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scnpilot_p_inoc_scaffold_115_prodigal-single.1__X__X__00244
Bact-Virscnpilot_p_inoc_scaffold_115_prodigal-single.1__X__X__00244
Identity
- Kingdom:
- phage
Quality
87.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 7-89
Domain cluster:
representative
CATH (35)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2vwaA00 | 1.20.58.1330 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Plasmodium falciparum UIS3 membrane protein | 0.75 | 54.0 | 5.09e-01 | 74.7% | 83.8% |
| 2m63A00 | 1.25.40.780 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.68 | 46.0 | 3.71e-01 | 88.0% | 36.9% |
| 1gu9C00 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.67 | 55.0 | 4.40e-01 | 91.6% | 56.0% |
| 1zk8B02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.65 | 51.0 | 4.45e-01 | 86.7% | 74.2% |
| 4hehA01 | 1.10.1240.10 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain | 0.64 | 45.0 | 4.51e-01 | 73.5% | 90.4% |
| 3ciaA04 | 1.25.40.320 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Peptidase M1, leukotriene A4 hydrolase/aminopeptidase C-terminal domain | 0.63 | 49.0 | 4.16e-01 | 84.3% | 54.3% |
| 1c02A00 | 1.20.120.160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain | 0.63 | 54.0 | 4.30e-01 | 94.0% | 77.1% |
| 1t72A02 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.63 | 45.0 | 4.34e-01 | 77.1% | 96.9% |
| 6hftA01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.63 | 52.0 | 4.49e-01 | 90.4% | 59.8% |
| 2fbnA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.62 | 54.0 | 4.43e-01 | 100.0% | 52.9% |
| 1ihgA02 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.61 | 53.0 | 4.47e-01 | 100.0% | 55.9% |
| 1hw1A02 | 1.20.120.530 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like | 0.61 | 43.0 | 3.60e-01 | 74.7% | 74.8% |
| 3umvA02 | 1.25.40.80 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.61 | 50.0 | 3.95e-01 | 90.4% | 63.2% |
| 3qnfA04 | 1.10.3480.20 | Mainly Alpha › Orthogonal Bundle › TorD-like › | 0.61 | 47.0 | 3.76e-01 | 85.5% | 52.5% |
| 1fpoC02 | 1.20.1280.20 | Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain | 0.60 | 45.0 | 4.42e-01 | 79.5% | 95.6% |
| 2i0mA02 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.60 | 48.0 | 4.49e-01 | 85.5% | 100.0% |
| 2katA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.60 | 47.0 | 4.24e-01 | 85.5% | 65.2% |
| 2xqyA02 | 1.20.58.1340 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.59 | 48.0 | 4.08e-01 | 91.6% | 89.5% |
| 3c2gA02 | 1.10.10.1630 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Sys-1 C-terminal domain-like | 0.59 | 40.0 | 4.32e-01 | 71.1% | 100.0% |
| 4yvoA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.59 | 48.0 | 4.26e-01 | 89.2% | 67.2% |
| 3ro3A00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.58 | 47.0 | 3.88e-01 | 90.4% | 53.5% |
| 2dbaA01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.58 | 47.0 | 4.25e-01 | 90.4% | 64.4% |
| 3zukA01 | 3.40.390.10 | Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › Collagenase (Catalytic Domain) | 0.58 | 44.0 | 3.10e-01 | 86.7% | 95.6% |
| 3ezuA01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.57 | 47.0 | 3.68e-01 | 90.4% | 94.5% |
| 2vxxA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.57 | 45.0 | 3.57e-01 | 85.5% | 82.6% |
| 1bbhA00 | 1.20.120.10 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c/b562 | 0.56 | 48.0 | 4.16e-01 | 95.2% | 96.2% |
| 1cgnA00 | 1.20.120.10 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c/b562 | 0.55 | 47.0 | 4.15e-01 | 95.2% | 97.6% |
| 2a0bA00 | 1.20.120.160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain | 0.55 | 46.0 | 4.13e-01 | 92.8% | 69.5% |
| 2ap3A00 | 1.20.120.570 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YkyA-like | 0.55 | 48.0 | 3.67e-01 | 97.6% | 74.0% |
| 2lqgA00 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.54 | 44.0 | 3.72e-01 | 88.0% | 66.7% |
| 4wqoD00 | 1.20.1310.10 | Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats | 0.54 | 44.0 | 3.87e-01 | 96.4% | 87.2% |
| 1mijA00 | 1.10.10.500 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeo-prospero domain | 0.52 | 45.0 | 3.77e-01 | 94.0% | 90.6% |
| 3jrtA00 | 1.20.120.1060 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.51 | 45.0 | 3.63e-01 | 98.8% | 92.2% |
| 1cg5B00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.51 | 40.0 | 3.42e-01 | 86.7% | 66.7% |
| 2pg0A03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.50 | 42.0 | 3.40e-01 | 89.2% | 59.1% |
ECOD (33)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3741700 | 109.40.1.2 ↗ | alpha superhelices › Repetitive alpha hairpins › DNA polymerase alpha-binding protein Ctf4 C-terminal domain › DNA polymerase alpha-binding protein Ctf4 C-terminal domain › Ctf4_C | 0.80 | 68.0 | 6.04e-01 | 90.4% | 71.3% |
| 3596878 | 109.40.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › DNA polymerase alpha-binding protein Ctf4 C-terminal domain › DNA polymerase alpha-binding protein Ctf4 C-terminal domain | 0.78 | 65.0 | 5.56e-01 | 90.4% | 58.5% |
| 3574716 | 109.4.1.1312 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF30475 | 0.77 | 61.0 | 5.82e-01 | 84.3% | 77.9% |
| 5013136 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.71 | 55.0 | 3.90e-01 | 84.3% | 32.5% |
| 3592197 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.71 | 55.0 | 4.85e-01 | 85.5% | 65.6% |
| 4527236 | 109.4.1.341 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_21 | 0.69 | 62.0 | 4.64e-01 | 100.0% | 46.1% |
| 3166853 | 109.30.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › Nucleoporin Nup84/Nup107 › Nucleoporin Nup84/Nup107 › Nup84_Nup100 | 0.69 | 49.0 | 3.05e-01 | 73.5% | 66.4% |
| 5013781 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.68 | 55.0 | 4.64e-01 | 90.4% | 57.2% |
| 5078192 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.66 | 52.0 | 3.79e-01 | 89.2% | 37.3% |
| 3647731 | 109.4.1.5 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1 | 0.65 | 52.0 | 4.24e-01 | 88.0% | 52.5% |
| 3641196 | 5041.1.1.27 ↗ | extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › PRA1 | 0.65 | 37.0 | 3.28e-01 | 88.0% | 40.0% |
| 3969091 | 109.4.1.203 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.65 | 57.0 | 4.46e-01 | 100.0% | 55.1% |
| 3785501 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.63 | 54.0 | 3.28e-01 | 92.8% | 15.5% |
| 3988948 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.62 | 51.0 | 3.97e-01 | 89.2% | 41.7% |
| 3657582 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.62 | 50.0 | 4.16e-01 | 91.6% | 55.7% |
| 3665244 | 109.7.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Cytochrome c oxidase subunit E › Cytochrome c oxidase subunit E | 0.62 | 49.0 | 4.07e-01 | 88.0% | 54.2% |
| 4013703 | 109.4.1.1244 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_30 | 0.62 | 50.0 | 4.28e-01 | 90.4% | 64.3% |
| 3228316 | 109.4.1.192 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8 | 0.61 | 53.0 | 4.34e-01 | 100.0% | 74.5% |
| 3457031 | 109.4.1.1130 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_BSK1_C | 0.61 | 52.0 | 4.45e-01 | 96.4% | 59.0% |
| 3628636 | 109.4.1.631 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SRP72 | 0.60 | 47.0 | 3.37e-01 | 85.5% | 31.5% |
| 3484490 | 109.4.1.584 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fis1_TPR_C | 0.60 | 51.0 | 4.53e-01 | 97.6% | 71.2% |
| 5062534 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.59 | 45.0 | 4.32e-01 | 81.9% | 85.3% |
| 5050604 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.59 | 47.0 | 4.23e-01 | 89.2% | 70.8% |
| 4016166 | 109.4.1.95 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_2 | 0.59 | 46.0 | 3.88e-01 | 85.5% | 75.2% |
| 3250614 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.58 | 52.0 | 3.81e-01 | 98.8% | 42.7% |
| 3857096 | 109.4.1.97 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_2,TPR_12 | 0.58 | 47.0 | 3.43e-01 | 90.4% | 34.0% |
| 3853423 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.58 | 47.0 | 4.07e-01 | 90.4% | 81.5% |
| 4525503 | 109.4.1.190 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_6 | 0.57 | 46.0 | 3.75e-01 | 90.4% | 45.5% |
| 4977043 | 5051.1.1.10 ↗ | alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › AA_permease_2 | 0.57 | 45.0 | 2.93e-01 | 86.7% | 95.7% |
| 5002258 | 109.7.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Cytochrome c oxidase subunit E › Cytochrome c oxidase subunit E | 0.57 | 46.0 | 4.73e-01 | 90.4% | 96.2% |
| 3389252 | 3777.1.1.1 ↗ | alpha bundles › Prolyl 4-hydroxylase alpha subunit dimerization domain › Prolyl 4-hydroxylase alpha subunit dimerization domain › Prolyl 4-hydroxylase alpha subunit dimerization domain › P4Ha_N | 0.56 | 47.0 | 3.48e-01 | 95.2% | 75.7% |
| 3591627 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.56 | 49.0 | 3.82e-01 | 100.0% | 44.7% |
| 5060951 | 5051.1.1.10 ↗ | alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › AA_permease_2 | 0.54 | 47.0 | 3.05e-01 | 100.0% | 62.4% |
D2
medium
residues 90-174
Domain cluster:
rep: MW735835.1__QTH80289.1__PA10_00089__00089__D233-325
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7cluA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 39.0 | 3.91e-01 | 74.1% | 69.7% |
| 5k3hA01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.53 | 42.0 | 3.77e-01 | 88.2% | 60.3% |
| 1cs3A00 | 3.30.710.10 | Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A | 0.53 | 34.0 | 3.13e-01 | 82.4% | 48.3% |
| 1lnwF01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 35.0 | 3.17e-01 | 100.0% | 48.4% |
| 2fnaA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 44.0 | 3.48e-01 | 100.0% | 73.4% |
| 6v88A00 | 3.30.710.10 | Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A | 0.52 | 38.0 | 3.54e-01 | 87.1% | 59.5% |
| 3ecoB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 36.0 | 3.19e-01 | 100.0% | 48.8% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3849947 | 101.1.2.12 ↗ | alpha arrays › HTH › HTH › winged helix domain › DEP | 0.60 | 44.0 | 3.67e-01 | 77.6% | 56.7% |
| 5050809 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.55 | 46.0 | 3.09e-01 | 96.5% | 29.3% |
| 5013283 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 35.0 | 3.74e-01 | 75.3% | 76.0% |
| 3687447 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.53 | 45.0 | 3.43e-01 | 100.0% | 36.5% |
| 3213629 | 2002.1.1.111 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HpcH_HpaI | 0.53 | 44.0 | 3.01e-01 | 92.9% | 35.3% |
| 3208701 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.53 | 44.0 | 3.31e-01 | 97.6% | 52.0% |
| 3239697 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.53 | 44.0 | 3.33e-01 | 96.5% | 39.6% |
| 3918118 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.52 | 40.0 | 3.51e-01 | 83.5% | 71.9% |
| 3789439 | 603.1.1.222 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Rbsn | 0.52 | 43.0 | 3.55e-01 | 100.0% | 78.9% |
| 5004889 | 225.2.1.1 ↗ | a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › Uncharacterized protein DIP2311 middle domain › Uncharacterized protein DIP2311 middle domain › HATPase_c_4 | 0.52 | 40.0 | 2.98e-01 | 89.4% | 89.1% |
| 5000698 | 604.38.1.0 ↗ | alpha bundles › Spectrin repeat-like › Legionella effector SdeA 3-helical bundle › Legionella effector SdeA 3-helical bundle | 0.51 | 39.0 | 3.67e-01 | 82.4% | 69.5% |
| 3938199 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.51 | 41.0 | 3.36e-01 | 92.9% | 77.7% |
| 3706908 | 2484.1.1.13 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T | 0.50 | 41.0 | 3.00e-01 | 95.3% | 72.5% |
| 4261739 | 3068.2.1.1 ↗ | a+b complex topology › Flagellar protein FlgA N-terminal domain-like › RNase J C-terminal domain › RNase J C-terminal domain › RNase_J_C | 0.50 | 35.0 | 3.28e-01 | 74.1% | 63.6% |