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sLT

Euk-Vir

Black_sea_bass_polyomavirus_1

sLT__YP_009110678__Black_sea_bass_polyomavirus_1__1572341

Identity

Accession:: YP_009110678 ↗
Protein ID:: sLT
Kingdom:: euk

Quality

75.7 mean pLDDT

Cluster

View cluster (129 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-71

PDB

Domain cluster: representative

CATH (22)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
6tkvA01	1.10.287.1060	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like	0.82	57.0	5.62e-01	72.3%	76.5%
3hr0B01	1.10.287.1060	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like	0.77	54.0	5.12e-01	73.8%	64.6%
4wzxA01	1.20.58.80	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit	0.68	53.0	5.10e-01	86.2%	94.7%
5ha6B00	1.10.287.210	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.68	49.0	4.66e-01	76.9%	84.8%
1yxrA01	1.20.58.80	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit	0.68	51.0	4.98e-01	84.6%	95.9%
5c8aA01	1.10.1240.10	Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain	0.66	51.0	4.87e-01	84.6%	93.6%
1iurA01	1.10.287.110	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain	0.66	51.0	5.19e-01	84.6%	92.1%
2rkhA02	1.20.1280.20	Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain	0.64	53.0	5.06e-01	90.8%	93.4%
3hl6A02	1.20.58.700	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.64	50.0	4.13e-01	84.6%	51.3%
3nivC02	1.20.1050.10	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 ›	0.62	46.0	3.66e-01	100.0%	41.1%
1j1jA02	1.20.58.200	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2	0.61	52.0	4.83e-01	96.9%	80.0%
2r9iA00	1.10.287.80	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain	0.61	51.0	5.04e-01	96.9%	87.3%
2p4vA01	1.10.287.180	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Transcription elongation factor, GreA/GreB, N-terminal domain	0.59	52.0	4.94e-01	96.9%	93.4%
2zgyA02	3.30.420.40	Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain	0.57	51.0	3.96e-01	100.0%	49.3%
3ddhA02	1.10.150.240	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2	0.56	46.0	4.33e-01	93.8%	98.8%
3r2cA00	1.10.940.10	Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like	0.56	48.0	3.79e-01	95.4%	55.1%
1e3pA02	1.10.10.400	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain	0.56	46.0	4.29e-01	92.3%	80.7%
3cl3A01	1.10.533.10	Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas	0.55	41.0	3.88e-01	83.1%	70.2%
7r8bB01	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.54	42.0	2.78e-01	86.2%	43.5%
2hoqA02	1.10.150.520	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 ›	0.53	46.0	4.39e-01	100.0%	87.3%
1paqA00	1.25.40.180	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.53	43.0	3.23e-01	89.2%	36.6%
4g1tA02	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.52	36.0	3.72e-01	81.5%	77.0%

ECOD (12)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4683248	5086.1.1.66 ↗	alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › GNVR	0.74	51.0	4.02e-01	73.8%	85.0%
3240469	604.1.1.0 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat	0.71	64.0	5.81e-01	98.5%	81.2%
3258290	1128.1.1.1 ↗	alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR	0.69	47.0	4.50e-01	70.8%	65.3%
3266855	5.1.5.0 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed	0.69	56.0	3.25e-01	89.2%	15.5%
4486707	103.4.1.5 ↗	alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › KIX_2	0.69	47.0	4.28e-01	70.8%	72.9%
3637728	1128.1.1.1 ↗	alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR	0.64	47.0	3.98e-01	76.9%	48.6%
3587311	3660.1.1.1 ↗	alpha bundles › Protein-export membrane protein secG › Protein-export membrane protein secG › Protein-export membrane protein secG › SecG	0.63	58.0	5.53e-01	100.0%	90.7%
3253990	207.1.1.0 ↗	beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats	0.59	41.0	2.59e-01	73.8%	12.6%
4886422	3660.1.1.1 ↗	alpha bundles › Protein-export membrane protein secG › Protein-export membrane protein secG › Protein-export membrane protein secG › SecG	0.59	53.0	5.09e-01	100.0%	89.3%
2167293	611.3.1.2 ↗	alpha bundles › N-cbl like › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › LEDGF	0.58	45.0	4.19e-01	87.7%	70.6%
3806413	4133.1.1.0 ↗	alpha arrays › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like	0.56	44.0	3.35e-01	86.2%	38.1%
3586132	101.11.1.1 ↗	alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase	0.51	45.0	3.98e-01	98.5%	73.7%

D2 high residues 90-195

PDB

Domain cluster: rep: large_T_antigen__YP_009115503__Adelie_penguin_polyomavirus__1590650__D167-268

D3 medium residues 207-298

PDB

Domain cluster: rep: ORF01L__YP_009252373__Marbled_eel_polyomavirus__1662286__D415-505

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF06431.17 best	Polyoma_lg_T_C	45.8	6.00e-12	98.9%	18.2%

D4 medium residues 299-351_490-544

PDB

Domain cluster: rep: large_T_antigen__YP_009110677__Black_sea_bass_polyomavirus_1__1572341__D298-342_501-544