1.1.344 ↗ | beta barrels › SH3 › SH3 › SH3 › PF31193 | 0.64 | 54.0 | 5.28e-01 | 91.8% | 92.5% |
| 5040936 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.63 | 53.0 | 4.09e-01 | 91.8% | 46.3% |
| 5006274 | 4.11.1.0 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase | 0.62 | 49.0 | 4.03e-01 | 94.5% | 45.7% |
| 3969500 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.62 | 51.0 | 4.69e-01 | 90.4% | 76.8% |
| 3420348 | 4.1.1.306 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_VIII-1_N | 0.62 | 44.0 | 4.81e-01 | 86.3% | 100.0% |
| 3936053 | 4.1.1.71 ↗ | beta barrels › SH3 › SH3 › SH3 › Gemin7 | 0.61 | 51.0 | 5.28e-01 | 91.8% | 98.6% |
| 3960372 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.61 | 46.0 | 4.38e-01 | 93.2% | 69.4% |
| 3511375 | 4.1.1.349 ↗ | beta barrels › SH3 › SH3 › SH3 › ROF | 0.59 | 52.0 | 5.00e-01 | 100.0% | 85.9% |
| 3740204 | 4.1.1.71 ↗ | beta barrels › SH3 › SH3 › SH3 › Gemin7 | 0.59 | 51.0 | 4.91e-01 | 95.9% | 84.7% |
| 3576940 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.59 | 46.0 | 3.34e-01 | 94.5% | 28.4% |
| 3772638 | 4.1.1.71 ↗ | beta barrels › SH3 › SH3 › SH3 › Gemin7 | 0.58 | 50.0 | 4.87e-01 | 95.9% | 85.2% |
| 4405252 | 219.1.1.18 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 | 0.58 | 47.0 | 3.88e-01 | 93.2% | 47.9% |
| 2701178 | 4.1.1.71 ↗ | beta barrels › SH3 › SH3 › SH3 › Gemin7 | 0.57 | 50.0 | 4.72e-01 | 95.9% | 80.5% |
| 3580789 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.56 | 45.0 | 3.87e-01 | 89.0% | 76.7% |
| 3997533 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.56 | 43.0 | 3.83e-01 | 86.3% | 80.9% |
| 3484822 | 4.1.1.34 ↗ | beta barrels › SH3 › SH3 › SH3 › MBT | 0.56 | 45.0 | 4.42e-01 | 94.5% | 83.7% |
| 396031 | 4.22.1.1 ↗ | beta barrels › SH3 › Hypothetical protein ORF131 › Hypothetical protein ORF131 › PSV_ORF131-like_dom | 0.56 | 47.0 | 4.32e-01 | 98.6% | 72.3% |
| 4332271 | 10.10.1.1 ↗ | beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) › PLAT | 0.56 | 47.0 | 3.94e-01 | 91.8% | 91.9% |
| 3410256 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.55 | 46.0 | 3.31e-01 | 93.2% | 42.3% |
| 3597224 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.55 | 45.0 | 3.87e-01 | 94.5% | 84.8% |
| 3339169 | 4.1.1.415 ↗ | beta barrels › SH3 › SH3 › SH3 › PNPOx_N | 0.55 | 44.0 | 4.25e-01 | 91.8% | 88.2% |
| 3741069 | 4.1.1.314 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW, Ribosomal_uL24m-like | 0.54 | 47.0 | 3.26e-01 | 100.0% | 36.2% |
| 3417047 | 1.1.8.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain | 0.54 | 42.0 | 4.44e-01 | 91.8% | 93.8% |
| 3261761 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 44.0 | 4.03e-01 | 90.4% | 88.4% |
| 154312 | 4.1.1.65 ↗ | beta barrels › SH3 › SH3 › SH3 › 53-BP1_Tudor | 0.53 | 39.0 | 4.04e-01 | 100.0% | 87.1% |
| 3370313 | 220.1.1.78 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_2 | 0.53 | 42.0 | 3.35e-01 | 91.8% | 60.6% |
| 3658750 | 220.1.1.78 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_2 | 0.52 | 41.0 | 3.59e-01 | 91.8% | 80.8% |
| 4646862 | 1.1.5.26 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN | 0.52 | 44.0 | 3.96e-01 | 100.0% | 70.0% |
| 3343692 | 4.2.1.6 ↗ | beta barrels › SH3 › SAND › SAND › SAND_ULT1 | 0.51 | 42.0 | 3.61e-01 | 90.4% | 75.4% |
| 127 | 1.1.7.10 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Flavokinase | 0.50 | 40.0 | 3.59e-01 | 90.4% | 67.0% |