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scnpilot_solids1_trim150_scaffold_46_prodigal-single.1__X__X__00126

Bact-Vir

scnpilot_solids1_trim150_scaffold_46_prodigal-single.1__X__X__00126

Identity

Kingdom:
phage

Quality

69.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 25-84
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF11160.14 best Hva1_TUDOR 68.1 7.90e-19 96.7% 98.3%
CATH (50)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.82 61.0 5.95e-01 100.0% 72.3%
5ygbA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.82 67.0 6.07e-01 100.0% 66.3%
2ckkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.81 64.0 6.81e-01 100.0% 94.3%
2f5kA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.81 63.0 6.76e-01 100.0% 100.0%
3goxA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.80 60.0 6.51e-01 100.0% 94.1%
2d9tA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.79 59.0 6.44e-01 100.0% 98.0%
1khcA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.76 63.0 6.15e-01 100.0% 81.5%
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.76 59.0 6.05e-01 100.0% 86.0%
4ld6A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.76 64.0 5.08e-01 100.0% 47.0%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.76 67.0 6.27e-01 100.0% 79.2%
4dq2A03 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.75 53.0 5.82e-01 100.0% 95.7%
2e6zA00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.73 54.0 5.49e-01 100.0% 79.7%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.71 54.0 5.30e-01 100.0% 75.4%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 52.0 5.68e-01 98.3% 100.0%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.71 57.0 5.65e-01 100.0% 82.5%
1dz1A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.70 49.0 4.71e-01 93.3% 64.3%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.69 57.0 5.41e-01 100.0% 76.8%
3a5zB01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.69 55.0 5.47e-01 100.0% 82.5%
1whmA01 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.69 61.0 5.79e-01 100.0% 98.6%
2cudA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 58.0 5.26e-01 100.0% 69.6%
4iupB01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.68 57.0 5.66e-01 100.0% 88.7%
1x6gA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 58.0 5.26e-01 100.0% 70.4%
2mamA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 62.0 4.87e-01 100.0% 80.5%
3cpxA02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.67 42.0 4.20e-01 100.0% 62.9%
5l37C00 2.40.50.220 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › EutN/Ccml 0.66 52.0 4.56e-01 83.3% 88.4%
4fssB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 56.0 5.61e-01 100.0% 93.4%
1lckA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 54.0 5.49e-01 100.0% 93.2%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.65 57.0 5.23e-01 100.0% 76.0%
3upuA03 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.65 58.0 4.48e-01 100.0% 93.9%
1yn8A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 54.0 5.50e-01 100.0% 94.9%
7u32F02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.63 47.0 5.04e-01 100.0% 96.1%
1zuyA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 54.0 5.56e-01 100.0% 98.3%
2v1qA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 54.0 5.43e-01 100.0% 95.0%
1u04A02 3.90.70.180 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.63 53.0 4.40e-01 98.3% 81.2%
1oxxK02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 43.0 4.78e-01 81.7% 95.6%
6vlfA03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 51.0 5.21e-01 100.0% 96.6%
5f3yA05 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 52.0 4.81e-01 100.0% 79.2%
2e5yA01 2.60.15.10 Mainly Beta › Sandwich › ATP Synthase; domain 1 › F0F1 ATP synthase delta/epsilon subunit, N-terminal 0.59 39.0 3.53e-01 71.7% 47.7%
5j3tA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 47.0 3.79e-01 95.0% 53.2%
7syvx01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.55 50.0 3.80e-01 100.0% 46.7%
2kknA00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.55 37.0 2.89e-01 71.7% 100.0%
4fw1A02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.55 39.0 4.08e-01 100.0% 85.2%
7rpyA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 43.0 3.65e-01 91.7% 67.0%
1yb3A00 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.52 38.0 2.90e-01 80.0% 72.7%
4oq1A01 2.60.40.4180 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 42.0 3.44e-01 93.3% 90.9%
3asiA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 36.0 2.66e-01 73.3% 47.2%
3u12A00 2.30.29.180 Mainly Beta › Roll › PH-domain like › Ubiquitin carboxyl-terminal hydrolase 26/29/37, pleckstrin homology-like domain 0.51 43.0 3.67e-01 96.7% 67.3%
7xc8A02 2.60.40.760 Mainly Beta › Sandwich › Immunoglobulin-like › Expansin, cellulose-binding-like domain 0.51 42.0 3.70e-01 96.7% 81.4%
3sjnA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.51 37.0 3.01e-01 80.0% 89.1%
1ykkB00 2.60.130.10 Mainly Beta › Sandwich › Protocatechuate 3,4-Dioxygenase, subunit A › Aromatic compound dioxygenase 0.50 41.0 2.87e-01 98.3% 68.9%
ECOD (64)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4501723 4.8.1.45 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Peptidase_U57 0.85 66.0 6.93e-01 100.0% 89.1%
3820064 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.85 63.0 5.60e-01 100.0% 57.5%
4481026 4.1.1.407 beta barrels › SH3 › SH3 › SH3 › PF29661 0.85 61.0 6.12e-01 100.0% 75.0%
3905549 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.84 66.0 5.39e-01 100.0% 47.6%
4015397 4.1.1.72 beta barrels › SH3 › SH3 › SH3 › Hva1_TUDOR 0.84 62.0 6.30e-01 78.3% 88.3%
3486328 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.82 59.0 5.95e-01 100.0% 75.0%
4029093 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.82 62.0 4.49e-01 100.0% 31.0%
4168653 4.1.1.111 beta barrels › SH3 › SH3 › SH3 › Tudor_RapA 0.82 61.0 6.57e-01 100.0% 94.0%
3730229 4.1.1.102 beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.82 65.0 6.01e-01 100.0% 68.0%
5036498 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.79 60.0 5.50e-01 100.0% 64.0%
4101502 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.79 59.0 6.18e-01 100.0% 87.0%
3750522 4.1.1.218 beta barrels › SH3 › SH3 › SH3 › PWP3A-B_N 0.78 66.0 5.28e-01 100.0% 49.1%
3557649 4.8.1.20 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › PWP3A-B_N 0.78 65.0 5.31e-01 100.0% 51.4%
4306285 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.77 61.0 5.79e-01 100.0% 72.9%
3739064 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 63.0 6.20e-01 100.0% 84.6%
3473981 4.1.1.12 beta barrels › SH3 › SH3 › SH3 › PWWP 0.75 70.0 5.33e-01 100.0% 63.2%
3347795 4.1.1.94 beta barrels › SH3 › SH3 › SH3 › SAWADEE 0.74 65.0 5.88e-01 100.0% 71.2%
4240722 4.1.1.12 beta barrels › SH3 › SH3 › SH3 › PWWP 0.73 62.0 5.21e-01 100.0% 56.0%
3826141 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 67.0 5.78e-01 100.0% 74.4%
3691144 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.72 67.0 6.36e-01 100.0% 88.6%
3723834 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 67.0 6.34e-01 100.0% 88.6%
3784770 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.72 67.0 6.16e-01 100.0% 88.0%
4018213 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.72 66.0 4.88e-01 100.0% 42.1%
4138935 4.1.1.241 beta barrels › SH3 › SH3 › SH3 › NifZ 0.71 66.0 6.06e-01 100.0% 88.0%
4051081 4.1.1.32 beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.71 58.0 5.87e-01 100.0% 90.0%
3253266 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 64.0 5.23e-01 100.0% 60.0%
3245735 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 61.0 4.90e-01 100.0% 51.3%
1144815 4.1.1.103 beta barrels › SH3 › SH3 › SH3 › SH3_12 0.69 64.0 5.72e-01 100.0% 80.0%
3923813 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 59.0 5.75e-01 100.0% 86.2%
3785514 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.68 53.0 4.16e-01 88.3% 48.9%
3280641 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.66 50.0 4.31e-01 100.0% 51.0%
4976092 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 56.0 4.89e-01 100.0% 63.3%
3519122 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.65 50.0 4.49e-01 100.0% 57.8%
3953109 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.65 51.0 4.44e-01 100.0% 55.8%
3959770 4.31.1.0 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 0.64 50.0 4.47e-01 100.0% 58.9%
4261760 4.1.1.58 beta barrels › SH3 › SH3 › SH3 › SH3_3 0.64 57.0 4.89e-01 100.0% 72.6%
4545520 4.7.1.7 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › WYL 0.64 50.0 4.51e-01 100.0% 62.4%
3251170 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.63 55.0 5.26e-01 100.0% 84.3%
3972550 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.63 48.0 4.17e-01 100.0% 52.0%
3381699 4.11.1.2 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.62 51.0 4.01e-01 100.0% 45.3%
3281618 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.62 55.0 4.65e-01 100.0% 71.0%
3978997 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.61 53.0 4.57e-01 100.0% 62.1%
4963006 4.1.1.490 beta barrels › SH3 › SH3 › SH3 › PF26269 0.61 53.0 4.79e-01 100.0% 85.9%
3199494 1.1.17.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.61 51.0 3.45e-01 93.3% 41.4%
3942912 4.1.1.323 beta barrels › SH3 › SH3 › SH3 › WYL 0.61 52.0 4.68e-01 100.0% 69.4%
3942998 4056.1.1.0 beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein 0.60 49.0 4.75e-01 100.0% 80.0%
3717251 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 48.0 4.96e-01 93.3% 94.5%
5048974 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 50.0 4.12e-01 100.0% 52.7%
2866962 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.58 50.0 4.21e-01 100.0% 56.5%
4031510 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 48.0 4.31e-01 100.0% 64.4%
3283097 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.57 49.0 4.09e-01 100.0% 58.2%
3591870 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 51.0 3.98e-01 100.0% 93.1%
3479384 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 40.0 2.79e-01 95.0% 21.4%
3180074 1.1.8.11 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP-eEF1A_C 0.57 50.0 4.34e-01 100.0% 69.5%
4057742 2.4.1.11 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3 0.57 49.0 4.81e-01 98.3% 87.7%
3269707 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 41.0 3.75e-01 80.0% 96.5%
4932663 1.1.8.11 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP-eEF1A_C 0.56 49.0 4.03e-01 100.0% 65.5%
4564917 270.1.1.2 beta barrels › FMT C-terminal domain-like › FMT C-terminal domain-related › FMT C-terminal domain-related › Formyl_trans_C 0.56 47.0 4.00e-01 98.3% 73.8%
4934423 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.54 48.0 3.92e-01 98.3% 75.5%
3995204 295.1.1.4 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain 0.53 43.0 4.21e-01 86.7% 80.0%
3784272 1.1.7.102 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF28793 0.53 47.0 3.75e-01 100.0% 52.5%
4886499 2005.1.1.21 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Pantoate_ligase 0.51 39.0 3.27e-01 85.0% 91.8%
4144660 283.1.1.3 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase › Pantoate_ligase 0.51 39.0 3.28e-01 85.0% 91.8%
4468497 7.1.1.0 beta barrels › PDZ domain › PDZ domain › PDZ domain 0.51 43.0 3.67e-01 100.0% 93.3%
D2 high residues 117-176
PDB