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ring_finger

Euk-Vir

Peridroma_alphabaculovirus

ring_finger__YP_009049899__Peridroma_alphabaculovirus__1346829

Identity

Accession:: YP_009049899 ↗
Protein ID:: ring_finger
Kingdom:: euk

Quality

62.0 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Alphabaculovirus› Peridroma_alphabaculovirus

TaxID: 1346829

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 50-66_93-171

PDB

Domain cluster: rep: hypothetical_protein_KM622_gp073__YP_010086491__Spodoptera_exempta_nucleopolyhedrovirus__1242863__D109-178

Pfam (3)

Accession	Name	Score	E-value	Q cov	HMM cov
PF13639.13 best	zf-RING_2	41.8	1.50e-10	49.0%	100.0%
PF00097.32	zf-C3HC4	32.5	8.80e-08	45.8%	100.0%
PF13445.13	zf-RING_UBOX	27.3	4.10e-06	43.8%	100.0%

CATH (8)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4v3lC00	3.30.40.10	Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger)	0.77	52.0	6.12e-01	82.3%	95.7%
7r71A01	3.30.40.10	Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger)	0.75	49.0	6.04e-01	79.2%	100.0%
2l0bA00	3.30.40.10	Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger)	0.69	50.0	5.18e-01	81.2%	80.2%
3ihpA01	3.30.40.10	Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger)	0.59	43.0	4.04e-01	97.9%	62.9%
3gv4A00	3.30.40.10	Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger)	0.58	40.0	4.00e-01	95.8%	69.7%
2fd4A00	3.30.40.110	Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › AvrPtoB, C-terminal domain	0.55	48.0	4.70e-01	97.9%	95.2%
4joiC00	2.40.50.140	Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins	0.54	35.0	3.29e-01	100.0%	54.2%
1pcfA00	2.30.31.10	Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A	0.52	25.0	2.98e-01	93.8%	65.2%

ECOD (12)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3760419	376.1.1.45 ↗	few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-NOSIP	0.78	55.0	4.29e-01	72.9%	81.5%
3295801	376.1.1.21 ↗	few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2	0.78	56.0	5.84e-01	75.0%	80.0%
None	—		0.77	54.0	4.31e-01	72.9%	84.3%
3459348	376.1.1.21 ↗	few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2	0.76	52.0	5.32e-01	93.8%	71.6%
3814655	376.1.1.21 ↗	few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2	0.71	55.0	5.99e-01	81.2%	96.2%
3825395	376.1.1.21 ↗	few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2	0.71	50.0	5.83e-01	94.8%	100.0%
4945028	376.1.1.0 ↗	few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box	0.70	50.0	5.67e-01	74.0%	98.6%
3444560	376.1.1.21 ↗	few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2	0.69	52.0	5.84e-01	84.4%	100.0%
3677066	376.1.1.21 ↗	few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2	0.68	54.0	5.94e-01	91.7%	100.0%
3627550	376.1.1.27 ↗	few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_5	0.67	45.0	4.85e-01	70.8%	81.2%
3346269	376.1.1.21 ↗	few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2	0.67	57.0	5.88e-01	88.5%	97.8%
3740387	376.1.1.17 ↗	few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-rbx1	0.61	53.0	5.54e-01	93.8%	100.0%