←Back to structures
rolling-circle_replication_protein
Euk-VirPleurochrysis_carterae_circular_virus
rolling-circle_replication_protein__YP_009448204__Pleurochrysis_carterae_circular_virus__2057942
Identity
- Accession:
- YP_009448204 ↗
- Protein ID:
- rolling-circle_replication_protein
- Kingdom:
- euk
Quality
76.8
mean pLDDT
Taxonomy
Shotokuvirae›
Cressdnaviricota›
Arfiviricetes›
Cirlivirales›
Circoviridae›
Pleurochrysis_carterae_circular_virus
TaxID: 2057942
Cluster
View cluster (107 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 172-282
Domain cluster:
rep: IMGVR_UViG_638276918_000001-638276918-638305645__D148-283
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00910.29 best | RNA_helicase | 41.2 | 2.90e-10 | 78.4% | 99.1% |
D2
medium
residues 20-108
Domain cluster:
rep: replication_associated_protein__YP_009237599__Lake_Sarah-associated_circular_molecule_10_Viruses.__X__D15-119
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02407.23 best | Viral_Rep | 37.5 | 3.30e-09 | 91.0% | 72.0% |
D3
medium
residues 114-162
Domain cluster:
representative
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3favD00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.84 | 43.0 | 3.60e-01 | 95.9% | 32.1% |
| 4abmD00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.67 | 46.0 | 3.92e-01 | 71.4% | 50.6% |
| 3on3B00 | 3.40.920.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III | 0.65 | 47.0 | 3.17e-01 | 77.6% | 29.1% |
| 4okvE00 | 6.10.140.1890 | Special › Helix non-globular › Helix Hairpins › | 0.63 | 43.0 | 3.90e-01 | 71.4% | 53.8% |
| 1wfdA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.63 | 42.0 | 3.46e-01 | 71.4% | 38.7% |
| 2j0wA02 | 1.20.120.1320 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Aspartokinase, catalytic domain | 0.61 | 43.0 | 3.41e-01 | 83.7% | 38.7% |
| 3l1nA02 | 1.20.1280.140 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.51 | 41.0 | 3.55e-01 | 98.0% | 94.3% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4525341 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.66 | 45.0 | 3.94e-01 | 85.7% | 50.0% |
| 3435944 | 101.35.1.23 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › Ovate | 0.58 | 43.0 | 4.00e-01 | 83.7% | 92.3% |
| 3673670 | 639.2.1.4 ↗ | alpha arrays › HHA-like › Regulator of acid resistance influenced by indole (AriR) › Regulator of acid resistance influenced by indole (AriR) › Ovate | 0.55 | 42.0 | 3.98e-01 | 91.8% | 90.8% |