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scnpilot_solids1_trim150_scaffold_46_prodigal-single.1__X__X__00059
Bact-Virscnpilot_solids1_trim150_scaffold_46_prodigal-single.1__X__X__00059
Identity
- Kingdom:
- phage
Quality
41.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 72-179
D2
high
residues 218-263
Domain cluster:
rep: IMGVR_UViG_3300029305_005928-3300029305-Ga0307249_101033452__D259-301
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01476.27 best | LysM | 38.0 | 1.80e-09 | 97.8% | 93.0% |
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5c8qB02 | 3.10.350.10 | Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain | 0.96 | 84.0 | 8.47e-01 | 100.0% | 93.5% |
| 4b8vA01 | 3.10.350.10 | Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain | 0.95 | 84.0 | 7.21e-01 | 100.0% | 64.2% |
| 4b8vA02 | 3.10.350.10 | Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain | 0.87 | 75.0 | 6.41e-01 | 100.0% | 60.3% |
| 4b8vA03 | 3.10.350.10 | Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain | 0.81 | 67.0 | 6.63e-01 | 100.0% | 87.8% |
| 2mtzA01 | 3.10.350.10 | Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain | 0.79 | 63.0 | 6.24e-01 | 100.0% | 84.0% |
| 3tmpA01 | 3.90.70.80 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.74 | 57.0 | 3.96e-01 | 84.8% | 45.3% |
| 2gu1A01 | 3.10.450.350 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.71 | 63.0 | 5.07e-01 | 100.0% | 53.4% |
| 6dx5A00 | 3.90.70.80 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.69 | 59.0 | 3.96e-01 | 95.7% | 65.1% |
| 3pfyA02 | 6.10.20.180 | Special › Helix non-globular › Arc Repressor Mutant, subunit A › | 0.67 | 52.0 | 4.87e-01 | 84.8% | 89.5% |
| 7w01A01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.65 | 52.0 | 3.48e-01 | 100.0% | 29.3% |
| 3sluB01 | 3.10.450.350 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.61 | 51.0 | 4.22e-01 | 100.0% | 51.6% |
| 1s6lA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 47.0 | 4.62e-01 | 91.3% | 96.2% |
| 7f0uA01 | 1.10.8.1190 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Papain-like viral protease, thumb domain | 0.59 | 44.0 | 3.60e-01 | 84.8% | 64.2% |
| 6oinA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 46.0 | 4.28e-01 | 100.0% | 89.6% |
| 7tchB01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.59 | 44.0 | 3.01e-01 | 100.0% | 26.9% |
| 3k9tA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 37.0 | 3.50e-01 | 84.8% | 65.2% |
| 7pzaA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 40.0 | 3.51e-01 | 100.0% | 83.7% |
| 3a06B03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.51 | 39.0 | 3.24e-01 | 84.8% | 62.5% |
| 2auwB02 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.50 | 34.0 | 3.04e-01 | 71.7% | 78.6% |
ECOD (81)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4680476 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.97 | 86.0 | 7.25e-01 | 100.0% | 61.4% |
| 5004560 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.96 | 90.0 | 8.41e-01 | 100.0% | 83.6% |
| 3955076 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.96 | 86.0 | 8.75e-01 | 95.7% | 97.8% |
| 4205026 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.95 | 82.0 | 7.12e-01 | 100.0% | 64.6% |
| 2809236 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.95 | 88.0 | 7.84e-01 | 100.0% | 77.4% |
| 3898121 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.95 | 81.0 | 7.58e-01 | 100.0% | 76.4% |
| 3985839 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.95 | 81.0 | 6.89e-01 | 100.0% | 60.0% |
| 3452845 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.95 | 81.0 | 7.57e-01 | 100.0% | 76.4% |
| 3587382 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.94 | 87.0 | 8.16e-01 | 100.0% | 83.6% |
| 3974521 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.94 | 80.0 | 7.23e-01 | 100.0% | 70.0% |
| 3838194 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.94 | 80.0 | 8.11e-01 | 100.0% | 93.3% |
| 4118675 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.93 | 79.0 | 8.07e-01 | 100.0% | 93.3% |
| 4177991 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.93 | 84.0 | 7.88e-01 | 100.0% | 81.8% |
| 4448562 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.93 | 79.0 | 7.39e-01 | 100.0% | 76.4% |
| 3981327 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.92 | 80.0 | 7.55e-01 | 100.0% | 79.6% |
| 2543722 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.91 | 86.0 | 6.93e-01 | 100.0% | 58.2% |
| 4995817 | 101.15.1.4 ↗ | alpha arrays › HTH › LysM domain › LysM domain › Phage_gp53 | 0.91 | 84.0 | 7.15e-01 | 100.0% | 70.0% |
| 3417561 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.91 | 85.0 | 5.02e-01 | 100.0% | 15.6% |
| 2124918 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.91 | 85.0 | 5.84e-01 | 100.0% | 33.8% |
| 3675929 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.91 | 77.0 | 7.22e-01 | 100.0% | 76.4% |
| 3670445 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.91 | 85.0 | 4.96e-01 | 100.0% | 14.8% |
| 4277578 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.91 | 78.0 | 7.62e-01 | 100.0% | 86.0% |
| 3165082 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.90 | 78.0 | 7.62e-01 | 100.0% | 86.0% |
| 3349612 | 101.15.1.5 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM3_LYK4_5 | 0.90 | 75.0 | 7.27e-01 | 100.0% | 82.0% |
| None | — | 0.90 | 84.0 | 5.90e-01 | 100.0% | 36.8% | |
| 3381619 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.90 | 84.0 | 4.93e-01 | 100.0% | 15.7% |
| 3359799 | 101.15.1.10 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM2_NFP | 0.90 | 83.0 | 5.77e-01 | 100.0% | 34.6% |
| 4157099 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.89 | 77.0 | 7.62e-01 | 100.0% | 89.6% |
| 3964920 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.88 | 73.0 | 6.68e-01 | 100.0% | 70.7% |
| 3303205 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.88 | 79.0 | 7.18e-01 | 100.0% | 75.0% |
| 4069716 | 101.15.1.14 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM, LysM2_CERK1_LYK3_4_5 | 0.88 | 81.0 | 5.78e-01 | 100.0% | 38.3% |
| 3979943 | 101.15.1.3 ↗ | alpha arrays › HTH › LysM domain › LysM domain › Phage_tail_X | 0.88 | 78.0 | 7.59e-01 | 97.8% | 92.0% |
| 3698672 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.87 | 71.0 | 5.36e-01 | 100.0% | 39.0% |
| 3711427 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.87 | 71.0 | 6.17e-01 | 100.0% | 59.4% |
| 3166029 | 101.15.1.0 ↗ | alpha arrays › HTH › LysM domain › LysM domain | 0.86 | 76.0 | 7.17e-01 | 100.0% | 83.6% |
| 3604763 | 101.15.1.0 ↗ | alpha arrays › HTH › LysM domain › LysM domain | 0.86 | 70.0 | 5.66e-01 | 100.0% | 48.2% |
| 3320955 | 101.15.1.5 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM3_LYK4_5 | 0.86 | 73.0 | 6.44e-01 | 100.0% | 66.2% |
| 3337328 | 101.15.1.14 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM, LysM2_CERK1_LYK3_4_5 | 0.86 | 79.0 | 4.70e-01 | 100.0% | 16.5% |
| 4491522 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.85 | 72.0 | 6.60e-01 | 100.0% | 71.7% |
| 3636417 | 101.15.1.0 ↗ | alpha arrays › HTH › LysM domain › LysM domain | 0.85 | 76.0 | 7.25e-01 | 100.0% | 84.9% |
| 3679146 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.85 | 74.0 | 5.33e-01 | 100.0% | 36.0% |
| 2895417 | 101.15.1.0 ↗ | alpha arrays › HTH › LysM domain › LysM domain | 0.85 | 74.0 | 6.27e-01 | 100.0% | 61.0% |
| 4149501 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.85 | 72.0 | 7.01e-01 | 100.0% | 86.0% |
| 3656643 | 101.15.1.9 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM1_NFP_LYK, LysM2_CERK1_LYK3_4_5 | 0.85 | 77.0 | 5.36e-01 | 100.0% | 34.8% |
| 3448128 | 101.15.1.0 ↗ | alpha arrays › HTH › LysM domain › LysM domain | 0.84 | 77.0 | 5.40e-01 | 100.0% | 36.3% |
| 1759182 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.84 | 71.0 | 6.86e-01 | 100.0% | 84.3% |
| 3691772 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.84 | 71.0 | 6.73e-01 | 100.0% | 78.2% |
| 3691758 | 101.15.1.0 ↗ | alpha arrays › HTH › LysM domain › LysM domain | 0.83 | 74.0 | 6.99e-01 | 100.0% | 81.8% |
| 3720958 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.83 | 69.0 | 6.76e-01 | 100.0% | 86.0% |
| 4492966 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.83 | 69.0 | 6.54e-01 | 100.0% | 78.2% |
| 3963519 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.82 | 74.0 | 6.54e-01 | 100.0% | 73.8% |
| 3185732 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.82 | 74.0 | 6.93e-01 | 100.0% | 89.1% |
| 3247196 | 101.15.1.0 ↗ | alpha arrays › HTH › LysM domain › LysM domain | 0.82 | 68.0 | 6.27e-01 | 100.0% | 71.7% |
| 3183656 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.81 | 73.0 | 6.47e-01 | 100.0% | 72.3% |
| 3819870 | 101.15.1.6 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM2_CERK1_LYK3_4_5 | 0.81 | 75.0 | 5.19e-01 | 100.0% | 34.1% |
| 2042916 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.81 | 67.0 | 6.42e-01 | 100.0% | 79.6% |
| 3585157 | 101.15.1.0 ↗ | alpha arrays › HTH › LysM domain › LysM domain | 0.81 | 58.0 | 5.10e-01 | 73.9% | 52.3% |
| 3989756 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.81 | 73.0 | 7.19e-01 | 100.0% | 95.8% |
| 3375189 | 101.15.1.10 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM2_NFP | 0.81 | 72.0 | 6.23e-01 | 100.0% | 65.7% |
| 3355076 | 101.15.1.6 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM2_CERK1_LYK3_4_5 | 0.81 | 70.0 | 6.43e-01 | 100.0% | 75.0% |
| 3365578 | 101.15.1.5 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM3_LYK4_5 | 0.81 | 73.0 | 5.99e-01 | 100.0% | 61.3% |
| 3188069 | 101.15.1.0 ↗ | alpha arrays › HTH › LysM domain › LysM domain | 0.81 | 72.0 | 6.40e-01 | 100.0% | 72.3% |
| 4128043 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.81 | 67.0 | 6.75e-01 | 100.0% | 95.6% |
| 3671032 | 101.15.1.11 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM1_NFP_LYK, LysM2_NFP | 0.80 | 72.0 | 4.83e-01 | 100.0% | 27.9% |
| 3651054 | 101.15.1.10 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM2_NFP | 0.80 | 72.0 | 4.90e-01 | 100.0% | 29.7% |
| 3666767 | 101.15.1.10 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM2_NFP | 0.80 | 72.0 | 5.45e-01 | 100.0% | 43.8% |
| 3340381 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.80 | 57.0 | 6.27e-01 | 76.1% | 100.0% |
| 2968802 | 101.15.1.11 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM1_NFP_LYK, LysM2_NFP | 0.78 | 68.0 | 4.85e-01 | 100.0% | 33.3% |
| 3611431 | 101.15.1.0 ↗ | alpha arrays › HTH › LysM domain › LysM domain | 0.76 | 66.0 | 6.09e-01 | 100.0% | 81.7% |
| 4180515 | 101.15.1.0 ↗ | alpha arrays › HTH › LysM domain › LysM domain | 0.75 | 65.0 | 6.25e-01 | 100.0% | 85.2% |
| 3595402 | 101.15.1.0 ↗ | alpha arrays › HTH › LysM domain › LysM domain | 0.75 | 60.0 | 6.12e-01 | 89.1% | 93.3% |
| 3716764 | 101.15.1.12 ↗ | alpha arrays › HTH › LysM domain › LysM domain › PF30403 | 0.75 | 65.0 | 6.00e-01 | 100.0% | 81.7% |
| 3269916 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.74 | 63.0 | 5.86e-01 | 100.0% | 76.7% |
| 3261423 | 101.15.1.0 ↗ | alpha arrays › HTH › LysM domain › LysM domain | 0.73 | 61.0 | 6.06e-01 | 100.0% | 93.9% |
| 1649977 | 101.15.1.2 ↗ | alpha arrays › HTH › LysM domain › LysM domain › OapA | 0.71 | 63.0 | 5.04e-01 | 100.0% | 52.2% |
| 4100484 | 101.1.9.8 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N | 0.70 | 55.0 | 5.31e-01 | 91.3% | 90.9% |
| 3164516 | 101.15.1.2 ↗ | alpha arrays › HTH › LysM domain › LysM domain › OapA | 0.68 | 56.0 | 4.70e-01 | 100.0% | 51.8% |
| 4886263 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.68 | 54.0 | 5.16e-01 | 91.3% | 90.9% |
| 4944444 | 102.2.1.0 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH | 0.67 | 53.0 | 4.76e-01 | 100.0% | 74.7% |
| 5016168 | 102.2.1.0 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH | 0.66 | 53.0 | 4.65e-01 | 100.0% | 73.8% |
| 3491972 | 108.1.1.28 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_6,EF-hand_7 | 0.58 | 48.0 | 4.21e-01 | 97.8% | 78.7% |
D3
high
residues 309-434