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scnpilot_solids1_trim150_scaffold_46_prodigal-single.1__X__X__00091

Bact-Vir

scnpilot_solids1_trim150_scaffold_46_prodigal-single.1__X__X__00091

Identity

Kingdom:
phage

Quality

94.8 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 15-73
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7y7oA01 3.40.390.30 Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › "Metalloproteases (""zincins""), catalytic domain" 0.56 45.0 3.59e-01 100.0% 70.6%
1yt3A02 1.10.150.80 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › HRDC domain 0.53 47.0 3.99e-01 100.0% 75.8%
2ltuA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.53 38.0 3.79e-01 88.1% 72.6%
6djwA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.51 40.0 3.75e-01 84.7% 98.6%
3e9eB00 3.40.50.1240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like 0.50 43.0 2.92e-01 100.0% 71.5%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3496288 130.1.1.1 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP 0.62 37.0 3.59e-01 89.8% 53.8%
4516508 2498.1.1.22 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YbeY 0.57 48.0 3.57e-01 100.0% 65.3%
4666684 2498.1.1.22 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YbeY 0.56 46.0 3.57e-01 100.0% 72.9%
4373220 2498.1.1.22 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YbeY 0.54 44.0 3.38e-01 98.3% 66.9%
4290221 2498.1.1.22 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YbeY 0.53 40.0 3.28e-01 86.4% 72.0%
1030234 103.1.1.21 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › AMPK_alpha_AID 0.53 38.0 3.79e-01 88.1% 72.6%
4073443 2498.1.1.22 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YbeY 0.51 43.0 3.22e-01 100.0% 92.1%
4026176 147.1.1.0 alpha arrays › Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex › Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex › Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 0.50 37.0 3.87e-01 81.4% 94.0%
D2 medium residues 74-143
PDB
Domain cluster: representative
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2imlA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.66 53.0 4.52e-01 87.1% 100.0%
1ylnA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.66 54.0 4.63e-01 91.4% 66.7%
3isrA01 3.10.620.30 Alpha Beta › Roll › C8orf32 fold › 0.66 49.0 3.62e-01 80.0% 74.6%
3q39B02 2.40.30.120 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses 0.64 56.0 4.83e-01 98.6% 98.2%
3k6yA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.62 43.0 3.92e-01 75.7% 54.3%
3ec6A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.62 47.0 3.95e-01 84.3% 50.8%
2ptfA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.61 52.0 4.17e-01 97.1% 98.6%
2xzlA02 2.40.30.230 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.61 53.0 5.13e-01 97.1% 100.0%
2k2jA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 43.0 3.69e-01 77.1% 84.6%
2dpyA00 3.40.50.12240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.60 51.0 3.20e-01 100.0% 25.4%
2furB00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.60 47.0 3.58e-01 91.4% 88.4%
3ef2A02 3.30.460.70 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › 0.58 45.0 3.71e-01 87.1% 94.9%
2ok5A02 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.58 47.0 3.37e-01 92.9% 52.1%
3hlkA01 2.60.40.2240 Mainly Beta › Sandwich › Immunoglobulin-like › Acyl-CoA thioester hydrolase/BAAT N-terminal domain 0.57 48.0 3.92e-01 95.7% 85.2%
2dn6A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 39.0 3.38e-01 72.9% 73.0%
2htiA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 45.0 3.83e-01 91.4% 54.0%
4bi3A01 3.90.1720.80 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.56 45.0 4.24e-01 100.0% 70.3%
7oc3A01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 47.0 4.41e-01 98.6% 80.4%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.56 46.0 4.52e-01 92.9% 88.3%
1h10A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 38.0 3.29e-01 72.9% 77.8%
2p1gA02 2.30.260.10 Mainly Beta › Roll › putative xylanase like fold › putative xylanase like domain 0.55 47.0 4.28e-01 100.0% 97.0%
1faoA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 39.0 3.50e-01 74.3% 83.0%
1plsA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 38.0 3.36e-01 74.3% 74.3%
1kkeA02 2.60.90.20 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Virus attachment protein , globular domain 0.55 43.0 3.55e-01 88.6% 79.4%
8ornD01 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.55 42.0 3.25e-01 85.7% 94.3%
2y7bA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 40.0 3.31e-01 78.6% 85.8%
1v5uA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 39.0 3.38e-01 77.1% 83.8%
4a6fA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 38.0 3.39e-01 74.3% 84.8%
4p25D01 2.40.510.10 Mainly Beta › Beta Barrel › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Positive stranded ssRNA viruses 0.54 45.0 3.39e-01 98.6% 92.3%
2vrwB02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 39.0 3.30e-01 77.1% 70.2%
4l5tB02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 37.0 3.51e-01 74.3% 95.6%
2zkmX01 2.30.29.240 Mainly Beta › Roll › PH-domain like › 0.54 38.0 2.84e-01 77.1% 51.5%
4kbxA01 2.40.37.30 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › 0.54 46.0 3.27e-01 98.6% 32.8%
2lccA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 38.0 3.77e-01 78.6% 93.4%
4iapA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 38.0 3.56e-01 77.1% 89.1%
1fgyA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 38.0 3.25e-01 77.1% 84.9%
1mixA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 37.0 3.42e-01 72.9% 81.7%
2kieA00 2.30.29.110 Mainly Beta › Roll › PH-domain like › 0.53 38.0 3.26e-01 77.1% 75.0%
1ukfA00 3.90.70.20 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.53 46.0 3.45e-01 100.0% 51.6%
2dfkC02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 38.0 3.08e-01 77.1% 69.5%
4k15A00 2.60.40.3860 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 40.0 3.28e-01 84.3% 71.0%
4ecnA01 2.60.40.3540 Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF4458 0.52 40.0 3.66e-01 90.0% 62.1%
4odbA00 2.60.90.20 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Virus attachment protein , globular domain 0.51 41.0 3.34e-01 98.6% 61.7%
4lejA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 39.0 3.02e-01 100.0% 35.5%
6m9yA00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.50 35.0 3.70e-01 74.3% 98.2%
ECOD (62)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5016546 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.68 58.0 5.68e-01 94.3% 100.0%
4958674 1.1.7.7 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.65 56.0 5.08e-01 100.0% 95.0%
3924486 2004.1.1.184 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_11 0.65 56.0 3.42e-01 100.0% 25.5%
3597002 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 52.0 4.46e-01 87.1% 71.8%
3974053 1.1.7.7 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.65 56.0 5.06e-01 100.0% 98.0%
4980234 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.63 52.0 3.91e-01 92.9% 86.3%
4992782 219.1.1.13 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.63 45.0 3.47e-01 77.1% 95.9%
4953249 219.1.1.13 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.63 49.0 3.88e-01 87.1% 99.4%
4945617 219.1.1.13 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.63 45.0 3.52e-01 77.1% 89.4%
4010630 2004.1.1.10 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATP-synt_ab 0.62 54.0 3.32e-01 100.0% 18.1%
4319764 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.62 53.0 4.65e-01 100.0% 71.8%
4933308 1.1.5.17 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N 0.61 50.0 3.93e-01 91.4% 94.8%
3998042 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.61 53.0 4.70e-01 98.6% 91.4%
3933047 4.1.1.187 beta barrels › SH3 › SH3 › SH3 › DIRP 0.61 52.0 4.11e-01 100.0% 78.8%
5031647 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.61 50.0 5.01e-01 91.4% 91.4%
4283898 1.1.8.5 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.61 48.0 4.38e-01 90.0% 64.2%
4519252 1.1.7.10 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Flavokinase 0.60 51.0 4.46e-01 98.6% 74.8%
3483830 220.1.1.278 beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF7085 0.60 45.0 3.39e-01 80.0% 62.9%
3387360 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.60 52.0 4.94e-01 100.0% 90.6%
3244497 4.1.1.187 beta barrels › SH3 › SH3 › SH3 › DIRP 0.60 49.0 3.98e-01 97.1% 73.3%
3823190 1.1.5.33 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.59 51.0 3.98e-01 98.6% 91.3%
3781470 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 43.0 3.24e-01 78.6% 68.1%
3842233 1.1.7.69 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › MOV-10_beta-barrel 0.59 50.0 4.67e-01 98.6% 100.0%
3713571 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 52.0 4.51e-01 97.1% 87.6%
4001211 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 42.0 4.13e-01 80.0% 69.2%
3605922 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 51.0 4.57e-01 98.6% 90.0%
5018197 3487.1.1.1 a+b three layers › Integron cassette protein VCH_CASS3 › Integron cassette protein VCH_CASS3 › Integron cassette protein VCH_CASS3 › M1E1E6-like 0.58 39.0 3.36e-01 70.0% 82.6%
3423906 4.25.1.1 beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain › Auxin_resp 0.58 44.0 4.41e-01 82.9% 100.0%
3762030 219.1.1.14 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Josephin 0.57 51.0 4.22e-01 100.0% 64.0%
3448643 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.57 49.0 3.55e-01 97.1% 79.5%
3635615 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 41.0 3.11e-01 78.6% 80.0%
3650249 1.1.5.33 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.57 49.0 3.41e-01 98.6% 67.8%
4028467 1.1.5.33 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.57 48.0 3.28e-01 97.1% 59.3%
1069946 219.1.1.52 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Tae4 0.56 45.0 3.55e-01 100.0% 39.3%
3933782 4184.1.1.0 beta barrels › MFPT repeat › MFPT repeat › MFPT repeat 0.56 47.0 4.49e-01 98.6% 97.6%
3385472 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 47.0 4.44e-01 98.6% 98.9%
3699097 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.56 39.0 3.49e-01 72.9% 86.0%
3482603 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 39.0 3.51e-01 72.9% 85.0%
3434219 4.25.1.2 beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain › BRWD_AD 0.56 46.0 4.22e-01 94.3% 89.5%
925 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.55 38.0 3.36e-01 74.3% 74.3%
3226827 4.1.1.133 beta barrels › SH3 › SH3 › SH3 › SMN_YG-box 0.55 45.0 4.03e-01 95.7% 61.9%
3843802 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.55 39.0 3.18e-01 77.1% 76.6%
3268767 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.55 38.0 3.36e-01 74.3% 74.5%
3909439 220.1.1.40 beta barrels › PH domain-like › PH domain-like › PH domain-like › OCRL_clath_bd 0.54 39.0 3.41e-01 77.1% 86.1%
5003416 3487.1.1.0 a+b three layers › Integron cassette protein VCH_CASS3 › Integron cassette protein VCH_CASS3 › Integron cassette protein VCH_CASS3 0.54 37.0 3.21e-01 71.4% 83.3%
3487889 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 39.0 3.34e-01 77.1% 82.5%
3715939 10.12.1.0 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.54 47.0 3.42e-01 100.0% 45.9%
3621943 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.54 42.0 3.48e-01 87.1% 73.1%
3172487 220.1.1.57 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_20 0.53 39.0 3.04e-01 77.1% 87.7%
3276134 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.53 39.0 3.26e-01 78.6% 68.0%
3252283 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.53 38.0 3.21e-01 75.7% 76.8%
3282593 4121.1.1.1 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA 0.53 38.0 2.65e-01 75.7% 58.3%
3206868 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.53 46.0 3.79e-01 100.0% 64.4%
3937774 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.53 39.0 3.26e-01 78.6% 81.6%
4021140 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 38.0 3.29e-01 77.1% 80.9%
3697281 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.51 37.0 3.24e-01 77.1% 80.0%
3626506 220.1.1.66 beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.51 37.0 3.05e-01 78.6% 67.9%
3235708 214.1.1.0 a+b two layers › SH2 › SH2 › SH2 0.51 37.0 3.40e-01 80.0% 60.0%
409468 389.1.2.2 few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain › Sushi_2 0.51 40.0 3.83e-01 91.4% 74.1%
5042583 10.3.1.0 beta sandwiches › jelly-roll › TNF-like › TNF-like 0.51 42.0 3.90e-01 100.0% 93.7%
3272654 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.50 39.0 3.56e-01 94.3% 62.0%
3798461 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.50 35.0 3.08e-01 75.7% 76.7%