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scnpilot_solids1_trim150_scaffold_46_prodigal-single.1__X__X__00088
Bact-Virscnpilot_solids1_trim150_scaffold_46_prodigal-single.1__X__X__00088
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 41-103
Domain cluster:
rep: OR228460.1__WNV47986.1__X__00312__D45-100
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2vixA02 | 1.10.150.630 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.65 | 45.0 | 4.04e-01 | 92.1% | 51.7% |
| 1aorA02 | 1.10.569.10 | Mainly Alpha › Orthogonal Bundle › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A; domain 2 › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A, domain 2 | 0.64 | 54.0 | 3.93e-01 | 98.4% | 56.5% |
| 1l5aA03 | 3.30.559.30 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Nonribosomal peptide synthetase, condensation domain | 0.64 | 55.0 | 3.88e-01 | 98.4% | 40.3% |
| 1zp2A02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.63 | 51.0 | 4.33e-01 | 93.7% | 57.1% |
| 2eduA01 | 1.10.150.280 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › AF1531-like domain | 0.60 | 39.0 | 3.65e-01 | 92.1% | 51.9% |
| 7y7oA01 | 3.40.390.30 | Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › "Metalloproteases (""zincins""), catalytic domain" | 0.59 | 47.0 | 3.73e-01 | 93.7% | 74.8% |
| 4qiwK00 | 3.90.940.10 | Alpha Beta › Alpha-Beta Complex › Eukaryotic RPB6 RNA polymerase subunit › RNA polymerase subunit, RPB6/omega | 0.58 | 42.0 | 4.42e-01 | 84.1% | 87.5% |
| 4griA04 | 1.10.8.70 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutamate-tRNA synthetase, class I, anticodon-binding domain 1 | 0.58 | 38.0 | 4.06e-01 | 77.8% | 83.0% |
| 3lcnB00 | 1.10.340.40 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Nuclear abundant poly(A) RNA-bind protein 2, N-terminal domain | 0.57 | 40.0 | 3.53e-01 | 74.6% | 79.4% |
| 1j09A04 | 1.10.8.70 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutamate-tRNA synthetase, class I, anticodon-binding domain 1 | 0.56 | 38.0 | 4.22e-01 | 85.7% | 95.8% |
| 5m43A00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.54 | 43.0 | 3.30e-01 | 93.7% | 47.0% |
| 3k3wB03 | 1.10.1400.10 | Mainly Alpha › Orthogonal Bundle › Penicillin amidase (Acylase) alpha subunit, N-terminal domain › Aminohydrolase, alpha-helical knob region | 0.54 | 44.0 | 3.45e-01 | 100.0% | 88.7% |
| 7zs9F01 | 3.90.940.10 | Alpha Beta › Alpha-Beta Complex › Eukaryotic RPB6 RNA polymerase subunit › RNA polymerase subunit, RPB6/omega | 0.53 | 39.0 | 3.41e-01 | 81.0% | 53.0% |
| 7wf8B01 | 1.10.167.10 | Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2 | 0.53 | 40.0 | 3.36e-01 | 87.3% | 94.2% |
| 7yosA01 | 3.90.1640.30 | Alpha Beta › Alpha-Beta Complex › inorganic pyrophosphatase (n-terminal core) › | 0.52 | 39.0 | 2.91e-01 | 85.7% | 63.4% |
| 2ktmA00 | 1.10.790.10 | Mainly Alpha › Orthogonal Bundle › Major Prion Protein › Prion/Doppel protein, beta-ribbon domain | 0.51 | 36.0 | 3.60e-01 | 77.8% | 75.0% |
| 2xubA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 35.0 | 3.18e-01 | 73.0% | 53.3% |
| 2a5yB03 | 1.10.8.490 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ced-4 linker helical domain-like | 0.50 | 38.0 | 3.62e-01 | 95.2% | 69.2% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3287843 | 2006.1.1.44 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase, Hydrolase_like | 0.73 | 48.0 | 3.27e-01 | 87.3% | 19.5% |
| 4338520 | 169.1.1.1 ↗ | alpha complex topology › Aldehyde ferredoxin oxidoreductase-C › Aldehyde ferredoxin oxidoreductase-C › Aldehyde ferredoxin oxidoreductase-C › AFOR_C | 0.64 | 54.0 | 3.36e-01 | 100.0% | 30.5% |
| 3505931 | 6130.1.1.0 ↗ | alpha complex topology › Selenocysteine synthase N-terminal domain › Selenocysteine synthase N-terminal domain › Selenocysteine synthase N-terminal domain | 0.63 | 52.0 | 5.06e-01 | 93.7% | 87.1% |
| 4977230 | 142.1.1.0 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors | 0.59 | 44.0 | 4.54e-01 | 85.7% | 100.0% |
| 3780983 | 102.1.1.25 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_3 | 0.58 | 37.0 | 3.42e-01 | 92.1% | 48.2% |
| 4146098 | 6056.1.1.2 ↗ | alpha arrays › SP1917-like › SP1917-like › SP1917-like › PrmC_N | 0.57 | 48.0 | 4.55e-01 | 95.2% | 100.0% |
| 3230930 | 103.4.1.5 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › KIX_2 | 0.57 | 45.0 | 4.18e-01 | 92.1% | 83.5% |
| 4030988 | 6056.1.1.2 ↗ | alpha arrays › SP1917-like › SP1917-like › SP1917-like › PrmC_N | 0.56 | 45.0 | 4.36e-01 | 93.7% | 90.7% |
| 4292146 | 6056.1.1.2 ↗ | alpha arrays › SP1917-like › SP1917-like › SP1917-like › PrmC_N | 0.56 | 45.0 | 4.32e-01 | 93.7% | 93.3% |
| 4043422 | 6056.1.1.2 ↗ | alpha arrays › SP1917-like › SP1917-like › SP1917-like › PrmC_N | 0.54 | 45.0 | 4.29e-01 | 96.8% | 100.0% |
| 4207520 | 6056.1.1.2 ↗ | alpha arrays › SP1917-like › SP1917-like › SP1917-like › PrmC_N | 0.54 | 45.0 | 4.29e-01 | 96.8% | 97.3% |
| 4406284 | 152.1.2.1 ↗ | alpha arrays › RPB6/omega subunit-like › RPB6/omega subunit-like › RNA polymerase omega subunit › RNA_pol_Rpb6 | 0.54 | 44.0 | 4.31e-01 | 95.2% | 94.3% |
| 4517409 | 6056.1.1.2 ↗ | alpha arrays › SP1917-like › SP1917-like › SP1917-like › PrmC_N | 0.54 | 43.0 | 4.21e-01 | 92.1% | 91.4% |
| 3357775 | 101.1.2.396 ↗ | alpha arrays › HTH › HTH › winged helix domain › WHD_ROQ1 | 0.53 | 37.0 | 3.36e-01 | 74.6% | 83.3% |
| 4501825 | 6056.1.1.2 ↗ | alpha arrays › SP1917-like › SP1917-like › SP1917-like › PrmC_N | 0.53 | 44.0 | 4.20e-01 | 95.2% | 98.7% |
| 3963955 | 6056.1.1.2 ↗ | alpha arrays › SP1917-like › SP1917-like › SP1917-like › PrmC_N | 0.51 | 42.0 | 4.18e-01 | 92.1% | 92.3% |
| 3588816 | 6056.1.1.2 ↗ | alpha arrays › SP1917-like › SP1917-like › SP1917-like › PrmC_N | 0.51 | 41.0 | 4.02e-01 | 95.2% | 98.6% |
| 3957615 | 5041.1.1.0 ↗ | extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C | 0.50 | 34.0 | 3.04e-01 | 73.0% | 48.6% |
| 3281073 | 101.1.9.17 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 | 0.50 | 42.0 | 3.64e-01 | 96.8% | 61.9% |