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rr1

Euk-Vir

Mamestra_brassicae_multiple_nucleopolyhedrovirus

rr1__YP_009011224__Mamestra_brassicae_multiple_nucleopolyhedrovirus__78219

Identity

Accession:: YP_009011224 ↗
Protein ID:: rr1
Kingdom:: euk

Quality

91.9 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Alphabaculovirus› Mamestra_brassicae_multiple_nucleopolyhedrovirus

TaxID: 78219

Cluster

View cluster (122 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-88

PDB

Domain cluster: rep: IMGVR_UViG_3300007266_000133-3300007266-Ga0101450_1063124__D4-90

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03477.22 best	ATP-cone	52.6	7.70e-14	100.0%	97.7%

D2 medium residues 91-204

PDB

Domain cluster: rep: NC_007021.1__YP_238596.1__TwortORF045__00062__D44-158

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00317.27 best	Ribonuc_red_lgN	75.3	4.40e-21	64.0%	94.8%

D3 medium residues 205-322_378-433_687-731

PDB

Domain cluster: rep: IMGVR_UViG_3300042092_000730-3300042092-Ga0453238_010587_859_2079__D220-402

Pfam (3)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02867.21 best	Ribonuc_red_lgC	146.5	1.50e-42	53.9%	22.1%
PF02867.21	Ribonuc_red_lgC	66.7	2.40e-18	28.3%	11.8%
PF02867.21	Ribonuc_red_lgC	49.8	3.10e-13	21.5%	8.8%

D4 medium residues 323-377

PDB

Domain cluster: rep: orf61__YP_009044444__Alcelaphine_gammaherpesvirus_2__138184__D298-350

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02867.21 best	Ribonuc_red_lgC	47.6	1.40e-12	100.0%	9.9%

CATH (6)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2wghA00	3.20.70.20	Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain ›	0.99	95.0	5.19e-01	100.0%	8.5%
1r1rA02	3.20.70.20	Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain ›	0.93	87.0	4.89e-01	100.0%	11.6%
1peqA03	1.10.1650.20	Mainly Alpha › Orthogonal Bundle › 50s Ribosomal Protein L19e, Chain O, domain 1 ›	0.71	57.0	5.80e-01	90.9%	100.0%
4j6eA01	3.40.50.20	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold ›	0.67	47.0	3.57e-01	72.7%	86.8%
3mnfA00	3.40.50.10900	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › PAC-like subunit	0.56	43.0	2.91e-01	85.5%	81.7%
1qh5A00	3.60.15.10	Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like	0.54	38.0	2.51e-01	74.5%	48.1%

ECOD (17)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4015532	2500.1.1.0 ↗	a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel	1.00	96.0	5.33e-01	100.0%	9.6%
3823652	2500.1.1.2 ↗	a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC	1.00	96.0	5.33e-01	100.0%	9.7%
996122	2500.1.1.2 ↗	a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC	0.97	91.0	5.03e-01	100.0%	9.3%
4298539	2500.1.1.2 ↗	a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC	0.97	93.0	5.16e-01	100.0%	11.2%
4067125	2500.1.1.2 ↗	a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC	0.95	90.0	5.04e-01	100.0%	12.5%
3963206	2500.1.1.2 ↗	a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC	0.94	88.0	4.93e-01	100.0%	10.9%
3942765	2500.1.1.2 ↗	a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC	0.94	88.0	4.91e-01	100.0%	11.1%
4822330	2500.1.1.2 ↗	a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC	0.93	87.0	4.95e-01	100.0%	12.4%
4145444	2500.1.1.2 ↗	a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC	0.93	87.0	4.90e-01	100.0%	11.2%
3590466	2500.1.1.2 ↗	a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC	0.79	72.0	4.06e-01	100.0%	10.6%
3958480	2500.1.1.2 ↗	a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC	0.78	69.0	4.13e-01	100.0%	15.7%
4190659	2500.1.1.2 ↗	a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC	0.75	56.0	3.07e-01	100.0%	6.3%
3718176	2004.1.1.0 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases	0.66	51.0	3.30e-01	85.5%	70.6%
2753367	219.1.1.43 ↗	a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CoV_peptidase	0.57	47.0	3.29e-01	100.0%	77.9%
5069211	3361.1.1.0 ↗	alpha bundles › C-terminal Pdr1-activating domain of J-protein Zuo1 › C-terminal Pdr1-activating domain of J-protein Zuo1 › C-terminal Pdr1-activating domain of J-protein Zuo1	0.54	41.0	3.12e-01	83.6%	60.8%
3290586	132.1.1.1 ↗	alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › PP-binding	0.52	36.0	3.32e-01	81.8%	51.2%
5058546	2500.1.1.0 ↗	a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel	0.50	38.0	2.23e-01	85.5%	63.0%

D5 medium residues 451-560

PDB

Domain cluster: rep: hypothetical_protein_FR483_N766L__YP_001426398__Paramecium_bursaria_Chlorella_virus_FR483__399781__D433-559_739-758

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02867.21 best	Ribonuc_red_lgC	117.6	8.70e-34	100.0%	21.0%