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scnpilot_solids1_trim150_scaffold_46_prodigal-single.1__X__X__00102
Bact-Virscnpilot_solids1_trim150_scaffold_46_prodigal-single.1__X__X__00102
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 15-107
Domain cluster:
rep: S2_012_000_R2_scaffold_0_prodigal-single.1__X__X__00670__D5-100
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04386.19 best | SspB | 36.1 | 9.40e-09 | 91.4% | 53.2% |
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ou8A00 | 2.30.30.220 | Mainly Beta › Roll › SH3 type barrels. › SspB-like | 0.91 | 87.0 | 8.23e-01 | 100.0% | 89.6% |
| 2nysA00 | 2.30.30.220 | Mainly Beta › Roll › SH3 type barrels. › SspB-like | 0.79 | 73.0 | 6.72e-01 | 100.0% | 86.3% |
| 1azpA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.68 | 39.0 | 4.47e-01 | 72.0% | 78.8% |
| 1vq8Q00 | 2.30.30.70 | Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 | 0.67 | 46.0 | 4.64e-01 | 93.5% | 69.5% |
| 3c4sA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.67 | 41.0 | 4.90e-01 | 90.3% | 100.0% |
| 1ib8A02 | 2.30.30.180 | Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain | 0.65 | 44.0 | 4.93e-01 | 93.5% | 95.5% |
| 1lomA00 | 2.30.60.10 | Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N | 0.63 | 34.0 | 3.33e-01 | 79.6% | 49.5% |
| 1v1cA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.59 | 41.0 | 4.64e-01 | 80.6% | 100.0% |
| 4fr9A00 | 3.10.450.360 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.59 | 34.0 | 2.95e-01 | 87.1% | 36.2% |
| 2egcA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.58 | 40.0 | 4.28e-01 | 82.8% | 86.7% |
| 3qijB03 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.54 | 37.0 | 3.79e-01 | 82.8% | 74.2% |
| 7w6yA02 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.53 | 37.0 | 3.99e-01 | 73.1% | 100.0% |
| 5ejrA03 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.53 | 35.0 | 3.79e-01 | 84.9% | 80.0% |
| 5xbfA03 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.52 | 36.0 | 3.68e-01 | 72.0% | 85.2% |
| 2o07A01 | 2.30.140.10 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain | 0.51 | 30.0 | 3.49e-01 | 77.4% | 89.8% |
| 1h4rA03 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.51 | 36.0 | 3.65e-01 | 82.8% | 75.8% |
| 6nrzA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.50 | 41.0 | 3.50e-01 | 89.2% | 58.7% |
ECOD (32)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 605 | 4.1.2.1 ↗ | beta barrels › SH3 › SH3 › Stringent starvation protein B, SspB › SspB | 0.91 | 87.0 | 8.23e-01 | 100.0% | 89.6% |
| 165392 | 4.1.2.1 ↗ | beta barrels › SH3 › SH3 › Stringent starvation protein B, SspB › SspB | 0.79 | 73.0 | 6.65e-01 | 100.0% | 84.2% |
| 3281945 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.70 | 51.0 | 5.21e-01 | 94.6% | 78.9% |
| 4937705 | 4.1.1.14 ↗ | beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e | 0.68 | 47.0 | 4.78e-01 | 93.5% | 73.3% |
| 4593903 | 4.1.1.14 ↗ | beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e | 0.66 | 44.0 | 4.51e-01 | 91.4% | 71.1% |
| 4973804 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.66 | 39.0 | 4.25e-01 | 80.6% | 72.0% |
| 4056117 | 4.8.1.5 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR | 0.66 | 37.0 | 4.28e-01 | 72.0% | 78.5% |
| 4946972 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.64 | 44.0 | 4.51e-01 | 91.4% | 73.3% |
| 4087011 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.64 | 48.0 | 4.84e-01 | 94.6% | 80.0% |
| 3508531 | 809.2.1.0 ↗ | a+b two layers › BLIP-like › BT0923-like › BT0923-like | 0.63 | 33.0 | 4.20e-01 | 78.5% | 92.0% |
| 3519122 | 4.31.1.1 ↗ | beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL | 0.62 | 46.0 | 4.70e-01 | 94.6% | 82.2% |
| 3978997 | 4.31.1.1 ↗ | beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL | 0.62 | 46.0 | 4.66e-01 | 95.7% | 80.0% |
| 3972550 | 4.31.1.1 ↗ | beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL | 0.60 | 45.0 | 4.44e-01 | 95.7% | 75.0% |
| 3942998 | 4056.1.1.0 ↗ | beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein | 0.59 | 39.0 | 4.30e-01 | 83.9% | 88.6% |
| 5061515 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.57 | 44.0 | 4.25e-01 | 81.7% | 82.9% |
| 3497738 | 220.1.1.22 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C | 0.56 | 38.0 | 3.43e-01 | 84.9% | 50.0% |
| 3629551 | 220.1.1.7 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › IRS | 0.56 | 40.0 | 3.54e-01 | 74.2% | 84.3% |
| 4084890 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.56 | 37.0 | 4.27e-01 | 81.7% | 98.5% |
| 3480535 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.55 | 38.0 | 3.73e-01 | 82.8% | 64.8% |
| 3925891 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.55 | 40.0 | 4.10e-01 | 82.8% | 80.0% |
| 3495619 | 220.1.1.22 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C | 0.53 | 37.0 | 3.50e-01 | 86.0% | 60.0% |
| 3404845 | 220.1.1.22 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C | 0.53 | 36.0 | 3.61e-01 | 84.9% | 68.4% |
| 3737804 | 220.1.1.121 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_SLA1 | 0.53 | 39.0 | 3.81e-01 | 82.8% | 69.5% |
| 4322675 | 220.1.1.121 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_SLA1 | 0.53 | 37.0 | 3.53e-01 | 82.8% | 61.8% |
| 3214387 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.53 | 40.0 | 4.15e-01 | 87.1% | 83.3% |
| 4031110 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.52 | 37.0 | 3.42e-01 | 75.3% | 67.2% |
| 3300116 | 220.1.1.7 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › IRS | 0.52 | 40.0 | 3.90e-01 | 82.8% | 79.0% |
| 3588663 | 9.4.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains | 0.52 | 41.0 | 4.13e-01 | 84.9% | 100.0% |
| 3743110 | 220.1.1.19 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Rttp106-like_middle | 0.51 | 36.0 | 3.49e-01 | 74.2% | 91.4% |
| 3931122 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.51 | 36.0 | 3.65e-01 | 81.7% | 73.7% |
| 3964629 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.50 | 39.0 | 3.67e-01 | 88.2% | 83.2% |
| 5005811 | 3414.1.1.0 ↗ | beta sandwiches › A putative surface protein › A putative surface protein › A putative surface protein | 0.50 | 36.0 | 3.85e-01 | 86.0% | 86.3% |